Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060523.seq
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37900.1 68418.m04566 seven in absentia (SINA) family protein...    28   6.6  
At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein con...    28   6.6  
At4g17540.1 68417.m02623 expressed protein                             27   8.8  

>At5g37900.1 68418.m04566 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 241

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 183 SYLFVHKSIHVKRCLFL*CCDDVMECFYTER 275
           S+L+  KS H + C+F  C    ++C Y+ R
Sbjct: 71  SFLYGKKSTHEEECIFSLCSCPSLDCEYSGR 101


>At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
           thaliana]
          Length = 533

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = -1

Query: 417 FGDYPNSLRRILSRDLKLNPHKIQLVQELK-EVDFTKILEFASLMLDQFSQYKNIPSHHH 241
           FGDYP +++ I+    +L     + + +LK   DF  I  + S     FS++   P+H  
Sbjct: 317 FGDYPQTMKDIVGH--RLPKFTTEQIAKLKNSADFVGINYYTS----TFSKHLEKPNHAE 370

Query: 240 NITKRDTF*HEWICEQTNMI 181
              K+D+   EW  +  N I
Sbjct: 371 PKFKQDSL-VEWKNKNVNNI 389


>At4g17540.1 68417.m02623 expressed protein
          Length = 294

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -1

Query: 396 LRRILSRDLKLNPHKIQLV 340
           LRRI+  DLK++P K++LV
Sbjct: 248 LRRIIIEDLKVSPEKLKLV 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,055,689
Number of Sequences: 28952
Number of extensions: 277312
Number of successful extensions: 659
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)