Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060518.seq
         (684 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55CFD Cluster: PREDICTED: similar to CG9213-PA;...    52   2e-05
UniRef50_Q9VXT5 Cluster: CG9213-PA; n=2; Sophophora|Rep: CG9213-...    50   7e-05
UniRef50_Q7PFI1 Cluster: ENSANGP00000024116; n=3; Culicidae|Rep:...    49   9e-05
UniRef50_UPI0000DB7E40 Cluster: PREDICTED: similar to CG9213-PA;...    43   0.008
UniRef50_UPI0000E486F4 Cluster: PREDICTED: similar to CWF19-like...    37   0.53 
UniRef50_Q2TBE0 Cluster: CWF19-like protein 2; n=31; Eumetazoa|R...    36   0.70 
UniRef50_Q14241 Cluster: Transcription elongation factor B polyp...    36   0.92 
UniRef50_A5DRR3 Cluster: Putative uncharacterized protein; n=1; ...    35   2.1  
UniRef50_Q28C44 Cluster: CWF19-like 2, cell cycle control; n=2; ...    34   2.8  
UniRef50_A5DBS7 Cluster: Putative uncharacterized protein; n=1; ...    33   4.9  
UniRef50_UPI000065F5D9 Cluster: CWF19-like 2, cell cycle control...    33   6.5  
UniRef50_Q22HL1 Cluster: DNA polymerase family B containing prot...    33   8.6  

>UniRef50_UPI0000D55CFD Cluster: PREDICTED: similar to CG9213-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG9213-PA - Tribolium castaneum
          Length = 549

 Score = 51.6 bits (118), Expect = 2e-05
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 15/89 (16%)
 Frame = +3

Query: 258 SNSDSEQWVEKES-SIVQKETX------------EDWMAMTGILKTYXKQDIKRPRDVXK 398
           S+S S++WVEK+  S  + ET             E+WM++     T    D +R R+  K
Sbjct: 25  SDSSSDEWVEKDKYSSSEDETSKNKPKEKSSTDREEWMSLPSSFLTESHLDRRRNREENK 84

Query: 399 K--NGIDSYNTSTSSRELNPXWKDGGSGL 479
           +     + YN  + SRELNP WKDGG GL
Sbjct: 85  RWEREREQYNPRSHSRELNPYWKDGGDGL 113


>UniRef50_Q9VXT5 Cluster: CG9213-PA; n=2; Sophophora|Rep: CG9213-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 687

 Score = 49.6 bits (113), Expect = 7e-05
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
 Frame = +3

Query: 252 KSSNSDSEQWVEKE-----SSIVQKETXE--DWMAMTGIL-KTYXKQDIKRPRDVXKKNG 407
           +  ++  ++WVE        ++ +KE  +  DWM    +L KT+ ++  +  +   K   
Sbjct: 125 RKESASEDEWVEAPPPLAADNVTKKEPPQRDDWMTSESLLLKTFSRERKEPAKPNEKAQQ 184

Query: 408 IDSYNTSTSSRELNPXWKDGGSGL 479
           ID+Y+ + S RELNP WK  G+GL
Sbjct: 185 IDAYDPAKSGRELNPYWKSNGTGL 208


>UniRef50_Q7PFI1 Cluster: ENSANGP00000024116; n=3; Culicidae|Rep:
           ENSANGP00000024116 - Anopheles gambiae str. PEST
          Length = 594

 Score = 49.2 bits (112), Expect = 9e-05
 Identities = 38/98 (38%), Positives = 49/98 (50%), Gaps = 14/98 (14%)
 Frame = +3

Query: 255 SSNSDSEQWVE---------KESSIVQKETXEDWMAMTGILKTYXKQDIKRPRDVXKKNG 407
           S+ S+S+QWVE            S   K   EDWM    ++ TY ++    P+   KKN 
Sbjct: 49  SAESESDQWVEALPVTTNVHSRQSPEAKLEREDWMNSM-LIPTYSRE----PKKEDKKNS 103

Query: 408 IDS-----YNTSTSSRELNPXWKDGGSGLLQTPESFRK 506
             +     Y+  TS RELNP WK+GGSGL     SFRK
Sbjct: 104 TPADQQQQYDPKTSVRELNPYWKNGGSGL----PSFRK 137


>UniRef50_UPI0000DB7E40 Cluster: PREDICTED: similar to CG9213-PA;
           n=1; Apis mellifera|Rep: PREDICTED: similar to CG9213-PA
           - Apis mellifera
          Length = 596

 Score = 42.7 bits (96), Expect = 0.008
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 321 EDWMAMTGILKTYXKQDIKRPRDVXKK-NGIDSYNTSTSSRELNPXWKDGGSGLLQTPES 497
           EDWM +  IL     +  K   +  K  +  D    + + +ELNP WK+GG+GL +   +
Sbjct: 71  EDWMNIKSILPCVFNEKKKEFSNSDKNIDKSDMNKLNQNKKELNPYWKNGGNGLPEKNST 130

Query: 498 FRKAEISSNHLKK 536
             + +I  N LKK
Sbjct: 131 NAQPKIDINWLKK 143


>UniRef50_UPI0000E486F4 Cluster: PREDICTED: similar to CWF19-like 2,
           cell cycle control (S. pombe); n=3; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to CWF19-like 2, cell
           cycle control (S. pombe) - Strongylocentrotus purpuratus
          Length = 730

 Score = 36.7 bits (81), Expect = 0.53
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = +3

