Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060519.seq
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    28   7.1  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    28   7.1  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      28   7.1  

>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 341 CHCHPVFSSFFXHVL 297
           CHCHP F+  F H L
Sbjct: 837 CHCHPGFTGEFCHAL 851


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 341 CHCHPVFSSFFXHVL 297
           CHCHP F+  F H L
Sbjct: 837 CHCHPGFTGEFCHAL 851


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 341 CHCHPVFSSFFXHVL 297
           CHCHP F+  F H L
Sbjct: 837 CHCHPGFTGEFCHAL 851


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 341 CHCHPVFSSFFXHVL 297
           CHCHP F+  F H L
Sbjct: 837 CHCHPGFTGEFCHAL 851


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,102,109
Number of Sequences: 27780
Number of extensions: 171829
Number of successful extensions: 376
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)