Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060522.seq
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 110 1e-24
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 83 2e-16
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 74 8e-14
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 71 1e-12
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 64 7e-11
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 61 6e-10
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 60 2e-09
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 57 1e-08
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 57 1e-08
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 53 2e-07
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 38 0.007
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 38 0.007
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 35 0.046
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 34 0.081
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 33 0.14
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 33 0.19
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 33 0.19
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 33 0.19
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 33 0.19
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 30 1.3
At3g61840.1 68416.m06943 expressed protein 28 5.3
At4g02920.2 68417.m00396 expressed protein 27 9.3
At4g02920.1 68417.m00395 expressed protein 27 9.3
At1g07240.1 68414.m00770 UDP-glucoronosyl/UDP-glucosyl transfera... 27 9.3
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 110 bits (264), Expect = 1e-24
Identities = 67/150 (44%), Positives = 91/150 (60%)
Frame = +1
Query: 259 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 438
VTNDGATILKS+ +DNPAAK+LVD+SKVQD+EVGDGTTSV V KL+ K+H
Sbjct: 58 VTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIH 117
Query: 439 PQTIIAGWRIASDAAKQALAEASLIIRRT*MRLH*EWI*KTSHGPH*AQRSFSNHKXHFT 618
P TIIAG+R+AS+ A+ AL + + + + + + K + + S K HF
Sbjct: 118 PMTIIAGYRMASECARNALLKRVIDNKDNAEKFRSDLL-KIAMTTL-CSKILSQDKEHFA 175
Query: 619 KLAV*WQFCV*KGSXNLKSYPNYPKYLGGL 708
++AV F + KGS NL++ K G L
Sbjct: 176 EMAVDAVFRL-KGSTNLEAIQIIKKPGGSL 204
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/48 (60%), Positives = 34/48 (70%)
Frame = +2
Query: 98 RILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGR 241
+I K+ RM+SF+GA+AI DLVKSTLGPKGMDKIL S GR
Sbjct: 5 KIFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGR 52
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +3
Query: 477 CSQTSSCRS*LDHQKNLNEASLRVDLENIARTTLSSKILFKSQGAFHKIS 626
C++ + + +D++ N + R DL IA TTL SKIL + + F +++
Sbjct: 131 CARNALLKRVIDNKDNAEK--FRSDLLKIAMTTLCSKILSQDKEHFAEMA 178
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 82.6 bits (195), Expect = 2e-16
Identities = 36/80 (45%), Positives = 57/80 (71%)
Frame = +1
Query: 232 LREELWSGEVTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXX 411
L +++ +TNDGATIL+ + V++PAAK+LV+++++QD EVGDGTTSV +
Sbjct: 48 LVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRA 107
Query: 412 XKLIEQKLHPQTIIAGWRIA 471
L+ K+HP +II+G+R+A
Sbjct: 108 NDLVRNKIHPTSIISGYRLA 127
Score = 30.7 bits (66), Expect = 1.00
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 143 RMSSFIGAIAIGDLVKSTLGPKGMDKILV 229
R + + A+ ++VK++LGP G+DK+LV
Sbjct: 21 RTQNVMACQAVSNIVKTSLGPVGLDKMLV 49
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 74.1 bits (174), Expect = 8e-14
Identities = 38/95 (40%), Positives = 57/95 (60%)
Frame = +1
Query: 232 LREELWSGEVTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXX 411
+ ++ S ++NDGATI+K + + +PAAKILVD++K QD EVGDGTT+V +
Sbjct: 52 IHDDKGSVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEA 111
Query: 412 XKLIEQKLHPQTIIAGWRIASDAAKQALAEASLII 516
IE +H Q +I +R AS A + E ++ I
Sbjct: 112 KPFIEDGVHAQNLIRSYRTASTLAIAKVKELAVSI 146
Score = 35.9 bits (79), Expect = 0.027
Identities = 13/27 (48%), Positives = 22/27 (81%)
Frame = +2
Query: 146 MSSFIGAIAIGDLVKSTLGPKGMDKIL 226
+S+ A+GD+V++TLGP+GMDK++
