Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060519.seq
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0387 - 20834510-20834978,20836866-20837329,20837458-20837634     30   2.0  
02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583...    28   6.0  

>05_04_0387 - 20834510-20834978,20836866-20837329,20837458-20837634
          Length = 369

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 363 KQDIKPPRDVKKXNGIDSYNPSTSSRELNPYWKDG 467
           K+++K  RDV   NG+ S    T +  + P WK G
Sbjct: 200 KKEVKYTRDVVAKNGLVSKKEETKTIRVKPGWKKG 234


>02_01_0783 +
           5835517-5835861,5835989-5836060,5836140-5836220,
           5836293-5836490,5836576-5836647,5836803-5836889,
           5836986-5837084,5837191-5837274,5837351-5837437,
           5837578-5837649,5837912-5838025,5838127-5838214,
           5838293-5838388,5838507-5838694
          Length = 560

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 378 PPRDVKKXNGIDSYNPSTSSRELNPYWKDGGSXLP 482
           P  D  K N I    P T + EL P W+DG +  P
Sbjct: 333 PNFDQMKGNKICKQIPWTENEELFPAWRDGRTGYP 367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,146,673
Number of Sequences: 37544
Number of extensions: 175426
Number of successful extensions: 357
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)