Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060519.seq
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)           29   4.6  
SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)                   28   6.1  

>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
          Length = 3015

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 287  FQPIALNQNLKTX*VNNMCFFFTLKLFRLMRFILVLFLFHFEHD 156
            FQ   + Q  +   ++   FF T+KL RL+RF   + +F F  D
Sbjct: 2442 FQKAVMIQEAENIALSFTVFFATMKLLRLIRFNPHIIIFSFSLD 2485


>SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)
          Length = 1054

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/75 (25%), Positives = 31/75 (41%)
 Frame = +3

Query: 285 KKKVQYVXKETREDWMAMTGLLKTYSKQDIKPPRDVKKXNGIDSYNPSTSSRELNPYWKD 464
           K K+       +E W  +  LL   S Q  +   ++K  NG   Y P   +   N Y+ +
Sbjct: 574 KNKIAQEHDNPKEAWKIINDLLGRSSDQ--RTVNEIK-INGASVYAPDEIAENFNQYFSN 630

Query: 465 GGSXLPQTPESFRKA 509
            G  L  + +S  K+
Sbjct: 631 IGQNLAASIDSLSKS 645


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,532,487
Number of Sequences: 59808
Number of extensions: 215945
Number of successful extensions: 518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)