Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060523.seq
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70686-9|CAA94614.3|  915|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z27079-12|CAD44154.1|   92|Caenorhabditis elegans Hypothetical p...    28   7.1  
AL021472-3|CAA16300.1|  259|Caenorhabditis elegans Hypothetical ...    28   7.1  

>Z70686-9|CAA94614.3|  915|Caenorhabditis elegans Hypothetical
           protein R10H10.7 protein.
          Length = 915

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 330 SVLAPVESYVD*VSNHV-TRFSLSCSGNPQSRKANLCLIPFVKYAGELNVFSVM 488
           S +  V++ V   S+H+  + SL+C  +     A + LI F+K AG  N F V+
Sbjct: 615 SRIKDVKNLVGIYSSHILNQVSLACMSSDNYHLAPVLLISFLKIAGIGNHFDVL 668


>Z27079-12|CAD44154.1|   92|Caenorhabditis elegans Hypothetical
           protein T05G5.12 protein.
          Length = 92

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -1

Query: 279 QFSQYKNIPSHHHNITKRDTF*HEWICEQTNMIVSARVVIGSYFFENVRGE--AVTVNSK 106
           QF+ YK + S   +  K++TF ++ + E   M V  +   GS           + T +SK
Sbjct: 6   QFTAYKKVESDEQDSEKQNTFNYQKLSESETMPVHQKTRKGSNHSNASTASTCSTTSSSK 65

Query: 105 RY 100
           RY
Sbjct: 66  RY 67


>AL021472-3|CAA16300.1|  259|Caenorhabditis elegans Hypothetical
           protein Y17D7B.3 protein.
          Length = 259

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 262 FILRELVKHQRCKLKYFSEVNFLQFLHQLNL-MWIKF 369
           F+L  L K +R ++  F + NFL FL  LN  + IKF
Sbjct: 52  FLLYSLNKQKRWEISNFLDQNFLGFLKNLNFNVDIKF 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,112,646
Number of Sequences: 27780
Number of extensions: 306079
Number of successful extensions: 724
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)