Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060522.seq
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68318-10|CAA92697.1| 529|Caenorhabditis elegans Hypothetical p... 115 3e-26
U25632-1|AAA93233.1| 529|Caenorhabditis elegans CCT-2 protein. 115 3e-26
AL031268-2|CAA20331.1| 529|Caenorhabditis elegans Hypothetical ... 115 3e-26
Z66500-12|CAA91308.1| 549|Caenorhabditis elegans Hypothetical p... 90 1e-18
U07941-1|AAB05072.1| 549|Caenorhabditis elegans CCT-1 protein. 90 1e-18
Z49068-8|CAA88861.1| 540|Caenorhabditis elegans Hypothetical pr... 72 5e-13
U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein. 72 5e-13
Z35599-3|CAA84660.1| 542|Caenorhabditis elegans Hypothetical pr... 70 2e-12
Z32840-7|CAA83681.1| 542|Caenorhabditis elegans Hypothetical pr... 70 2e-12
U25698-1|AAA92843.1| 542|Caenorhabditis elegans CCT-5 protein. 70 2e-12
AC024136-4|AAF35963.3| 543|Caenorhabditis elegans Hypothetical ... 69 4e-12
AF067947-11|AAO25994.1| 455|Caenorhabditis elegans Hypothetical... 66 3e-11
AF067947-10|AAC19232.2| 535|Caenorhabditis elegans Hypothetical... 66 3e-11
AC024827-1|AAF60806.2| 581|Caenorhabditis elegans Hypothetical ... 61 9e-10
U13070-3|AAM22058.1| 429|Caenorhabditis elegans Chaperonin cont... 48 5e-06
U13070-2|AAC46642.1| 539|Caenorhabditis elegans Chaperonin cont... 48 5e-06
L36035-1|AAA28077.1| 568|Caenorhabditis elegans HSP60 protein. 43 2e-04
AC084153-6|AAK84594.1| 568|Caenorhabditis elegans Heat shock pr... 43 2e-04
>Z68318-10|CAA92697.1| 529|Caenorhabditis elegans Hypothetical
protein T21B10.7 protein.
Length = 529
Score = 115 bits (277), Expect = 3e-26
Identities = 75/150 (50%), Positives = 94/150 (62%)
Frame = +1
Query: 256 EVTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKL 435
+VTNDGATILKSIGVDNPAAK+LVDMS QD EVGDGTTSVTV KL+ Q++
Sbjct: 59 KVTNDGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRI 118
Query: 436 HPQTIIAGWRIASDAAKQALAEASLIIRRT*MRLH*EWI*KTSHGPH*AQRSFSNHKXHF 615
HPQTII+G+R A A+++L ++S I +R I +T+ G + S HK HF
Sbjct: 119 HPQTIISGYRRALGIAQESLKKSS-IESGDNIRDDLLKIARTTLG----SKILSQHKEHF 173
Query: 616 TKLAV*WQFCV*KGSXNLKSYPNYPKYLGG 705
+LAV + KGS NL + K LGG
Sbjct: 174 AQLAVDAVLRL-KGSGNLDAI-QIIKKLGG 201
Score = 66.1 bits (154), Expect = 2e-11
Identities = 31/47 (65%), Positives = 37/47 (78%)
Frame = +2
Query: 92 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVS 232
P++ILK+ R+SSF+GAIAIGDLVKSTLGPKGMDKIL+S
Sbjct: 3 PVQILKDNAQEERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILIS 49
>U25632-1|AAA93233.1| 529|Caenorhabditis elegans CCT-2 protein.
