Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060523.seq
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.7  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   8.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   8.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 144 ENVRGEAVTVNSKRYVGMLRDLLGLELPKTCWYKFVD 34
           +N+ G  ++  SK  + +L    G  +P   WYKF++
Sbjct: 217 DNING--LSTESKADLPLLCPAQGFPVPVHRWYKFIE 251


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 637 LFPSKVTHGY 666
           L+PS+ THGY
Sbjct: 794 LYPSQTTHGY 803


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 88  QHTNISFGINSYSFTANIFKEI*SDHNSC*YYHI 189
           +H  IS   N+Y++  N +K++  ++    YY+I
Sbjct: 78  EHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNI 111


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 88  QHTNISFGINSYSFTANIFKEI*SDHNSC*YYHI 189
           +H  IS   N+Y++  N +K++  ++    YY+I
Sbjct: 78  EHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNI 111


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 535 VLAYTPQILFNSKQTSHDYVGTI 603
           VL  TP+    +    HD++GT+
Sbjct: 89  VLGATPRDFLQNLDALHDHLGTL 111


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 535 VLAYTPQILFNSKQTSHDYVGTI 603
           VL  TP+    +    HD++GT+
Sbjct: 89  VLGATPRDFLQNLDALHDHLGTL 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,383
Number of Sequences: 438
Number of extensions: 3635
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)