Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060523.seq
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0496 + 25631832-25631972,25632094-25632160,25634993-256350...    35   0.052

>04_04_0496 +
           25631832-25631972,25632094-25632160,25634993-25635054,
           25636173-25636248,25636355-25636429,25637768-25637825,
           25637955-25638207,25639030-25639037,25639159-25639411,
           25639503-25639605,25639750-25639852,25639947-25640160
          Length = 470

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = -1

Query: 435 ID*LFDFGDYPNSLRRILSRDL-KLNPHKIQLVQELKEVDFTKILEFASL 289
           +D +F FGDYP  +R ILS +L K  P + +L+Q  K VDF  I  + ++
Sbjct: 249 LDPIF-FGDYPREMREILSSNLPKFTPEEKKLLQNNK-VDFIGINHYTAI 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,476,629
Number of Sequences: 37544
Number of extensions: 310473
Number of successful extensions: 765
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)