Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060523.seq
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)           42   4e-04
SB_44251| Best HMM Match : Transposase_5 (HMM E-Value=0.072)           34   0.12 
SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_55643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_53162| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_19725| Best HMM Match : MgtE_N (HMM E-Value=1.4)                    29   3.5  
SB_8818| Best HMM Match : I-set (HMM E-Value=0)                        29   3.5  

>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
          Length = 999

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 23/134 (17%)
 Frame = -1

Query: 420 DFGDYPNSLRRILSRDLKLNPHKIQLVQELKEVD----------FTKILEFASLMLDQ-- 277
           + G    SLRR+L+ DL L P+KIQ+  +L + D          F  +LE     L+   
Sbjct: 507 ELGMTRESLRRVLTSDLHLYPYKIQIKPKLTDADKEKRVTMCKWFCNVLENDENFLENVW 566

Query: 276 FSQYKNIPSHHHNITKRDTF*HEWICEQ-----------TNMIVSARVVIGSYFFENVRG 130
           FS   +     H  TK + F    + E+           T   +S   +IG ++FE+  G
Sbjct: 567 FSDEAHFLLSGHVNTKNNIFWGSKVPEEVLQRPLHSVKCTAWAMSKHGIIGPFWFEDDDG 626

Query: 129 EAVTVNSKRYVGML 88
            + TVN +RY+ +L
Sbjct: 627 RSQTVNKERYIAVL 640


>SB_44251| Best HMM Match : Transposase_5 (HMM E-Value=0.072)
          Length = 221

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -1

Query: 420 DFGDYPNSLRRILSRDLKLNPHKIQLVQELKEVDFTK 310
           + G    SLRR+L+ DL L P+KIQ+  +L + D  K
Sbjct: 106 ELGMTRESLRRVLTSDLHLYPYKIQIKHKLSDADKEK 142


>SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1413

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 411 DYPNSLRRILSRDLKLNPHKIQLVQELKE--VDFTKILEFASLMLDQFSQYKNIPSHHH 241
           DY NS+R +     K++  +I LV+ELK+  VD  K+L +     D    Y  I    H
Sbjct: 570 DYDNSVRMVNKEYGKMDFSEIDLVEELKKRGVDDDKLLPYYPYRDDGKKLYSKIKEFVH 628


>SB_55643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +2

Query: 539 LHILRKFYSTLNKPRMITL 595
           L ILR+FY++ +KPR+ITL
Sbjct: 89  LKILREFYASQSKPRIITL 107


>SB_53162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 962

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +2

Query: 539 LHILRKFYSTLNKPRMITL 595
           L ILR+FY++ +KPR+ITL
Sbjct: 89  LKILREFYASQSKPRIITL 107


>SB_19725| Best HMM Match : MgtE_N (HMM E-Value=1.4)
          Length = 201

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +2

Query: 539 LHILRKFYSTLNKPRMITL 595
           L ILR+FY++ +KPR+ITL
Sbjct: 109 LKILREFYASQSKPRIITL 127


>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2787

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -1

Query: 162  IGSYFFENVRGEAVTVNSKRYVGMLRDLLGLELPKTCWYKFVDVIPEVG 16
            I   F E+  GE +TV + + + ++ ++ G   P   WYK    + + G
Sbjct: 2122 IAPMFVEDDTGEPITVEAGKELNVIMNIRGNPRPDVNWYKDGSFLQQTG 2170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,891,123
Number of Sequences: 59808
Number of extensions: 396990
Number of successful extensions: 870
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)