Sbjct: 26 VSNINACTAVGDVVRTTLGPRGMDKLI 52
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/79 (41%), Positives = 50/79 (63%)
Frame = +1
Query: 259 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 438
+TNDGATIL+ + VDN AK++V++S+ QD E+GDGTT V V + +++ +H
Sbjct: 66 ITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIH 125
Query: 439 PQTIIAGWRIASDAAKQAL 495
P I G+ +AS A + L
Sbjct: 126 PIRIAEGYEMASRVAVEHL 144
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 170 AIGDLVKSTLGPKGMDKIL 226
A+ +++S+LGPKGMDK+L
Sbjct: 39 AVARILRSSLGPKGMDKML 57
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 64.5 bits (150), Expect = 7e-11
Identities = 30/64 (46%), Positives = 40/64 (62%)
Frame = +1
Query: 259 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 438
VTNDG IL+ + V +PAAK ++++S+ QDEEVGDGTTSV V +E+ H
Sbjct: 57 VTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYH 116
Query: 439 PQTI 450
P I
Sbjct: 117 PTVI 120
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 61.3 bits (142), Expect = 6e-10
Identities = 30/64 (46%), Positives = 38/64 (59%)
Frame = +1
Query: 259 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 438
+TNDGATIL + V PAAK+LV++SK QD GDGTT+V V L+ +H
Sbjct: 66 ITNDGATILNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIH 125
Query: 439 PQTI 450
P I
Sbjct: 126 PTVI 129
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 143 RMSSFIGAIAIGDLVKSTLGPKGMDKIL 226
R ++ A A+ D V+++LGPKGMDK++
Sbjct: 30 RFANINSARAVSDAVRTSLGPKGMDKMI 57
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/81 (38%), Positives = 43/81 (53%)
Frame = +1
Query: 259 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 438
VTND ATI+ + + +PAAK+LV +K Q EE+GDG +LI LH
Sbjct: 65 VTNDAATIVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLH 124
Query: 439 PQTIIAGWRIASDAAKQALAE 501
P II+G+ A A + L +
Sbjct: 125 PSEIISGYTKAVSKAVEILEQ 145
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/80 (32%), Positives = 44/80 (55%)
Frame = +1
Query: 256 EVTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKL 435
++T DG T+LK + + NP A ++ + QD+ GDGTTS + + I++ +
Sbjct: 54 KLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGM 113
Query: 436 HPQTIIAGWRIASDAAKQAL 495
HP+ ++ G+ IA A Q L
Sbjct: 114 HPRVLVDGFEIAKRATLQFL 133
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/80 (32%), Positives = 44/80 (55%)
Frame = +1
Query: 256 EVTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKL 435
++T DG T+LK + + NP A ++ + QD+ GDGTTS + + I++ +
Sbjct: 54 KLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGM 113
Query: 436 HPQTIIAGWRIASDAAKQAL 495
HP+ ++ G+ IA A Q L
Sbjct: 114 HPRVLVDGFEIAKRATLQFL 133
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/66 (37%), Positives = 39/66 (59%)
Frame = +1
Query: 298 VDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASD 477
VDN AK++V++S+ QD E+GDGTT V V + +++ +HP I G+ +AS
Sbjct: 3 VDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASR 62
Query: 478 AAKQAL 495
A + L
Sbjct: 63 VAVEHL 68
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 37.9 bits (84), Expect = 0.007
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Frame = +1
Query: 238 EELWSG-EVTNDGATILKSIG----VDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXX 402
E+ W +VT DG T+ KSI + N A ++ ++ ++ GDGTT TV
Sbjct: 71 EQSWGAPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATNDVAGDGTTCATVLTRAIF 130
Query: 403 XXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASLII 516
K + ++ + G +A DA L + +I
Sbjct: 131 AEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKSKARMI 168
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 37.9 bits (84), Expect = 0.007
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Frame = +1
Query: 238 EELWSG-EVTNDGATILKSIG----VDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXX 402
E+ W +VT DG T+ KSI + N A ++ ++ ++ GDGTT TV
Sbjct: 72 EQSWGAPKVTKDGVTVAKSIEFKDRIKNVGASLVKQVANATNDVAGDGTTCATVLTRAIF 131
Query: 403 XXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASLII 516
K + ++ + G ++A D L + +I
