Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060523.seq
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.58 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    24   1.0  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   3.1  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    22   4.1  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    22   4.1  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   7.1  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    21   7.1  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    21   7.1  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 114 NSKRYVGMLRDLLGLELPKTCWYKFVD 34
           +SK+ V +L    G   P   WYKFV+
Sbjct: 245 HSKQNVALLCPAQGFPSPSFRWYKFVE 271


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +3

Query: 60  LGALARVNPSAYQ----HIVWN*QLQLHREHFQRNMIRSQL 170
           LG +  ++PS       +++ +  L +H++H Q+NM   +L
Sbjct: 287 LGTMLSIHPSKLDVEQMNLLHSNDLNMHQQHHQQNMSHEEL 327


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +1

Query: 181 YHICL---FTNPFMSKGVSFCDVVMM*WNV 261
           + +CL    T PF +    FC+V+M  WN+
Sbjct: 417 FRVCLVFTLTGPFFT----FCNVLMEMWNI 442


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 161 ITTLADTIIFVCSQIHSCQKVSLFVM 238
           + TL  TIIF  S  +  +  SLF++
Sbjct: 155 VATLTVTIIFFASYQYGTKTYSLFIV 180



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 301 LKYFSEVNF-LQFLHQLNLMWIKFQI 375
           L YF  +   LQ+ H LN++ +++Q+
Sbjct: 186 LPYFINLLMELQYCHYLNILRVRYQL 211


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 161 ITTLADTIIFVCSQIHSCQKVSLFVM 238
           + TL  TIIF  S  +  +  SLF++
Sbjct: 155 VATLTVTIIFFASYQYGTKTYSLFIV 180



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 301 LKYFSEVNF-LQFLHQLNLMWIKFQI 375
           L YF  +   LQ+ H LN++ +++Q+
Sbjct: 186 LPYFINLLMELQYCHYLNILRVRYQL 211


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 321 DFTKILEFASLMLDQFSQYKNIPSH 247
           DF   L F      Q+ ++KN P H
Sbjct: 328 DFLASLAFRIFQSTQYVRHKNTPYH 352


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 441 LNID*LFDFGDYPNSLRRILSRDLKLNPHK 352
           + ID LFD  DY  ++ R    D+ ++  K
Sbjct: 110 IEIDSLFDGIDYSTTITRARFEDINMDYFK 139


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 441 LNID*LFDFGDYPNSLRRILSRDLKLNPHK 352
           + ID LFD  DY  ++ R    D+ ++  K
Sbjct: 110 IEIDSLFDGIDYSTTITRARFEDINMDYFK 139


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,292
Number of Sequences: 336
Number of extensions: 3464
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)