Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060519.seq
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65687.1 68418.m08267 transporter-related low similarity to s...    30   1.6  
At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam ...    29   2.8  
At3g63030.1 68416.m07080 methyl-CpG-binding domain-containing pr...    29   3.8  
At4g20430.1 68417.m02981 subtilase family protein contains Pfam ...    28   6.6  
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi...    27   8.7  

>At5g65687.1 68418.m08267 transporter-related low similarity to
           spinster membrane proteins from [Drosophila
           melanogaster] GI:12003976,  GI:12003972, GI:12003974,
           GI:12003970; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 492

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 372 IKPPRDVKKXNGIDSYNPSTSSRELNPYWKDGGSXLPQTPESFRKADLSSXHLKKMTTIH 551
           IKPP+ +K     DS  PSTS   + P   +      +TP+S     L    LK + +  
Sbjct: 219 IKPPQQLKGFADKDSKKPSTSIETVAPTDAEASQIKTKTPKSKNLVVLFGKDLKALFSEK 278

Query: 552 -YLLEVXNLIT 581
            +++ V   IT
Sbjct: 279 VFIVNVLGYIT 289


>At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam
           profiles PF04677: Protein similar to CwfJ N terminus 1,
           PF04676: Protein similar to CwfJ N terminus 2
          Length = 692

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 330 MAMTGLLKTYSKQDIKPPRDVK-KXNGIDSYNPSTSSRELNPYWKDGGSXLPQTPESFRK 506
           M +  +L    K D  P  DV+ K           + RELNPY K+ G+  P+  ES +K
Sbjct: 78  MGLDWMLPPTRKADPNPASDVEDKFEESAPEVTKVNPRELNPYLKENGTGYPE-EESEKK 136


>At3g63030.1 68416.m07080 methyl-CpG-binding domain-containing
           protein contains Pfam profile PF01429: Methyl-CpG
           binding domain
          Length = 186

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/61 (21%), Positives = 29/61 (47%)
 Frame = +3

Query: 372 IKPPRDVKKXNGIDSYNPSTSSRELNPYWKDGGSXLPQTPESFRKADLSSXHLKKMTTIH 551
           ++ P + +K  G+    P+    + +  W      LP+TP+ F+++ +      KM T +
Sbjct: 55  LEDPFNCQKKQGMSCEEPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYY 114

Query: 552 Y 554
           +
Sbjct: 115 F 115


>At4g20430.1 68417.m02981 subtilase family protein contains Pfam
           profile: PF00082 subtilase family
          Length = 856

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = +3

Query: 366 QDIKPPRDVKKXNGIDSYN-PSTSSRELNP--YWKDGGSXLPQTPESFRKADLSSXHLKK 536
           +++K  RD  K      +  P    R ++   YW+   S + Q  +S  +  L      K
Sbjct: 59  EEVKRVRDQSKHGDTSKFTRPKLQPRNISRSRYWRSRRSAIAQAHDSLLRNALKGEKYIK 118

Query: 537 MTTIHYLL 560
           + + HYL+
Sbjct: 119 LYSFHYLI 126


>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 579

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 551 LSSRGXKSDYHXLKAX*EPXAHQKPXPDTYIRTEGQAN 664
           LS+    +DYH       P  HQ+P P     ++ Q N
Sbjct: 49  LSTSAAANDYHQNPQSGSPSQHQRPYPPQSFDSQNQTN 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,382,646
Number of Sequences: 28952
Number of extensions: 158076
Number of successful extensions: 311
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)