Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060518.seq
         (684 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC118669-1|AAI18670.1|  740|Homo sapiens CWF19-like 2, cell cycl...    36   0.10 
BC110442-1|AAI10443.2|  740|Homo sapiens CWF19-like 2, cell cycl...    36   0.10 
BC110441-1|AAI10442.1|  518|Homo sapiens CWF19L2 protein protein.      36   0.10 
BC110440-1|AAI10441.1|  603|Homo sapiens CWF19L2 protein protein.      36   0.10 
BC110439-1|AAI10440.1|  588|Homo sapiens CWF19L2 protein protein.      36   0.10 
AK056905-1|BAB71307.1|  740|Homo sapiens protein ( Homo sapiens ...    36   0.10 
L47345-1|AAA75492.1|  772|Homo sapiens elongin A protein.              36   0.13 
BC002883-1|AAH02883.1|  772|Homo sapiens transcription elongatio...    36   0.13 
AL031295-2|CAB40157.1|  772|Homo sapiens transcription elongatio...    36   0.13 

>BC118669-1|AAI18670.1|  740|Homo sapiens CWF19-like 2, cell cycle
           control (S. pombe) protein.
          Length = 740

 Score = 36.3 bits (80), Expect = 0.10
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 324 DWMAMTGILKTYXKQDIKRPRDVXKKNGIDSYNTSTSSRELNPXWKDGGSGL 479
           D+M++  +  +  K + +  R + ++       +    RELNP WKDGG+GL
Sbjct: 4   DFMSVKTVSSSSLKAEKETMRKIEQEKNQALEQSKLMERELNPYWKDGGTGL 55


>BC110442-1|AAI10443.2|  740|Homo sapiens CWF19-like 2, cell cycle
           control (S. pombe) protein.
          Length = 740

 Score = 36.3 bits (80), Expect = 0.10
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 324 DWMAMTGILKTYXKQDIKRPRDVXKKNGIDSYNTSTSSRELNPXWKDGGSGL 479
           D+M++  +  +  K + +  R + ++       +    RELNP WKDGG+GL
Sbjct: 4   DFMSVKTVSSSSLKAEKETMRKIEQEKNQALEQSKLMERELNPYWKDGGTGL 55


>BC110441-1|AAI10442.1|  518|Homo sapiens CWF19L2 protein protein.
          Length = 518

 Score = 36.3 bits (80), Expect = 0.10
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 324 DWMAMTGILKTYXKQDIKRPRDVXKKNGIDSYNTSTSSRELNPXWKDGGSGL 479
           D+M++  +  +  K + +  R + ++       +    RELNP WKDGG+GL
Sbjct: 4   DFMSVKTVSSSSLKAEKETMRKIEQEKNQALEQSKLMERELNPYWKDGGTGL 55


>BC110440-1|AAI10441.1|  603|Homo sapiens CWF19L2 protein protein.
          Length = 603

 Score = 36.3 bits (80), Expect = 0.10
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 324 DWMAMTGILKTYXKQDIKRPRDVXKKNGIDSYNTSTSSRELNPXWKDGGSGL 479
           D+M++  +  +  K + +  R + ++       +    RELNP WKDGG+GL
Sbjct: 4   DFMSVKTVSSSSLKAEKETMRKIEQEKNQALEQSKLMERELNPYWKDGGTGL 55


>BC110439-1|AAI10440.1|  588|Homo sapiens CWF19L2 protein protein.
          Length = 588

 Score = 36.3 bits (80), Expect = 0.10
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 324 DWMAMTGILKTYXKQDIKRPRDVXKKNGIDSYNTSTSSRELNPXWKDGGSGL 479
           D+M++  +  +  K + +  R + ++       +    RELNP WKDGG+GL
Sbjct: 4   DFMSVKTVSSSSLKAEKETMRKIEQEKNQALEQSKLMERELNPYWKDGGTGL 55


>AK056905-1|BAB71307.1|  740|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32343 fis, clone PROST2006260, weakly similar to
           SPLICING FACTOR, ARGININE/SERINE-RICH 4. ).
          Length = 740

 Score = 36.3 bits (80), Expect = 0.10
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 324 DWMAMTGILKTYXKQDIKRPRDVXKKNGIDSYNTSTSSRELNPXWKDGGSGL 479
           D+M++  +  +  K + +  R + ++       +    RELNP WKDGG+GL
Sbjct: 4   DFMSVKTVSSSSLKAEKETMRKIEQEKNQALEQSKLMERELNPYWKDGGTGL 55


>L47345-1|AAA75492.1|  772|Homo sapiens elongin A protein.
          Length = 772

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 23/85 (27%), Positives = 39/85 (45%)
 Frame = +3

Query: 294 SSIVQKETXEDWMAMTGILKTYXKQDIKRPRDVXKKNGIDSYNTSTSSRELNPXWKDGGS 473
           SS+ +K       A    LK    +D ++ +    K G+DS++T   + +L P  K+ GS
Sbjct: 307 SSLKKKCLPPSEAASDNHLKKPKHRDPEKAKLDKSKQGLDSFDTGKGAGDLLPKVKEKGS 366

Query: 474 GLLQTPESFRKAEISSNHLKKMTTI 548
             L+TPE   K  +    L  +  +
Sbjct: 367 NNLKTPEGKVKTNLDRKSLGSLPKV 391


>BC002883-1|AAH02883.1|  772|Homo sapiens transcription elongation
           factor B (SIII), polypeptide 3 (110kDa, elongin A)
           protein.
          Length = 772

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 23/85 (27%), Positives = 39/85 (45%)
 Frame = +3

Query: 294 SSIVQKETXEDWMAMTGILKTYXKQDIKRPRDVXKKNGIDSYNTSTSSRELNPXWKDGGS 473
           SS+ +K       A    LK    +D ++ +    K G+DS++T   + +L P  K+ GS
Sbjct: 307 SSLKKKCLPPSEAASDNHLKKPKHRDPEKAKLDKSKQGLDSFDTGKGAGDLLPKVKEKGS 366

Query: 474 GLLQTPESFRKAEISSNHLKKMTTI 548
             L+TPE   K  +    L  +  +
Sbjct: 367 NNLKTPEGKVKTNLDRKSLGSLPKV 391


>AL031295-2|CAB40157.1|  772|Homo sapiens transcription elongation
           factor B (SIII), polypeptide 3 (110kDa, elongin A)
           protein.
          Length = 772

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 23/85 (27%), Positives = 39/85 (45%)
 Frame = +3

Query: 294 SSIVQKETXEDWMAMTGILKTYXKQDIKRPRDVXKKNGIDSYNTSTSSRELNPXWKDGGS 473
           SS+ +K       A    LK    +D ++ +    K G+DS++T   + +L P  K+ GS
Sbjct: 307 SSLKKKCLPPSEAASDNHLKKPKHRDPEKAKLDKSKQGLDSFDTGKGAGDLLPKVKEKGS 366

Query: 474 GLLQTPESFRKAEISSNHLKKMTTI 548
             L+TPE   K  +    L  +  +
Sbjct: 367 NNLKTPEGKVKTNLDRKSLGSLPKV 391


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,294,899
Number of Sequences: 237096
Number of extensions: 980103
Number of successful extensions: 1956
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1956
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)