Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060517.seq
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   2.4  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   3.1  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    25   7.2  
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    25   7.2  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    25   7.2  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.5  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   9.5  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   9.5  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   9.5  

>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 265 SGSAEEKQNRPHG*DA*NSRSPSQSADIYRQTLRYPV 375
           S    EK+NRP    A  SRS S+++ +YRQT   P+
Sbjct: 351 SAPVREKRNRPAH-SAQISRSISKTSRMYRQTAEEPL 386


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +2

Query: 188 PTGTSEEGINNSIPWSTTSLRRSHRRQDQQRKSRTAPMGRMRKIHAVHPNLLTYTAKLFD 367
           P   + +  +NS P S   L+++H  Q       T P   +     V PN +  TA +  
Sbjct: 257 PPSHAMQNPHNSFPASADRLQKNHPVQSSNFNPYT-PAPSI----TVPPNYIPNTAMMGP 311

Query: 368 TRSSFDDQDER 400
           + SSF D D R
Sbjct: 312 SYSSFGDTDPR 322


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 41  DLEAALYFRLSPEMLGS 91
           D+ A  +F LSPEMLGS
Sbjct: 120 DVSAWAHFSLSPEMLGS 136


>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 494 GPTKKLVPLDIWDTGG 541
           GP  K++ L +WDT G
Sbjct: 58  GPNSKVIELALWDTAG 73


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 390 RTREWYGSTNKAVIRRSKRSVDHHTVSGRICGQQKVQQRSSCPSISG 530
           R ++ YG+   A +  +KRS+ +     ++ G+ KV Q  S P+I G
Sbjct: 57  RVKDNYGNIYAAKVI-AKRSLQNDKTKLKLFGEIKVHQSMSHPNIVG 102


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 482 WSAEGPTKKLVPLDIWD 532
           +S+    KK+VP+D+WD
Sbjct: 311 YSSSKNRKKIVPVDVWD 327


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +1

Query: 82  VRIPTSPG---IIPCHVCGPLEACSIPAGIVIPGSAATPN 192
           + +P  PG   ++P    G + A   PA   IPG+   PN
Sbjct: 277 MNVPMGPGGAPLVPPPPPGMVMASPSPAAATIPGAPVMPN 316


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 367 IEEFGGICQQIGMDCVNFTHPTHG 296
           ++E+ G     G D +N T PTHG
Sbjct: 132 VKEYKGTTFFDGFDFMNITDPTHG 155


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -2

Query: 186 GRSRPWYNNASRDAARLKRSAYVAWDNARRRRDPNISGERRKYNAASRS 40
           G   P +N  SR  A    S   AW++  R    N   +   +NA SR+
Sbjct: 824 GSRTPAWNTGSRTPAWNSGSKTPAWNSGSRTPAWNSGNKTPAWNAGSRT 872


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,119
Number of Sequences: 5004
Number of extensions: 70558
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)