Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060517.seq
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16491| Best HMM Match : MutS_V (HMM E-Value=8.2e-11) 45 6e-05
SB_8214| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_27764| Best HMM Match : RVT_1 (HMM E-Value=3.99931e-42) 43 2e-04
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 42 4e-04
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_24072| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46) 41 0.001
SB_42183| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_45005| Best HMM Match : RVT_1 (HMM E-Value=6.6e-32) 32 0.35
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_58606| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_7984| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_28936| Best HMM Match : PAPA-1 (HMM E-Value=8.6) 29 3.3
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 4.4
SB_58547| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_45816| Best HMM Match : Exo_endo_phos (HMM E-Value=0.004) 28 5.8
SB_41342| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_23371| Best HMM Match : SRCR (HMM E-Value=0) 28 7.6
SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96) 28 7.6
>SB_16491| Best HMM Match : MutS_V (HMM E-Value=8.2e-11)
Length = 877
Score = 44.8 bits (101), Expect = 6e-05
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = -3
Query: 506 SLLDLLLTTDPAGYSVVVDAP-LGSSDHCLIRAAVPLSRPDRRTTTGYRRVWRYMSADWD 330
++LDL+LT+ P+ + + + S+DH LI + L+ + T R V+ Y ADW
Sbjct: 720 NILDLILTSIPSKFHHIHGFDDIISTDHKLISFELDLNISKKTKTK--RVVYNYKRADWT 777
Query: 329 GLREFYASYPWGRFCFSSAD 270
GL E + PW CFS +D
Sbjct: 778 GLNESLKNIPWD-LCFSQSD 796
>SB_8214| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = -3
Query: 506 SLLDLLLTTDPAGYSVVVDAP-LGSSDHCLIRAAVPLSRPDRRTTTGYRRVWRYMSADWD 330
++LDL+LT+ P+ + + + S+DH LI + L+ + T R V+ + ADW
Sbjct: 34 NILDLILTSIPSKFHHIHGFDDIISTDHKLISFELDLNISKKTKTK--RVVYNFKRADWT 91
Query: 329 GLREFYASYPWGRFCFSSAD 270
GL E + PW CFS +D
Sbjct: 92 GLNESLKNIPWD-LCFSQSD 110
>SB_27764| Best HMM Match : RVT_1 (HMM E-Value=3.99931e-42)
Length = 715
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = -3
Query: 506 SLLDLLLTTDPAGYSVVVDAP-LGSSDHCLIRAAVPLSRPDRRTTTGYRRVWRYMSADWD 330
++LDL+LT+ P+ + + + S+DH LI + L+ + T R V+ + ADW
Sbjct: 179 NILDLILTSIPSKFHHIHGFDDIISTDHKLISFELDLNISKKTKTK--RVVYNFKRADWT 236
Query: 329 GLREFYASYPWGRFCFSSAD 270
GL E + PW CFS +D
Sbjct: 237 GLNESLKNIPWD-LCFSQSD 255
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 41.9 bits (94), Expect = 4e-04
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = -3
Query: 512 RASL--LDLLLTTDPAGYSVVVDAPLGSSDHCLIRAAVPLSRPDRRTTTGYRRVWRYMSA 339
RASL LDL+L++ PA S V +P G SDH ++ ++ L RR+ RV+ + A
Sbjct: 139 RASLKTLDLVLSSTPAMVSDVDTSP-GMSDHDIVTFSITLC--PRRSVRPPHRVYLFDKA 195
Query: 338 DWDGLREFYAS 306
+WDG R+ S
Sbjct: 196 NWDGFRQHVTS 206
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 41.9 bits (94), Expect = 4e-04
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = -3
Query: 512 RASL--LDLLLTTDPAGYSVVVDAPLGSSDHCLIRAAVPLSRPDRRTTTGYRRVWRYMSA 339
RASL LDL+L++ PA S V +P G SDH ++ ++ L RR+ RV+ + A
Sbjct: 391 RASLKTLDLVLSSTPAMVSDVDTSP-GMSDHDIVTFSITLC--PRRSVRPPHRVYLFDKA 447
Query: 338 DWDGLREFYAS 306
+WDG R+ S
Sbjct: 448 NWDGFRQHVTS 458
>SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 41.9 bits (94), Expect = 4e-04
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = -3
Query: 512 RASL--LDLLLTTDPAGYSVVVDAPLGSSDHCLIRAAVPLSRPDRRTTTGYRRVWRYMSA 339
RASL LDL+L++ PA S V +P G SDH ++ ++ L RR+ RV+ + A
Sbjct: 339 RASLKTLDLVLSSTPAMVSDVDTSP-GMSDHDIVTFSITLC--PRRSVRPPHRVYLFDKA 395
Query: 338 DWDGLREFYAS 306
+WDG R+ S
Sbjct: 396 NWDGFRQHVTS 406
>SB_24072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 822
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = -3
Query: 506 SLLDLLLTTDPAGYSVVVDAP-LGSSDHCLIRAAVPLSRPDRRTTTGYRRVWRYMSADWD 330
++LD +LT+ P+ + + + S+DH LI + L+ + T R V+ + ADW