Sbjct: 132 TEGCKSVAAGMNAMDLRRGIKLAVDTVVTNLQSRARMI 169
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 35.1 bits (77), Expect = 0.046
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Frame = +1
Query: 238 EELWSGEVTNDGATILKSI----GVDNPAAKILVDMSKVQDEEVGDGTTSVTV 384
+E S +V NDG TI ++I ++N A ++ +++ ++ GDGTT+ ++
Sbjct: 86 DEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGTTTASI 138
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 34.3 bits (75), Expect = 0.081
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +1
Query: 256 EVTNDGATILKSIG----VDNPAAKILVDMSKVQDEEVGDGTTSVTV 384
+V NDG TI KSI ++N A ++ +++ +E GDGTT+ +
Sbjct: 79 KVINDGVTIAKSIELPDTIENAGATLIQEVAIKMNESAGDGTTTAII 125
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +1
Query: 232 LREELWSGEVTNDGATILKSIGVDNPA----AKILVDMSKVQDEEVGDGTTSVTVXXXXX 399
L + S + NDG T+ + + +++P AK++ + ++ GDGTT+ V
Sbjct: 91 LESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGL 150
Query: 400 XXXXXKLIEQKLHPQTIIAG 459
K++ +P I G
Sbjct: 151 IAEGVKVVAAGANPVLITRG 170
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 33.1 bits (72), Expect = 0.19
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +1
Query: 256 EVTNDGATILKSIGVD----NPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLI 423
++T DG T+ KSI N A+++ ++ ++ GDGTT TV K +
Sbjct: 78 KITKDGVTVAKSISFQAKAKNIGAELVKQVASATNKVAGDGTTCATVLTQAILIEGCKSV 137
Query: 424 EQKLHPQTIIAGWRIASDAAKQALAEASLII 516
++ + G +A A L +++I
Sbjct: 138 AAGVNVMDLRVGINMAIAAVVSDLKSRAVMI 168
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +1
Query: 232 LREELWSGEVTNDGATILKSIGVDNPA----AKILVDMSKVQDEEVGDGTTSVTVXXXXX 399
L + S + NDG T+ + + +++P AK++ + ++ GDGTT+ V
Sbjct: 91 LESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGF 150
Query: 400 XXXXXKLIEQKLHPQTIIAG 459
K++ +P I G
Sbjct: 151 IAEGVKVVAAGANPVLITRG 170
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +1
Query: 232 LREELWSGEVTNDGATILKSIGVDNPA----AKILVDMSKVQDEEVGDGTTSVTVXXXXX 399
L + S + NDG T+ + + +++P AK++ + ++ GDGTT+ V
Sbjct: 95 LESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGF 154
Query: 400 XXXXXKLIEQKLHPQTIIAG 459
K++ +P I G
Sbjct: 155 IAEGVKVVAAGANPVLITRG 174
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +1
Query: 232 LREELWSGEVTNDGATILKSIGVDNPA----AKILVDMSKVQDEEVGDGTTSVTVXXXXX 399
L + S + NDG T+ + + +++P AK++ + ++ GDGTT+ V
Sbjct: 95 LESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGF 154
Query: 400 XXXXXKLIEQKLHPQTIIAG 459
K++ +P I G
Sbjct: 155 IAEGVKVVAAGANPVLITRG 174
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +1
Query: 259 VTNDGATILKSIGVDNP----AAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIE 426
+ NDG T+LK I +++P K++ ++ GDG+T+ + K+I
Sbjct: 88 IVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVIS 147
Query: 427 QKLHPQTIIAG 459
+P + G
Sbjct: 148 AGTNPIQVARG 158
>At3g61840.1 68416.m06943 expressed protein
Length = 175
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 305 LSTPIDFNIVAPSFVTSPDQSSSRRKLRSYPFLWD 201
LS+P+ V+ S ++SPD S SR S PF W+
Sbjct: 43 LSSPVTTKDVSLSLMSSPDDSLSR---ASIPFSWE 74
>At4g02920.2 68417.m00396 expressed protein
Length = 419
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 155 NWTSEQLQLSPLLLHF*GYELDLMIPFWMK 66
N T++ QLSPL+ HF +E D+ P +K
Sbjct: 211 NSTTKWRQLSPLIPHFQRFESDVFTPAKLK 240
>At4g02920.1 68417.m00395 expressed protein
Length = 418
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 155 NWTSEQLQLSPLLLHF*GYELDLMIPFWMK 66
N T++ QLSPL+ HF +E D+ P +K
Sbjct: 210 NSTTKWRQLSPLIPHFQRFESDVFTPAKLK 239
>At1g07240.1 68414.m00770 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 480
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 274 ATILKSI-GVDNPAAKILVDMSKVQDEEVGDGTTS 375
AT ++S+ DNP K +++ S V + VGDG +S
Sbjct: 430 ATAVRSLMDSDNPVRKKVIEKSSVARKAVGDGGSS 464
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,825,308
Number of Sequences: 28952
Number of extensions: 251892
Number of successful extensions: 532
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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