Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060518.seq
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam ...    30   1.6  
At3g27720.1 68416.m03461 zinc finger protein-related contains Pf...    29   2.9  
At2g44470.1 68415.m05529 glycosyl hydrolase family 1 protein con...    29   3.8  
At2g28210.1 68415.m03425 carbonic anhydrase family protein simil...    29   3.8  

>At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam
           profiles PF04677: Protein similar to CwfJ N terminus 1,
           PF04676: Protein similar to CwfJ N terminus 2
          Length = 692

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
 Frame = +3

Query: 171 ERXKAQE*IS*AERA*E*KKSTYY*LIKSSNSDSEQWVEKESSIVQKETXEDWMAMTGIL 350
           +R +  + ++  ER  E  K     + KS + ++      E  IV+K+   DWM     L
Sbjct: 30  DRRRKNKDVNRKERRGEGSKRDGKKIAKSGDGETVDDDLLEGDIVRKKMGLDWM-----L 84

Query: 351 KTYXKQDIKRPRDVXKKNGIDSYN-TSTSSRELNPXWKDGGSG 476
               K D     DV  K    +   T  + RELNP  K+ G+G
Sbjct: 85  PPTRKADPNPASDVEDKFEESAPEVTKVNPRELNPYLKENGTG 127


>At3g27720.1 68416.m03461 zinc finger protein-related contains
           Pfam:PF01485 IBR domain
          Length = 493

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 503 ESRDFXKPSEEDDYYTLCYRGHKSDYXHSKQ 595
           E  D   PSE DD+  +C    +SD  HS++
Sbjct: 10  EEEDNCYPSEFDDHDQMCSNAEESDLQHSRE 40


>At2g44470.1 68415.m05529 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to anther-specific protein ATA27 (GI:2746341)
           [Arabidopsis thaliana]
          Length = 451

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 357 YXKQDIKRPRDVXKKNGIDSYNTSTSSRE 443
           Y K     P    K+NGID Y+  T SRE
Sbjct: 399 YIKDKYNNPIVYVKENGIDHYDDGTKSRE 427


>At2g28210.1 68415.m03425 carbonic anhydrase family protein similar
           to storage protein (dioscorin) [Dioscorea cayenensis]
           GI:433463; contains Pfam profile PF00194:
           Eukaryotic-type carbonic anhydrase
          Length = 217

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 441 ELNPXWKDGGSGLLQTP-ESFRKAEISSNHLKKMTTIHY 554
           +L P WK  G G +Q+P +   K      HLKK+T  HY
Sbjct: 26  KLRPEWKMCGKGEMQSPIDLMNKRVRLVTHLKKLTR-HY 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,130,504
Number of Sequences: 28952
Number of extensions: 152932
Number of successful extensions: 419
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)