Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060518.seq
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    24   1.0  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   5.4  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   7.1  
EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic hor...    21   9.4  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 449 SLXERWWLRTTADTRKFSESRDFXKPSEEDDYYTLCYRGHKSDY 580
           S   R+ LR+    RK   S       ++D Y  +CY  + S Y
Sbjct: 56  SSVNRFRLRSRPGHRKTDNSLSATSKKDKDGYKVVCYYTNWSQY 99


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 485 DTRKFSESRDFXKPSEEDDYYTL 553
           D  + S +  + KPS E DY+++
Sbjct: 146 DELRSSSAFSYIKPSSERDYFSV 168


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/32 (18%), Positives = 17/32 (53%)
 Frame = -2

Query: 140 WVXHLYIRIFKILLYALYNHYLINYLFTYVFY 45
           W+  + +R+F+  +   + +Y+ N     +F+
Sbjct: 135 WISSVGVRMFQYYIGRSFTYYVCNTTIFLIFH 166


>EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic
           hormone 1 protein.
          Length = 73

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 340 VIAIQSSXVSFCTIELSFST 281
           +I +  + V  CT +L+FST
Sbjct: 6   LIVVLIAFVGVCTAQLNFST 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,221
Number of Sequences: 336
Number of extensions: 1871
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)