Sbjct: 172 NILDFILTSIPSKFQHIHGFDDIISTDHKLISFELDLNISKKTKTK--RVVYNFKRADWT 229
Query: 329 GLREFYASYPWGRFCFSSAD 270
GL E + PW CFS +D
Sbjct: 230 GLNESLKNIPWD-LCFSQSD 248
>SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)
Length = 1232
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = -3
Query: 497 DLLLTTDPAGYSVVVDAP-LGSSDHCLIRAAVPLSRPDRRTTTGYRRVWRYMSADWDGLR 321
DL+LT+ P+ + + + S+DH LI + L+ + T R V+ + ADW GL
Sbjct: 495 DLILTSIPSKFQHIHGFDDIISTDHKLISFELDLNISKKTKTK--RVVYNFKRADWTGLN 552
Query: 320 EFYASYPWGRFCFSSAD 270
E + PW CFS +D
Sbjct: 553 ESLKNIPWD-LCFSQSD 568
>SB_42183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +1
Query: 343 DIYRQTLRYPVVVRRSGRESGTAARIRQ*SDDPSGASTTTLYPAGSVVSRRS 498
D +R+ R V R GRE GTA R+ PS + T + GS RR+
Sbjct: 188 DFWREAKRRFVRPSRGGREEGTAKRLPPRQSAPSRSMAITSFLCGSTFERRT 239
>SB_45005| Best HMM Match : RVT_1 (HMM E-Value=6.6e-32)
Length = 871
Score = 32.3 bits (70), Expect = 0.35
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Frame = -3
Query: 509 ASLLDLLLTTDPAGYSVVVDAPLGSSDHCLIRAAVPLS--RPDR-RTTTGYRRVWRYMSA 339
A+LLD++ T P + + +G SDH L+ A LS P++ +T YR++ +
Sbjct: 247 ATLLDVIYTNHPDRIACSGVSHVGISDHSLVYAYRKLSIGPPNKGHSTIIYRKLKNF--- 303
Query: 338 DWDGLREFYASYPWGRFCFSSADPDV 261
++D R AS W F S DP+V
Sbjct: 304 NYDAFRADIASLNW-NFLNSYNDPNV 328
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -2
Query: 645 TLTTKSGWGPEPLTSRVGLPTISPWPTASPSW*HSPPVSQISRGT 511
T + G GP P + LP +SP P A P+ SP VS R +
Sbjct: 2313 TTSVAMGAGPPPSATGQALPVMSPAPVAMPTGGLSPIVSPAVRSS 2357
>SB_58606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 365 RRVWRYMSADWDGLREFYASYPWGRFCFSSAD 270
R V+ + ADW GL E + PW C S +D
Sbjct: 40 RVVYNFKRADWTGLNESLKNIPWD-LCLSQSD 70
>SB_7984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 341 ADWDGLREFYASYPWGRFCFSSAD 270
ADW GL E + PW CFS +D
Sbjct: 282 ADWTGLNESLKNIPWD-LCFSQSD 304
>SB_28936| Best HMM Match : PAPA-1 (HMM E-Value=8.6)
Length = 339
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 193 GHFRRGNKQFHPLEHHVFKTVAQTSGSAEEKQNRPH 300
G +RG+ PLE+H + + + ++Q+RPH
Sbjct: 268 GRRQRGDTGQRPLEYHEMCAIERAFSAQSQRQSRPH 303
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -3
Query: 242 TWCSRGWNCLFPLLKCPLGVAADPGITMPAG 150
T C GW C L P G DPG PAG
Sbjct: 2757 TLCEAGWYCNISGLAAPQG-QCDPGYYCPAG 2786
>SB_58547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 180 SRPWYNNASRDAARLKRSAYVAWDNARRRRDPNISG 73
S PWY S+D R KR VA D R+ P + G
Sbjct: 118 SVPWYTERSKDGPR-KRLLRVAKDRPRKHVRPEVLG 152
>SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = -2
Query: 243 DVVLQGMELFIPSSEVPVGGRSRPWYNNASRDAARLKRSAYVA 115
++ + +E+F+P+ V V +PW ++ + ++SA+ A
Sbjct: 610 EIFCKAIEIFLPARRVRVCSSDKPWVSSRLKSLVSRRQSAFKA 652
>SB_45816| Best HMM Match : Exo_endo_phos (HMM E-Value=0.004)
Length = 377
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 174 PWYNNASRDAARLKRSAYVAWDNARRRRDPNISGERRKY 58
PWYN+ A R +R A W ++ DP ++R +
Sbjct: 328 PWYNDEIDQAKRARRKAERKWRKSKLPSDPADFKKKRNH 366
>SB_41342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 257 ATVLKTWCSRGWNCLFPLLKCPLGVAADPGITMPAGMLH 141
+TVL T+C G C + P + DPG+ G LH
Sbjct: 61 STVLSTYCLVGPWCSARVRSSPPVASLDPGVRQEYGPLH 99
>SB_23371| Best HMM Match : SRCR (HMM E-Value=0)
Length = 345
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 510 SFFVGPSADHRSGRIQCGGRRSAW 439
S+ GP+ DH +GR++ G ++ W
Sbjct: 218 SWNTGPTHDHTTGRVRLAGTQNPW 241
>SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)
Length = 725
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = -3
Query: 386 RRTTTGYRRVWRYMSADWDGLREFYASYPWGRFCFSSADPDVCATVLKT 240
R + GY Y A DG ASY CFSSA +C + T
Sbjct: 624 RFASPGYVLSANYACATDDGFHRLSASYIPYLCCFSSATDLICRVIFTT 672
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,928,691
Number of Sequences: 59808
Number of extensions: 634334
Number of successful extensions: 2637
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2636
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -