Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060521.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 103 2e-22
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 78 6e-15
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 65 6e-11
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 61 9e-10
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 60 1e-09
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 54 8e-08
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 54 1e-07
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 44 1e-04
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 43 3e-04
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 40 0.001
10_08_0620 - 19321612-19323237 39 0.003
02_01_0024 + 159595-159801,159892-160017,160201-160338,160431-16... 31 0.64
06_01_0097 - 810283-810296,810398-810521,810974-811066,811144-81... 31 0.85
03_01_0305 - 2383187-2383298,2383606-2383684,2383762-2383867,238... 29 4.5
05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297... 28 6.0
03_01_0281 + 2160480-2162003 28 7.9
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 103 bits (246), Expect = 2e-22
Identities = 53/115 (46%), Positives = 77/115 (66%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
LKS+ +DNPAAK+LVD+SKVQD+EVGDGTTSV V KL+ K+HP TIIAG+
Sbjct: 64 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTIIAGY 123
Query: 436 RIASDAAKQALAEASFDHQKNLNEVH*EWI*KTSHGTTLSSKXLFXSQGAFHQIS 600
R+A + A+ AL E + D+++N+++ + + TTLSSK L + F +++
Sbjct: 124 RMAVECARNALLERTMDNKENIDKFRSDLM--NIAMTTLSSKILSQDKEYFAELA 176
Score = 70.5 bits (165), Expect = 1e-12
Identities = 37/61 (60%), Positives = 43/61 (70%)
Frame = +2
Query: 71 RILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGA 250
R+LK+ RM++FIGA+AI DLVK+TLGPKGMDKIL S GR V VTNDGA
Sbjct: 3 RVLKDDAVEEKGERARMAAFIGAMAIADLVKTTLGPKGMDKILQSTGRGR-SVTVTNDGA 61
Query: 251 T 253
T
Sbjct: 62 T 62
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/44 (54%), Positives = 33/44 (75%)
Frame = +2
Query: 554 AQRXFSNHKEHFTKLAVDAVLRLKXSGNXKAIQIIQISGGXLEE 685
+ + S KE+F +LAVDAVLRLK S N +AIQI++I GG L++
Sbjct: 161 SSKILSQDKEYFAELAVDAVLRLKGSTNLEAIQILKIPGGSLKD 204
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 78.2 bits (184), Expect = 6e-15
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
LKS+ +DNPAAK+LVD+SKVQD+EVGDGTTSV V KL+ K+HP TIIA
Sbjct: 65 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTIIAD- 123
Query: 436 RIASDAAKQALAEAS 480
+ SD A+ S
Sbjct: 124 KFRSDLMNIAMTTLS 138
Score = 69.3 bits (162), Expect = 3e-12
Identities = 36/61 (59%), Positives = 42/61 (68%)
Frame = +2
Query: 71 RILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGA 250
R+LK+ RM+SF+G +AI DLVK+TLGPKGMDKIL S GR V VTNDGA
Sbjct: 4 RLLKDDATEEKGERARMASFVGGMAISDLVKTTLGPKGMDKILQSTGRGR-SVTVTNDGA 62
Query: 251 T 253
T
Sbjct: 63 T 63
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = +2
Query: 554 AQRXFSNHKEHFTKLAVDAVLRLKXSGNXKAIQIIQISGGXLEE 685
+ + S KE+F LAVDAVLRLK S N +AIQI++ +GG L++
Sbjct: 138 SSKILSQDKEYFAGLAVDAVLRLKGSTNLEAIQILKKTGGSLKD 181
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 64.9 bits (151), Expect = 6e-11
Identities = 27/62 (43%), Positives = 44/62 (70%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
L+ + V++PAAK+LV+++++QD EVGDGTTSV + L+ K+HP +II+G+
Sbjct: 19 LRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIIAAELLKRGNDLVRNKIHPTSIISGY 78