Length = 529
Score = 115 bits (277), Expect = 3e-26
Identities = 75/150 (50%), Positives = 94/150 (62%)
Frame = +1
Query: 256 EVTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKL 435
+VTNDGATILKSIGVDNPAAK+LVDMS QD EVGDGTTSVTV KL+ Q++
Sbjct: 59 KVTNDGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRI 118
Query: 436 HPQTIIAGWRIASDAAKQALAEASLIIRRT*MRLH*EWI*KTSHGPH*AQRSFSNHKXHF 615
HPQTII+G+R A A+++L ++S I +R I +T+ G + S HK HF
Sbjct: 119 HPQTIISGYRRALGIAQESLKKSS-IESGDNIRDDLLKIARTTLG----SKILSQHKEHF 173
Query: 616 TKLAV*WQFCV*KGSXNLKSYPNYPKYLGG 705
+LAV + KGS NL + K LGG
Sbjct: 174 AQLAVDAVLRL-KGSGNLDAI-QIIKKLGG 201
Score = 66.1 bits (154), Expect = 2e-11
Identities = 31/47 (65%), Positives = 37/47 (78%)
Frame = +2
Query: 92 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVS 232
P++ILK+ R+SSF+GAIAIGDLVKSTLGPKGMDKIL+S
Sbjct: 3 PVQILKDNAQEERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILIS 49
>AL031268-2|CAA20331.1| 529|Caenorhabditis elegans Hypothetical
protein T21B10.7 protein.
Length = 529
Score = 115 bits (277), Expect = 3e-26
Identities = 75/150 (50%), Positives = 94/150 (62%)
Frame = +1
Query: 256 EVTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKL 435
+VTNDGATILKSIGVDNPAAK+LVDMS QD EVGDGTTSVTV KL+ Q++
Sbjct: 59 KVTNDGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRI 118
Query: 436 HPQTIIAGWRIASDAAKQALAEASLIIRRT*MRLH*EWI*KTSHGPH*AQRSFSNHKXHF 615
HPQTII+G+R A A+++L ++S I +R I +T+ G + S HK HF
Sbjct: 119 HPQTIISGYRRALGIAQESLKKSS-IESGDNIRDDLLKIARTTLG----SKILSQHKEHF 173
Query: 616 TKLAV*WQFCV*KGSXNLKSYPNYPKYLGG 705
+LAV + KGS NL + K LGG
Sbjct: 174 AQLAVDAVLRL-KGSGNLDAI-QIIKKLGG 201
Score = 66.1 bits (154), Expect = 2e-11
Identities = 31/47 (65%), Positives = 37/47 (78%)
Frame = +2
Query: 92 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVS 232
P++ILK+ R+SSF+GAIAIGDLVKSTLGPKGMDKIL+S
Sbjct: 3 PVQILKDNAQEERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILIS 49
>Z66500-12|CAA91308.1| 549|Caenorhabditis elegans Hypothetical
protein T05C12.7 protein.
Length = 549
Score = 90.2 bits (214), Expect = 1e-18
Identities = 41/81 (50%), Positives = 60/81 (74%)
Frame = +1
Query: 259 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 438
VTNDGATILK + V++PA K+LV+++++QDEEVGDGTTSV + +L++QK+H
Sbjct: 58 VTNDGATILKQLEVEHPAGKVLVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVH 117
Query: 439 PQTIIAGWRIASDAAKQALAE 501
P TII G+R+A A + ++E
Sbjct: 118 PTTIINGYRLACKEAVKYISE 138
Score = 35.5 bits (78), Expect = 0.038
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +2
Query: 143 RMSSFIGAIAIGDLVKSTLGPKGMDKILV 229
R + A+AI ++VKS+LGP G+DK+LV
Sbjct: 22 RSQNVTAAVAIANIVKSSLGPVGLDKMLV 50
>U07941-1|AAB05072.1| 549|Caenorhabditis elegans CCT-1 protein.
