Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060518.seq
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0387 - 20834510-20834978,20836866-20837329,20837458-20837634     34   0.12 
03_06_0195 + 32256771-32258792                                         30   1.5  
04_04_0808 - 28196563-28196735,28197369-28197440,28197540-281976...    29   4.5  
06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089     28   7.9  

>05_04_0387 - 20834510-20834978,20836866-20837329,20837458-20837634
          Length = 369

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 363 KQDIKRPRDVXKKNGIDSYNTSTSSRELNPXWKDG 467
           K+++K  RDV  KNG+ S    T +  + P WK G
Sbjct: 200 KKEVKYTRDVVAKNGLVSKKEETKTIRVKPGWKKG 234


>03_06_0195 + 32256771-32258792
          Length = 673

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 267 DSEQWVEKESSIVQKETXEDWMAMTGILKTYXKQDIKRPRDV--XKKNGIDS 416
           D+E + E+ES + Q +  E+W   TG+  +Y   D     ++   K + IDS
Sbjct: 318 DNESFGEEESCMEQSDAEEEWPEFTGVPVSYNDIDTDSDMEIDGGKYDDIDS 369


>04_04_0808 -
           28196563-28196735,28197369-28197440,28197540-28197666,
           28198362-28198430,28198517-28198583,28198751-28198872,
           28199302-28199412,28199596-28199661,28200156-28200213,
           28200307-28200343,28200420-28200513,28200967-28201032,
           28201139-28201203,28201352-28201496,28201925-28202074,
           28202266-28202335,28202752-28202828,28202919-28202987,
           28203798-28203881,28204018-28204061,28204172-28204273,
           28204420-28204618,28204672-28204727,28204886-28204958,
           28205685-28205771,28205863-28205976,28206985-28207092,
           28207183-28207278,28207722-28207787,28208130-28208222,
           28208429-28208512,28208961-28209078,28209191-28209267,
           28209459-28209641,28210542-28210636,28210903-28211053,
           28212218-28212325,28212513-28212612,28212788-28212840,
           28214022-28214102
          Length = 1269

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 366 QDIKRPRDVXKKNGIDSYNTSTSSRELNPXWKDGGSGLLQT 488
           Q +++  +    NGID Y TST   EL    KD   G L T
Sbjct: 110 QQVQQVNNTMTVNGIDYYVTSTYGEELYNSCKDVKFGTLNT 150


>06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089
          Length = 681

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 443 TQSLXERWWLRTTADTRKFSESRDFXKPSEEDDYYTLCYRGHK-SDYXHSK 592
           T+   ERW     + + +   +R+  K   E+D   +C R H   +Y H K
Sbjct: 224 TEETLERWKKEKLSKSERKRRAREAKKAEAEEDAAVVCARCHSLRNYGHVK 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,772,047
Number of Sequences: 37544
Number of extensions: 169299
Number of successful extensions: 400
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)