Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060522.seq
         (710 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            25   1.8  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    24   4.1  
AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR prot...    23   9.5  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 232 LREELWSGEVTNDGATILKSIGVD-NPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXX 408
           L   L   +V  D     +++ VD NP      D + + D+E  D   ++T+        
Sbjct: 675 LESMLEYSDVQIDRTRFEEAVPVDLNPTIYYGPDYTVILDKEFEDDRVAITIRNLLGGTD 734

Query: 409 XXKLIEQKLH 438
             K +++KLH
Sbjct: 735 GPKAMKEKLH 744


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = +1

Query: 136 SCSDV--QFHRCYCHRRFGKE 192
           SCS    QF  CYC  +FG++
Sbjct: 401 SCSSFFQQFFHCYCPVKFGRK 421


>AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR
           protein.
          Length = 460

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 621 FCEMXLVI*KGSLSSVWSVRCFLNPLLMKPHLSSS 517
           F  M L++  GS+ ++ SV  F N  L K  LSSS
Sbjct: 43  FYYMPLLVVVGSIGNILSVLVFFNTKLKK--LSSS 75


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,150
Number of Sequences: 2352
Number of extensions: 11903
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72758970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)