Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060518.seq
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   2.5  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   2.5  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   4.4  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   7.7  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    25   7.7  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 113  FKILLYALYNHYLINYLFTYVF 48
            F +  Y +YN++  NYLF Y +
Sbjct: 1082 FTLFWYQIYNNFDANYLFDYTY 1103


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 442 NSILXGKMVAQDYCRHQKVFGKQRFXQTI*R 534
           NS +   ++ +DYC   + FG++   QT+ R
Sbjct: 43  NSYIYDYLIKKDYCEAARAFGREAQVQTLVR 73


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +3

Query: 279 WVEKESSIVQKETXEDWMAMTGILKTYXKQDIKRPRDVXKKNGIDSYNTSTSSRELNPXW 458
           ++E +SSI++K+       +T +     K  +KR  D   K+ +  Y  S+   E N  +
Sbjct: 321 YLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSALKDAL--YLKSSIVEETNDGY 378

Query: 459 KDGGSGLLQ 485
                 LLQ
Sbjct: 379 SQAPEQLLQ 387


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 249 IKSSNSDSEQWVEKESSIVQKETXEDWM 332
           I SSN + E +     S+ QK+T   W+
Sbjct: 285 IISSNREEESFYSVHDSVTQKKTRTSWL 312


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 432 SSRELNPX-WKDGGSGLLQTPESFRKAEISSNHLKKMTTIHYVIEV 566
           S  E++P  +K GG+    TPE+  + E   N  K ++T + ++++
Sbjct: 579 SKDEIHPRGYKCGGNERNLTPEATSEIEREKNESKDISTFNIILDL 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,421
Number of Sequences: 5004
Number of extensions: 31742
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)