Length = 549
Score = 90.2 bits (214), Expect = 1e-18
Identities = 41/81 (50%), Positives = 60/81 (74%)
Frame = +1
Query: 259 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 438
VTNDGATILK + V++PA K+LV+++++QDEEVGDGTTSV + +L++QK+H
Sbjct: 58 VTNDGATILKQLEVEHPAGKVLVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVH 117
Query: 439 PQTIIAGWRIASDAAKQALAE 501
P TII G+R+A A + ++E
Sbjct: 118 PTTIINGYRLACKEAVKYISE 138
Score = 35.5 bits (78), Expect = 0.038
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +2
Query: 143 RMSSFIGAIAIGDLVKSTLGPKGMDKILV 229
R + A+AI ++VKS+LGP G+DK+LV
Sbjct: 22 RSQNVTAAVAIANIVKSSLGPVGLDKMLV 50
>Z49068-8|CAA88861.1| 540|Caenorhabditis elegans Hypothetical
protein K01C8.10 protein.
Length = 540
Score = 71.7 bits (168), Expect = 5e-13
Identities = 36/83 (43%), Positives = 51/83 (61%)
Frame = +1
Query: 259 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 438
+TNDGATIL + V +P AK+LV++SK QD E GDGTT+V V L+ + +H
Sbjct: 69 ITNDGATILNQMSVIHPTAKMLVELSKAQDIEAGDGTTTVVVMAGALLDAAQNLLSKGIH 128
Query: 439 PQTIIAGWRIASDAAKQALAEAS 507
P TI ++ A+ A++ L E S
Sbjct: 129 PTTISESFQSAAAEAEKILDEMS 151
Score = 35.5 bits (78), Expect = 0.038
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = +2
Query: 143 RMSSFIGAIAIGDLVKSTLGPKGMDKILVS 232
R S+ + A A+ D V+++LGP+GMDK++ S
Sbjct: 33 RNSNIVAAKAVADAVRTSLGPRGMDKMIQS 62
>U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein.
Length = 540
Score = 71.7 bits (168), Expect = 5e-13
Identities = 36/83 (43%), Positives = 51/83 (61%)
Frame = +1
Query: 259 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 438
+TNDGATIL + V +P AK+LV++SK QD E GDGTT+V V L+ + +H
Sbjct: 69 ITNDGATILNQMSVIHPTAKMLVELSKAQDIEAGDGTTTVVVMAGALLDAAQNLLSKGIH 128
Query: 439 PQTIIAGWRIASDAAKQALAEAS 507
P TI ++ A+ A++ L E S
Sbjct: 129 PTTISESFQSAAAEAEKILDEMS 151
Score = 35.5 bits (78), Expect = 0.038
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = +2
Query: 143 RMSSFIGAIAIGDLVKSTLGPKGMDKILVS 232
R S+ + A A+ D V+++LGP+GMDK++ S
Sbjct: 33 RNSNIVAAKAVADAVRTSLGPRGMDKMIQS 62
>Z35599-3|CAA84660.1| 542|Caenorhabditis elegans Hypothetical
protein C07G2.3a protein.
Length = 542
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/83 (40%), Positives = 50/83 (60%)
Frame = +1
Query: 259 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 438
+TNDGATI++ + V + AK++V++SK QD E+GDGTT V V KLI++ +H
Sbjct: 71 ITNDGATIMEKMDVQHHVAKLMVELSKSQDHEIGDGTTGVVVLAGALLEEAEKLIDRGIH 130
Query: 439 PQTIIAGWRIASDAAKQALAEAS 507
P I G+ +A A + L S
Sbjct: 131 PIKIADGFDLACKKALETLDSIS 153
Score = 31.9 bits (69), Expect = 0.47
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +2
Query: 149 SSFIGAIAIGDLVKSTLGPKGMDKILVS 232
S + A A+ + ++++LGP+G+DK+LVS
Sbjct: 37 SHILAARAVANTLRTSLGPRGLDKMLVS 64
>Z32840-7|CAA83681.1| 542|Caenorhabditis elegans Hypothetical
protein C07G2.3a protein.