Query: 436 RI 441
R+
Sbjct: 79 RL 80
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 60.9 bits (141), Expect = 9e-10
Identities = 36/104 (34%), Positives = 57/104 (54%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
++ + + +PAAKILVD++K QD EVGDGTT+V + IE +HP ++I +
Sbjct: 69 MRLLDIIHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPYIEDGVHPHSLIRSY 128
Query: 436 RIASDAAKQALAEASFDHQKNLNEVH*EWI*KTSHGTTLSSKXL 567
R A A + + + + + E E + K + TTLSSK +
Sbjct: 129 RTAGHLAIEKVKDLATSIEGKSLEEKKELLAKCA-ATTLSSKLI 171
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +2
Query: 119 MSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAT 253
+S+ + D V++TLGP+GMDK++ + G ++NDGAT
Sbjct: 26 VSNINACTVVADTVRTTLGPRGMDKLIHD---DKGGTTISNDGAT 67
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 60.5 bits (140), Expect = 1e-09
Identities = 39/102 (38%), Positives = 56/102 (54%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
L+ + VDN AK++V++S QD E+GDGTT V V KL+E+ +HP I G+
Sbjct: 74 LEQMDVDNQIAKLMVELSCSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGY 133
Query: 436 RIASDAAKQALAEASFDHQKNLNEVH*EWI*KTSHGTTLSSK 561
+AS A L S H+ + + E + +T TTLSSK
Sbjct: 134 ELASRIAFDHLEHIS--HKFEFSATNIEPLVQTCM-TTLSSK 172
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = +2
Query: 143 AIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAT 253
A+ +++++LGPKGMDK+L S G V +TNDGAT
Sbjct: 39 AVARILRTSLGPKGMDKMLQS---PDGDVTITNDGAT 72
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 54.4 bits (125), Expect = 8e-08
Identities = 27/71 (38%), Positives = 39/71 (54%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
L+ + + +PAAK ++++S+ QDEEVGDGTTSV V I++ HP I +
Sbjct: 67 LRELDLAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAQAFIDKNYHPTVICRAY 126
Query: 436 RIASDAAKQAL 468
A D A L
Sbjct: 127 TKALDDALSVL 137
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +2
Query: 65 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTND 244
P+ +LK+ ++ A A+ D++++TLGP+ M K+L+ +G + VTND
Sbjct: 6 PVLVLKDSLKRESGTKVHHANIQAAKAVADIIRTTLGPQSMLKMLLDA---AGGIVVTND 62
Query: 245 G 247
G
Sbjct: 63 G 63
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/71 (38%), Positives = 39/71 (54%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
L+ I + +PAAK ++++S+ QDEEVGDGTTSV V I++ HP I +
Sbjct: 67 LREIDIAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFIDKHYHPTVICRAY 126
Query: 436 RIASDAAKQAL 468
A + A L
Sbjct: 127 TKALEDALAVL 137
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +2
Query: 53 VSLN-PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQV 229
++LN P+ +LK+ ++ A A+ D++++TLGP+ M K+L+ SG +
Sbjct: 1 MALNAPVLVLKDSLKRESGTKVHHANIQAAKAVADIIRTTLGPRSMLKMLLDA---SGGI 57
Query: 230 EVTNDG 247
VTNDG
Sbjct: 58 VVTNDG 63
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/83 (30%), Positives = 38/83 (45%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
+ + V +PAAKILV + Q EE+GDG +LI LHP II G+
Sbjct: 68 VNELEVQHPAAKILVLAGRAQQEEIGDGANLTISFAGELLEKAEELIRMGLHPSEIIIGY 127
Query: 436 RIASDAAKQALAEASFDHQKNLN 504
A + + L + +N++
Sbjct: 128 TKAINKTVEILEDLVEKGSENMD 150
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
LK + + NP A ++ + QD+ GDGTTS + + I++ HP+ ++ G+
Sbjct: 63 LKEMQIQNPTAIMIARTAVAQDDTSGDGTTSTVLFIGELMKQSERCIDEGTHPRFLVDGF 122
Query: 436 RIASDAAKQAL 468
+A A + L
Sbjct: 123 DVAKRATLEFL 133
