Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060523.seq
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po...    27   1.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.8  

>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 189

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 408 YPNSLRRILSRDLKLNPHKIQLVQELKEVDFTKILEFASLML 283
           YP  +R +L RD    P K  L++ LK      +L  AS++L
Sbjct: 122 YPIKVRAVLKRDYLKEPRKFSLIRLLKSP--MMLLSLASVVL 161


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 493 TGLLKFFSHCLIKLVLAYTPQILFNSKQTSHDYVGTII-IVKSLHDERGLFPSKVTHG 663
           T L  FF      L L + PQ L +++ TS  ++  ++  + S  +E G   S + HG
Sbjct: 613 TNLPTFFDQLKKNLTLFHIPQFLLSNESTSSKFLNILLRFLLSRIEELG--SSDIRHG 668


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,887
Number of Sequences: 5004
Number of extensions: 57355
Number of successful extensions: 168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)