Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060517.seq
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0069 + 890634-890941,892146-892395,893146-893175,894956-89... 30 1.4
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 30 1.9
06_01_0216 - 1641914-1642381,1642471-1642725 29 3.2
09_02_0384 - 8294914-8297817 28 5.6
03_05_0994 + 29541109-29542527 28 5.6
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 28 5.6
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 28 5.6
07_03_0104 + 13434954-13435145,13436220-13436288,13436386-134365... 28 7.5
05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887 28 7.5
01_05_0396 + 21742449-21742659,21742961-21742965 27 9.9
>10_01_0069 +
890634-890941,892146-892395,893146-893175,894956-895135,
895418-895669
Length = 339
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 195 PVGGRSRPWYNNASRDAARLKRSA 124
P+GG+ PW NNA D LK+ A
Sbjct: 224 PLGGKGTPWSNNAVMDCPLLKQIA 247
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +1
Query: 49 SGVIFPPFP*DVRIPTSPGIIPCHVCGPLEACSIPAG 159
SG FPP P PTSPG P + P+G
Sbjct: 75 SGDFFPPAPPTTTTPTSPGTTPSPTTVAADVSKTPSG 111
>06_01_0216 - 1641914-1642381,1642471-1642725
Length = 240
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -2
Query: 147 AARLKRSAYVAWDNARRRRDPNISGERRKYNAASRSYKKVIAKAKSARA 1
AAR K + V A+R+R P S K A+S KK + A+ ARA
Sbjct: 162 AARSKAAKGVV-GGAKRKRTPRPSAAAAKKPASSAEAKKAVPPARPARA 209
>09_02_0384 - 8294914-8297817
Length = 967
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 481 QIRPDTVWWSTLRLDRLITALFVLPYHSL 395
QIR + WW++LR D T +LP++ +
Sbjct: 885 QIRGEEQWWNSLRWDGDATRNMLLPFYKV 913
>03_05_0994 + 29541109-29542527
Length = 472
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 322 RSPSQSADIYRQTLRYPVVVRRSGRESGTAARIRQ*SDDPSGASTTTLYPAGSVVSRR-S 498
RS QSA + + + P V RR GR++ AA + + P VV+RR +
Sbjct: 122 RSSRQSAAVVGEQEKPPAVTRRGGRKNAAAAAVA--VEPPIAEKEEPEPEEAPVVTRRGA 179
Query: 499 NKEARAP 519
K+A P
Sbjct: 180 RKKAAQP 186
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -2
Query: 183 RSRPWYNNASRDAARLKRSAYVAWDNARRRRDPNISGERRKYNAASRSY 37
R RPW NN+S R + Y D R D G R+++ R Y
Sbjct: 1278 RPRPWSNNSSSYPERYR---YDGHDRDHHRHDRRHHGHDRRHHFDDRGY 1323
>01_05_0687 +
24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 618 PEPLTSRVGLPTISPWPTASPSW*HSPPVSQISRGTSFFVGPSAD 484
P PL LPT +P P SP H+ P+ S G + P A+
Sbjct: 27 PPPLQGDPSLPTDAPPPEPSPQPHHATPIPPPSPGQATEGWPRAE 71
>07_03_0104 +
13434954-13435145,13436220-13436288,13436386-13436523,
13436612-13436729,13437214-13437296,13438305-13438400,
13438552-13438720,13438798-13438940,13439027-13439113,
13439197-13439382,13439956-13440123,13441028-13441148,
13441453-13441522,13441694-13441781,13441866-13442018
Length = 626
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -3
Query: 461 VVVDAPLGSSDHCLIRAAVPLSRPDRRTTTGYRRVWRYMSADWDGLREFYASYPW 297
V++ P G+S + A+ PL R +R T W + G Y S+PW
Sbjct: 61 VLIKLPAGTSFYGTGEASGPLERTGKRVFTWNTDAWGF----GPGTTSLYQSHPW 111
>05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887
Length = 380
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 99 RRRDPNISGERRKYNAASRSYKKVIAK 19
RRR SGE KYN++ ++K+++AK
Sbjct: 310 RRRMMMTSGEAVKYNSSLDAFKQIVAK 336
>01_05_0396 + 21742449-21742659,21742961-21742965
Length = 71
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 194 GTSEEGINNSIPWSTTSLRRSHRRQDQQRKSRTAP 298
G SEE + +S S+T R HR D++ + T P
Sbjct: 17 GVSEEEVTDSKTDSSTRPLRRHRLLDEEEEEETTP 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,126,112
Number of Sequences: 37544
Number of extensions: 620374
Number of successful extensions: 1911
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1911
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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