Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060521.seq
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 107 1e-23
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 78 6e-15
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 6e-11
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 52 6e-07
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 47 2e-05
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 43 2e-04
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 30 2.0
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 107 bits (256), Expect = 1e-23
Identities = 57/115 (49%), Positives = 76/115 (66%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
LKSIG+DNPAAKILV++SKVQD+EVGDGTTSVTV KL+ K+HPQTI+AGW
Sbjct: 68 LKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGW 127
Query: 436 RIASDAAKQALAEASFDHQKNLNEVH*EWI*KTSHGTTLSSKXLFXSQGAFHQIS 600
R + AA++AL A+ DH + + + + TTLSSK L + F +++
Sbjct: 128 RKSVKAAEKALEAAAVDHSSDPEKFREDLM--NIARTTLSSKILVQHRDHFAKLA 180
Score = 87.0 bits (206), Expect = 1e-17
Identities = 44/67 (65%), Positives = 50/67 (74%)
Frame = +2
Query: 53 VSLNPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVE 232
VSLNP+ IL R+SSF+GAIAIGDLVKSTLGPKGMDKIL S G+N G ++
Sbjct: 1 VSLNPVSILNQGAEEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQN-GNIQ 59
Query: 233 VTNDGAT 253
VTNDGAT
Sbjct: 60 VTNDGAT 66
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +2
Query: 575 HKEHFTKLAVDAVLRLKXSGNXKAIQIIQISGGXL 679
H++HF KLAVDAVLRLK SG+ AIQII+ GG +
Sbjct: 172 HRDHFAKLAVDAVLRLKGSGDLNAIQIIKKLGGGM 206
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 78.2 bits (184), Expect = 6e-15
Identities = 43/99 (43%), Positives = 60/99 (60%)
Frame = +1
Query: 304 MSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASF 483
+SKVQD+EVGDGTTSVTV KL+ K+HPQTI+AGWR + AA++AL A+
Sbjct: 2 LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAV 61
Query: 484 DHQKNLNEVH*EWI*KTSHGTTLSSKXLFXSQGAFHQIS 600
DH + + + + TTLSSK L + F +++
Sbjct: 62 DHSSDPEKFRDDLM--NIARTTLSSKILVQHRDHFAKLA 98
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +2
Query: 575 HKEHFTKLAVDAVLRLKXSGNXKAIQIIQISGGXL 679
H++HF KLAVDAVLRLK SG+ AIQII+ GG +
Sbjct: 90 HRDHFAKLAVDAVLRLKGSGDLNAIQIIKKLGGGM 124
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/65 (46%), Positives = 43/65 (66%)
Frame = +1
Query: 256 LKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 435
L+ I V +PAAK ++++S+ QDEEVGDGTTSV + +EQ++HP IIA +
Sbjct: 9 LREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAY 68
Query: 436 RIASD 450
R+A D
Sbjct: 69 RLAMD 73
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 64.9 bits (151), Expect = 6e-11
Identities = 32/76 (42%), Positives = 46/76 (60%)
Frame = +1
Query: 223 SGRSNK*WCYELKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQ 402
SGR + + I V +PAAK ++++S+ QDEEVGDGTTSV + +EQ
Sbjct: 195 SGRKVQLGNVQAAKIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQ 254
Query: 403 KLHPQTIIAGWRIASD 450
++HP IIA +R+A D
Sbjct: 255 QMHPTQIIAAYRLAMD 270
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/62 (38%), Positives = 37/62 (59%)
Frame = +1
Query: 271 VDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASD 450
VD+ AK++V++SK QD E+GDGTT V V +L++ +HP I G+ +A+
Sbjct: 81 VDHQIAKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAK 140
Query: 451 AA 456
A
Sbjct: 141 IA 142
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = +2
Query: 116 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAT 253
+ S + A A+ ++K++LGPKGMDK++VS G+V VTNDGAT
Sbjct: 32 KQSHILAARAVASILKTSLGPKGMDKMMVS---PDGEVTVTNDGAT 74
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/46 (45%), Positives = 32/46 (69%)
Frame = +2
Query: 116 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAT 253
RM++ A A+ D ++++LGPKGMDK++ +G V +TNDGAT
Sbjct: 26 RMTNITAAKAVADAIRTSLGPKGMDKMIQG---GNGDVTITNDGAT 68
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/40 (55%), Positives = 30/40 (75%)
Frame = +2
Query: 146 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATN*NL 265
I D V++TLGP+GMDK++V GR G+ ++NDGAT NL
Sbjct: 667 IADAVRTTLGPRGMDKLIVD-GR--GKATISNDGATIINL 703
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +1
Query: 271 VDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASD 450
+ +P A ++ ++ QD+ GDGTTS + + + LHP+ + G+ +A
Sbjct: 171 IQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKK 230
Query: 451 AAKQALAEASFDHQ 492
A + L E +
Sbjct: 231 KALEVLEEVKVSRE 244
>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 554 AQRXFSNHKEHFTKLAVDAVLRLKXSGNXKAIQIIQISGGXLEE 685
+ + + KE F K+ VDAV+ L I + ++SGG LE+
Sbjct: 33 SSKLIATQKEFFAKMVVDAVMMLDELLPLDMIGMKKVSGGALED 76
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 277 NPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTI 423
N A+++ D++ +EE GDGTT+ TV + + +PQ +
Sbjct: 124 NIGARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVSKGANPQEV 172
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 116 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGAT 253
R + G + D V TLGPKG + I+ ++ G ++T DG T
Sbjct: 69 RAAMLQGVDTLADAVAVTLGPKGKNVII---EQSFGGPKITKDGVT 111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,048,776
Number of Sequences: 59808
Number of extensions: 278862
Number of successful extensions: 482
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -