Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060518.seq
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15380| Best HMM Match : RA (HMM E-Value=0.11)                       29   2.7  
SB_529| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.1  
SB_53163| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
          Length = 2124

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/77 (23%), Positives = 28/77 (36%)
 Frame = +3

Query: 264  SDSEQWVEKESSIVQKETXEDWMAMTGILKTYXKQDIKRPRDVXKKNGIDSYNTSTSSRE 443
            SD E W EKE  + + E  E W    G +    K+  K       ++  + + T     +
Sbjct: 1138 SDKEGWKEKEGEVDESE-KEGWKEKEGEVDESEKEGWKEKEGEVDESEKEGWKTEGEGEK 1196

Query: 444  LNPXWKDGGSGLLQTPE 494
                WK    G  +  E
Sbjct: 1197 TEEEWKKEVEGQREEKE 1213


>SB_529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/56 (30%), Positives = 32/56 (57%)
 Frame = +3

Query: 387 DVXKKNGIDSYNTSTSSRELNPXWKDGGSGLLQTPESFRKAEISSNHLKKMTTIHY 554
           ++ K+NG+ S  T T+S++ N     G    ++T E+  +A  S +  KK+T +H+
Sbjct: 26  NIPKQNGVPS-KTKTASKDSN-----GSLNKIKTIENAIEAPDSRSRSKKLTILHF 75


>SB_53163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = +3

Query: 246 LIKSSNSDSEQWVEKESSIVQ------KETXEDWMAMTG 344
           L+++ +    QW E+E  + Q      +E   +WMAMTG
Sbjct: 128 LLEALSKKEAQWCEREEELKQEVKLSWREKYHEWMAMTG 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,369,444
Number of Sequences: 59808
Number of extensions: 209618
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)