Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060521.seq
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 87 2e-18
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 66 6e-12
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 58 1e-09
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 56 6e-09
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 54 2e-08
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 51 1e-07
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 46 7e-06
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 41 2e-04
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 30 0.27
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 87.0 bits (206), Expect = 2e-18
Identities = 50/115 (43%), Positives = 70/115 (60%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
LKSI +DN AAK+LV++SKVQD+EVGDGTTSV V ++ K+HPQ II G+
Sbjct: 67 LKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGY 126
Query: 436 RIASDAAKQALAEASFDHQKNLNEVH*EWI*KTSHGTTLSSKXLFXSQGAFHQIS 600
RIA+ A AL +S D+ + + + + TTLSSK L ++ F Q++
Sbjct: 127 RIATKTAIDALRASSIDNSSDPAKFRSDL--ENIARTTLSSKILSQNKNHFAQLA 179
Score = 77.4 bits (182), Expect = 2e-15
Identities = 40/67 (59%), Positives = 47/67 (70%)
Frame = +2
Query: 53 VSLNPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVE 232
+SLNP +I R+SSF+GAIA+GDLVKSTLGPKGMDKIL S +SG +
Sbjct: 1 MSLNPHQIFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQS--NSSGDIV 58
Query: 233 VTNDGAT 253
VTNDGAT
Sbjct: 59 VTNDGAT 65
Score = 49.6 bits (113), Expect = 4e-07
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = +2
Query: 554 AQRXFSNHKEHFTKLAVDAVLRLKXSGNXKAIQIIQISGGXLEE 685
+ + S +K HF +LAVDAVLRLK S N IQII+I GG L++
Sbjct: 164 SSKILSQNKNHFAQLAVDAVLRLKGSTNLDNIQIIKILGGKLDD 207
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 65.7 bits (153), Expect = 6e-12
Identities = 28/63 (44%), Positives = 44/63 (69%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
L + V++PA K+LV++++ QD+EVGDGTTSV + +L++ K+HP TII G+
Sbjct: 67 LSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGY 126
Query: 436 RIA 444
R+A
Sbjct: 127 RLA 129
Score = 44.4 bits (100), Expect = 2e-05
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = +2
Query: 116 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAT 253
R + + AI ++VKS+LGP G+DK+LV + G V VTNDGAT
Sbjct: 23 RNQNVLATTAIANVVKSSLGPVGLDKMLVD---DIGDVTVTNDGAT 65
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 58.0 bits (134), Expect = 1e-09
Identities = 27/73 (36%), Positives = 45/73 (61%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
L+ I V +PAAK ++++++ QDEEVGDGTTSV + L+++K+HP +I +
Sbjct: 65 LREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSF 124
Query: 436 RIASDAAKQALAE 474
+ A + A + E
Sbjct: 125 KQALEDALSIIDE 137
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 55.6 bits (128), Expect = 6e-09
Identities = 28/73 (38%), Positives = 41/73 (56%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
LK + V +PAAK+LVD+S QD E GDGTTSV + KL+++ +HP I +
Sbjct: 65 LKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESF 124
Query: 436 RIASDAAKQALAE 474
+ A+ + E
Sbjct: 125 QRAAGFTVDCMKE 137
Score = 46.0 bits (104), Expect = 5e-06
Identities = 21/46 (45%), Positives = 35/46 (76%)
Frame = +2
Query: 116 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAT 253
R+S+ + A ++ D ++++LGPKGMDK ++ G+ G+V +TNDGAT
Sbjct: 21 RLSNIMAARSVADAIRTSLGPKGMDK-MIQTGK--GEVILTNDGAT 63
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 54.0 bits (124), Expect = 2e-08
Identities = 28/73 (38%), Positives = 40/73 (54%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
+K + + +PAAK LVD+++ QD EVGDGTTSV V +E + II G+
Sbjct: 70 MKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGY 129
Query: 436 RIASDAAKQALAE 474
R A+ A + E
Sbjct: 130 RKAAQLAVNKIKE 142
Score = 44.4 bits (100), Expect = 2e-05
Identities = 21/63 (33%), Positives = 36/63 (57%)
Frame = +2
Query: 65 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTND 244
P+ +LK +S+ +A+ D +++TLGP G DK++V + G+V ++ND
Sbjct: 9 PVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVD---DRGEVVISND 65
Query: 245 GAT 253
GAT
Sbjct: 66 GAT 68
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 587 FTKLAVDAVLRLKXSG-NXKAIQIIQISGGXLEE 685
FTK+ VDAVL L N I I ++ GG +E+
Sbjct: 179 FTKMVVDAVLTLDQEDLNENMIGIKKVPGGAMED 212
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 51.2 bits (117), Expect = 1e-07
Identities = 27/71 (38%), Positives = 39/71 (54%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
L + V++ AK+LV +SK QD+E+GDGTT V V LI++ +HP I G+
Sbjct: 80 LDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGY 139
Query: 436 RIASDAAKQAL 468
A A + L
Sbjct: 140 EKACQVAVKHL 150
Score = 43.6 bits (98), Expect = 3e-05
Identities = 19/44 (43%), Positives = 31/44 (70%)
Frame = +2
Query: 122 SSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAT 253
S + + ++V+++LGP+G+DKIL+S G++ VTNDGAT
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILIS---PDGEITVTNDGAT 78
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 45.6 bits (103), Expect = 7e-06
Identities = 32/102 (31%), Positives = 46/102 (45%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
L + + NP A + + QD+ GDGTTSV + I + LHP I G+
Sbjct: 62 LTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGF 121
Query: 436 RIASDAAKQALAEASFDHQKNLNEVH*EWI*KTSHGTTLSSK 561
+A + A L D + + EV + KTS T +SSK
Sbjct: 122 NLAKNEALTFLDSFKTDFEVD-REVLLN-VAKTSLSTKISSK 161
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
++ + V +PAAK++VD ++ Q+ E+GD V V +I L P I G+
Sbjct: 72 IRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGY 131
Query: 436 RIASDAAKQALAEASFD 486
+A + L E D
Sbjct: 132 EMALSHTMEVLEEICAD 148
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 30.3 bits (65), Expect = 0.27
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +1
Query: 274 DNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASD 450
+N A+++ D++ +E GDGTT+ TV + + +P + G ++A D
Sbjct: 98 ENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVD 156
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 116 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAT 253
R S G + V TLGPKG + ++ + G ++T DG T
Sbjct: 44 RASLLTGVDTLARAVSVTLGPKGRNVLI---DQPFGSPKITKDGVT 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,586
Number of Sequences: 5004
Number of extensions: 41225
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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