Length = 542
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/83 (40%), Positives = 50/83 (60%)
Frame = +1
Query: 259 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 438
+TNDGATI++ + V + AK++V++SK QD E+GDGTT V V KLI++ +H
Sbjct: 71 ITNDGATIMEKMDVQHHVAKLMVELSKSQDHEIGDGTTGVVVLAGALLEEAEKLIDRGIH 130
Query: 439 PQTIIAGWRIASDAAKQALAEAS 507
P I G+ +A A + L S
Sbjct: 131 PIKIADGFDLACKKALETLDSIS 153
Score = 31.9 bits (69), Expect = 0.47
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +2
Query: 149 SSFIGAIAIGDLVKSTLGPKGMDKILVS 232
S + A A+ + ++++LGP+G+DK+LVS
Sbjct: 37 SHILAARAVANTLRTSLGPRGLDKMLVS 64
>U25698-1|AAA92843.1| 542|Caenorhabditis elegans CCT-5 protein.
Length = 542
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/83 (40%), Positives = 50/83 (60%)
Frame = +1
Query: 259 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 438
+TNDGATI++ + V + AK++V++SK QD E+GDGTT V V KLI++ +H
Sbjct: 71 ITNDGATIMEKMDVQHHVAKLMVELSKSQDHEIGDGTTGVVVLAGALLEEAEKLIDRGIH 130
Query: 439 PQTIIAGWRIASDAAKQALAEAS 507
P I G+ +A A + L S
Sbjct: 131 PIKIADGFDLACKKALETLDSIS 153
Score = 31.9 bits (69), Expect = 0.47
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +2
Query: 149 SSFIGAIAIGDLVKSTLGPKGMDKILVS 232
S + A A+ + ++++LGP+G+DK+LVS
Sbjct: 37 SHILAARAVANTLRTSLGPRGLDKMLVS 64
>AC024136-4|AAF35963.3| 543|Caenorhabditis elegans Hypothetical
protein F54A3.3 protein.
Length = 543
Score = 68.5 bits (160), Expect = 4e-12
Identities = 34/83 (40%), Positives = 48/83 (57%)
Frame = +1
Query: 223 LSFLREELWSGEVTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXX 402
L L + + +TNDG IL+ I V +PAAK ++++++ QDEE GDGTTSV +
Sbjct: 49 LKMLMDPMGGIVMTNDGNAILREITVKHPAAKSMIEIARTQDEETGDGTTSVIILAGEVM 108
Query: 403 XXXXKLIEQKLHPQTIIAGWRIA 471
+EQK HP II +R A
Sbjct: 109 AHAQTYLEQKTHPTLIIKAYRQA 131
>AF067947-11|AAO25994.1| 455|Caenorhabditis elegans Hypothetical
protein T10B5.5b protein.
Length = 455
Score = 65.7 bits (153), Expect = 3e-11
Identities = 35/86 (40%), Positives = 49/86 (56%)
Frame = +1
Query: 259 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 438
++NDGATILK + + PAA +VD+++ QD EVGDGTTSV V IE +H
Sbjct: 58 ISNDGATILKLLDIVFPAASTMVDIARSQDAEVGDGTTSVVVLAAEILKQMKPFIEDGVH 117
Query: 439 PQTIIAGWRIASDAAKQALAEASLII 516
PQ +I A + + LA+ + I
Sbjct: 118 PQLLIRAIGKACEKTLKNLADLEIKI 143
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 92 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILV 229
PI +LK+ +S+ + D +++TLGP+G+DK++V
Sbjct: 5 PIILLKDGTENKQGKGQIISNINACQVVADSIRTTLGPRGLDKLIV 50
>AF067947-10|AAC19232.2| 535|Caenorhabditis elegans Hypothetical
protein T10B5.5a protein.
Length = 535
Score = 65.7 bits (153), Expect = 3e-11
Identities = 35/86 (40%), Positives = 49/86 (56%)
Frame = +1
Query: 259 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 438
++NDGATILK + + PAA +VD+++ QD EVGDGTTSV V IE +H
Sbjct: 58 ISNDGATILKLLDIVFPAASTMVDIARSQDAEVGDGTTSVVVLAAEILKQMKPFIEDGVH 117
Query: 439 PQTIIAGWRIASDAAKQALAEASLII 516
PQ +I A + + LA+ + I
Sbjct: 118 PQLLIRAIGKACEKTLKNLADLEIKI 143
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 92 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILV 229
PI +LK+ +S+ + D +++TLGP+G+DK++V
Sbjct: 5 PIILLKDGTENKQGKGQIISNINACQVVADSIRTTLGPRGLDKLIV 50
>AC024827-1|AAF60806.2| 581|Caenorhabditis elegans Hypothetical
protein Y55F3AR.3 protein.