Query: 333 AMTGILKTYXKQDIKRPRDVXKKNGIDSYNTSTSSRELNPXWKDGGSGLLQTPESFR 503
           A T +     K++ ++ ++  K   +   +   S+RELNP WK+GG+GL +  E+ R
Sbjct: 20  AATSVADIRKKKNAEKEKEREKTKNLA--DADYSARELNPYWKEGGTGLPEDEETSR 74


>UniRef50_Q2TBE0 Cluster: CWF19-like protein 2; n=31; Eumetazoa|Rep:
           CWF19-like protein 2 - Homo sapiens (Human)
          Length = 740

 Score = 36.3 bits (80), Expect = 0.70
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 324 DWMAMTGILKTYXKQDIKRPRDVXKKNGIDSYNTSTSSRELNPXWKDGGSGL 479
           D+M++  +  +  K + +  R + ++       +    RELNP WKDGG+GL
Sbjct: 4   DFMSVKTVSSSSLKAEKETMRKIEQEKNQALEQSKLMERELNPYWKDGGTGL 55


>UniRef50_Q14241 Cluster: Transcription elongation factor B
           polypeptide 3; n=23; Euteleostomi|Rep: Transcription
           elongation factor B polypeptide 3 - Homo sapiens (Human)
          Length = 772

 Score = 35.9 bits (79), Expect = 0.92
 Identities = 23/85 (27%), Positives = 39/85 (45%)
 Frame = +3

Query: 294 SSIVQKETXEDWMAMTGILKTYXKQDIKRPRDVXKKNGIDSYNTSTSSRELNPXWKDGGS 473
           SS+ +K       A    LK    +D ++ +    K G+DS++T   + +L P  K+ GS
Sbjct: 307 SSLKKKCLPPSEAASDNHLKKPKHRDPEKAKLDKSKQGLDSFDTGKGAGDLLPKVKEKGS 366

Query: 474 GLLQTPESFRKAEISSNHLKKMTTI 548
             L+TPE   K  +    L  +  +
Sbjct: 367 NNLKTPEGKVKTNLDRKSLGSLPKV 391


>UniRef50_A5DRR3 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 668

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 24/99 (24%), Positives = 45/99 (45%)
 Frame = +3

Query: 249 IKSSNSDSEQWVEKESSIVQKETXEDWMAMTGILKTYXKQDIKRPRDVXKKNGIDSYNTS 428
           + SSN+D +   E+E+      + +  M ++    +     +K+  +  KKN   S NTS
Sbjct: 45  VLSSNTDDDAGFEEEADDTFNSSMDTSMEVSNFRNSNLTMAVKKITNSQKKNSSKSNNTS 104

Query: 429 TSSRELNPXWKDGGSGLLQTPESFRKAEISSNHLKKMTT 545
            ++   N  + +  S L +      K E+ S  LK+ +T
Sbjct: 105 NNNNNNNNNFSNNNSILNENEFLLNKREVPS--LKRSST 141


>UniRef50_Q28C44 Cluster: CWF19-like 2, cell cycle control; n=2;
           Xenopus tropicalis|Rep: CWF19-like 2, cell cycle control
           - Xenopus tropicalis (Western clawed frog) (Silurana
           tropicalis)
          Length = 922

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +3

Query: 435 SRELNPXWKDGGSGL 479
           SRELNP WKDGG+GL
Sbjct: 191 SRELNPYWKDGGTGL 205


>UniRef50_A5DBS7 Cluster: Putative uncharacterized protein; n=1;
            Pichia guilliermondii|Rep: Putative uncharacterized
            protein - Pichia guilliermondii (Yeast) (Candida
            guilliermondii)
          Length = 1212

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 396  KKNGIDSYNTSTSSRELNPXWKDGGSGLLQTPESFRKAEISSNHLKKMTT 545
            +K    + N S +   +N  +K+    L+QT    RK +  SNHLKK  T
Sbjct: 1094 RKTAQANNNRSVNLSAINDTFKEQEQSLIQTAHEARKYDYLSNHLKKTNT 1143


>UniRef50_UPI000065F5D9 Cluster: CWF19-like 2, cell cycle control;
           n=1; Takifugu rubripes|Rep: CWF19-like 2, cell cycle
           control - Takifugu rubripes
          Length = 664

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 324 DWMAMTGILKTYXKQDIKRPRDVXKKNGIDSYNTSTSSRELNPXWKDGGSGL 479
           D++AM        + + +R ++V +              ELNP WKDGG+GL
Sbjct: 4   DFLAMKTTSTMERRAEKERLKEVERAKAQTIEQAGLHKLELNPYWKDGGTGL 55


>UniRef50_Q22HL1 Cluster: DNA polymerase family B containing
           protein; n=12; root|Rep: DNA polymerase family B
           containing protein - Tetrahymena thermophila SB210
          Length = 1124

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +2

Query: 446 QSLXERWWLRTTADTRKFSESRDFXKPSEEDDYYTLCYRGHKSDYXHSKQYEXRSTSKAE 625
           Q L  + + R   DT K +E  DF     + DYY +       D    KQ + + ++K E
Sbjct: 44  QDLSNKKYCRPPIDTTKINEQNDFYFMQLDADYYLVSNNKKDGDQGDDKQKQAQESNKKE 103


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 456,308,332
Number of Sequences: 1657284
Number of extensions: 6672561
Number of successful extensions: 18195
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18180
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)