Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060518.seq
         (684 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    25   2.9  
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    23   6.8  
AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    23   6.8  

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 477 LLQTPESFRKAEISSNHLKKMT 542
           L  T  S  K +I+ NHLKK+T
Sbjct: 383 LYATSSSQSKRDIAKNHLKKVT 404


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 521 KPSEEDDYYTLCYRGHKS 574
           K S ++DYY   YRG K+
Sbjct: 117 KLSPKEDYYRKLYRGEKT 134


>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 287 KRKFNSAKRNXRRLDGNDRYIENILKTGH*ATKRCTKKEW 406
           +RKF S  R    ++   RY+E  +K        C+  +W
Sbjct: 48  QRKFVSEVRRCDEMERKLRYVEGEVKKDSVQIPECSVDDW 87


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 500,679
Number of Sequences: 2352
Number of extensions: 7359
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)