Length = 581
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/79 (34%), Positives = 48/79 (60%)
Frame = +1
Query: 259 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 438
VTND ATILK + + +PAA+I++ +++Q++++GD T +V + LI +
Sbjct: 64 VTNDAATILKELEIQHPAARIIIMATEMQEKQIGDNTNTVVILAAALLEHAANLIHMGMT 123
Query: 439 PQTIIAGWRIASDAAKQAL 495
PQ + AG+ A++ A + L
Sbjct: 124 PQEVAAGYEQAAEKALEIL 142
>U13070-3|AAM22058.1| 429|Caenorhabditis elegans Chaperonin
containing tcp-1 protein6, isoform b protein.
Length = 429
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/80 (27%), Positives = 39/80 (48%)
Frame = +1
Query: 256 EVTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKL 435
++T DG +L + + +P A ++ S QD+ GDGTTS + L+ + L
Sbjct: 55 KLTKDGNVLLHEMAIQHPTASMIAKASTAQDDVTGDGTTSTVLLIGELLKQAESLVLEGL 114
Query: 436 HPQTIIAGWRIASDAAKQAL 495
HP+ + G+ A+ + L
Sbjct: 115 HPRIVTEGFEWANTKTLELL 134
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 161 GAIAIGDLVKSTLGPKGMDKILVS 232
GA + D+++S LGPKG K+LVS
Sbjct: 26 GARGLQDVMRSNLGPKGTLKMLVS 49
>U13070-2|AAC46642.1| 539|Caenorhabditis elegans Chaperonin
containing tcp-1 protein6, isoform a protein.
Length = 539
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/80 (27%), Positives = 39/80 (48%)
Frame = +1
Query: 256 EVTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKL 435
++T DG +L + + +P A ++ S QD+ GDGTTS + L+ + L
Sbjct: 55 KLTKDGNVLLHEMAIQHPTASMIAKASTAQDDVTGDGTTSTVLLIGELLKQAESLVLEGL 114
Query: 436 HPQTIIAGWRIASDAAKQAL 495
HP+ + G+ A+ + L
Sbjct: 115 HPRIVTEGFEWANTKTLELL 134
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 161 GAIAIGDLVKSTLGPKGMDKILVS 232
GA + D+++S LGPKG K+LVS
Sbjct: 26 GARGLQDVMRSNLGPKGTLKMLVS 49
>L36035-1|AAA28077.1| 568|Caenorhabditis elegans HSP60 protein.
Length = 568
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Frame = +1
Query: 238 EELW-SGEVTNDGATILKSIGV----DNPAAKILVDMSKVQDEEVGDGTTSVTV 384
E+ W S ++T DG T+ KSI + N AK++ D++ +EE GDGTT TV
Sbjct: 56 EQSWGSPKITKDGVTVAKSIDLKDKYQNLGAKLIQDVANKANEEAGDGTTCATV 109
>AC084153-6|AAK84594.1| 568|Caenorhabditis elegans Heat shock
protein protein 60 protein.
Length = 568
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Frame = +1
Query: 238 EELW-SGEVTNDGATILKSIGV----DNPAAKILVDMSKVQDEEVGDGTTSVTV 384
E+ W S ++T DG T+ KSI + N AK++ D++ +EE GDGTT TV
Sbjct: 56 EQSWGSPKITKDGVTVAKSIDLKDKYQNLGAKLIQDVANKANEEAGDGTTCATV 109
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,583,004
Number of Sequences: 27780
Number of extensions: 269335
Number of successful extensions: 594
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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