Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060518.seq
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical ...    29   3.1  
AC006744-2|AAF60505.2|  503|Caenorhabditis elegans Cytochrome p4...    27   9.4  

>AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical
           protein F14D2.7 protein.
          Length = 471

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 426 STSSRELNPXWKDGGSGLLQTPESFRKAEISSNHLKKMTTIH 551
           +TS R++   WK+  S   Q  + F+  E S++ L+KM T H
Sbjct: 203 ATSLRKMFYTWKEDNSICYQLAKIFQGVEDSADPLRKMLTNH 244


>AC006744-2|AAF60505.2|  503|Caenorhabditis elegans Cytochrome p450
           family protein 29A3 protein.
          Length = 503

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +3

Query: 225 KKSTYY*LIKS--SNSDSEQWVEKESSIVQKETXEDWMAMTGILKTYXKQDIKRPRDVXK 398
           KK  Y+ ++K+   N  +E+   +ES  V+KET +  M    IL +  +  +  P D+ +
Sbjct: 243 KKDEYFNIMKTFTRNVIAERRTARESGEVEKETSKRNMNFLDILLSNEESSVLSPEDLRQ 302

Query: 399 K 401
           +
Sbjct: 303 E 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,956,424
Number of Sequences: 27780
Number of extensions: 170647
Number of successful extensions: 602
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)