Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060525.seq
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    29   2.6  
08_02_0967 - 23110154-23110240,23110620-23110673,23111010-231111...    29   4.5  
09_02_0590 - 10978335-10978728,10978855-10979044,10979130-109791...    28   6.0  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +3

Query: 387 RCTGVRIPQAGTNFPNEIRTQQMFTIDFHGE 479
           RCTGV I   G N   +I T      DFHGE
Sbjct: 159 RCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>08_02_0967 -
           23110154-23110240,23110620-23110673,23111010-23111177,
           23111432-23111534,23111664-23111988,23112091-23112181
          Length = 275

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -2

Query: 169 SAVPAIRSTQCTNHQPIYSYVASEENSESQMGQ 71
           +AVPA R+ + T+H+  ++Y++ +E      G+
Sbjct: 19  TAVPAARAQEETDHEEEFTYISGDEKGPEHWGK 51


>09_02_0590 -
           10978335-10978728,10978855-10979044,10979130-10979198,
           10980061-10980187,10980562-10980824,10980928-10981076,
           10981186-10981260,10983391-10983462,10983554-10983692,
           10983796-10984265,10985278-10985854,10986997-10987063
          Length = 863

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -1

Query: 611 HYCFTAENRQSGGTYPRGLTRGPTTSNYTNYNFCGSIFITRCYSFTVEINSEHLLSTYFI 432
           HY    EN +    Y R    GP  + YT  +F  +     CYS   ++ S++L+   F+
Sbjct: 51  HYTDAGENHKVTTVY-RNAWWGPDRTLYTVRSFPSAEGQRNCYSLPNDVRSKYLVRLKFL 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,887,601
Number of Sequences: 37544
Number of extensions: 334307
Number of successful extensions: 701
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)