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/39 (51%), Positives = 29/39 (74%)
Frame = +2
Query: 137 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAT 253
A A+ D V+++LGP+GMDK ++S G +V +TNDGAT
Sbjct: 35 ARAVADAVRTSLGPRGMDK-MISSGEQ--EVIITNDGAT 70
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHP 414
L + + PAA++L ++S+ QD GDGTT+V V L+ HP
Sbjct: 72 LSRMSLLQPAARMLAELSRSQDAAAGDGTTTVVVLAGSLLRRAQSLLSAGAHP 124
>10_08_0620 - 19321612-19323237
Length = 541
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 280 PAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHP 414
PAA++L D+S+ QD GDGTT+V V L+ HP
Sbjct: 84 PAARMLADLSRSQDAAAGDGTTTVVVLAGSLLRRAQSLLSAGAHP 128
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +2
Query: 143 AIGDLVKSTLGPKGMDKILVSCGRNSGQ-VEVTNDGAT 253
A+ +++LGP+GMDK++ S Q V +TNDGAT
Sbjct: 37 AVAAAARTSLGPRGMDKMISSSSSGGDQAVIITNDGAT 74
>02_01_0024 +
159595-159801,159892-160017,160201-160338,160431-160526,
160958-161200,161249-161537,161612-161781,161975-162052,
162156-162227,162345-162449,162555-162647,162737-162829,
163109-163235,163317-163330
Length = 616
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +2
Query: 134 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAT 253
G + DLV TLGPKG + +L S G ++ NDG T
Sbjct: 71 GVNKLADLVGVTLGPKGRNVVLES---KYGSPKIVNDGVT 107
>06_01_0097 -
810283-810296,810398-810521,810974-811066,811144-811236,
811410-811514,811661-811732,811857-811934,812210-812379,
812507-812741,812832-813074,813243-813338,813445-813582,
814014-814139,814235-814453
Length = 601
Score = 31.1 bits (67), Expect = 0.85
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 134 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAT 253
G + DLV TLGPKG + +L S G + NDG T
Sbjct: 75 GVNKLADLVGVTLGPKGRNVVLES---KYGSPRIVNDGVT 111
>03_01_0305 -
2383187-2383298,2383606-2383684,2383762-2383867,
2383941-2384044,2384141-2384240,2384533-2384628,
2384724-2384801,2385355-2385423,2385511-2385591,
2385670-2385759,2385859-2385945,2386022-2386126,
2386591-2386686,2386796-2386971,2387225-2387384,
2387898-2388029,2388236-2388260,2389023-2389174
Length = 615
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 134 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAT 253
G + D VK T+GPKG ++ ++ G +VT DG T
Sbjct: 88 GVEELADAVKVTMGPKGRTVVI---EQSFGAPKVTKDGVT 124
>05_06_0240 -
26629218-26629323,26629412-26629490,26629656-26629761,
26629844-26629947,26630069-26630168,26630256-26630351,
26630464-26630541,26630603-26630671,26630766-26630846,
26630879-26630935,26631016-26631105,26631192-26631278,
26631690-26631794,26631899-26631994,26632222-26632397,
26632847-26633006,26633151-26633600
Length = 679
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 134 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAT 253
G + D VK T+GPKG + I+ R+ +VT DG T
Sbjct: 135 GVNDLADAVKVTMGPKGRNVII---ERSHRAPKVTKDGVT 171
>03_01_0281 + 2160480-2162003
Length = 507
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 212 SRRKLRSYPFLWDLKYSLPNLLWQ*HR-*NWTSEQLQLSPLLLHF*G 75
S+RK + P W L LP+LL HR +W + L S L F G
Sbjct: 26 SKRKNTAIPVCWPLIGMLPDLLANRHRIHDWITSLLTASQLNFRFTG 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,991,954
Number of Sequences: 37544
Number of extensions: 253736
Number of successful extensions: 420
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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