Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060517.seq
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ... 34 0.10
AC024876-7|AAF60890.4| 211|Caenorhabditis elegans Hypothetical ... 31 0.54
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 31 0.94
U41021-4|AAA82334.1| 348|Caenorhabditis elegans Uncoordinated p... 29 2.2
AF035583-1|AAD09435.1| 348|Caenorhabditis elegans UNC-97 protein. 29 2.2
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.8
U53338-2|AAA96190.2| 558|Caenorhabditis elegans Ammonium transp... 29 3.8
Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 28 6.7
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 28 6.7
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 28 6.7
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 27 8.8
AC006615-7|AAK68227.1| 450|Caenorhabditis elegans Hypothetical ... 27 8.8
>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
protein Y20F4.4 protein.
Length = 1319
Score = 33.9 bits (74), Expect = 0.10
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Frame = +1
Query: 169 PGSAATPNGH-FRRGNKQFHPLEHHVFKTVAQTSGSAEEKQNRPHG*DA*NSRSPSQSAD 345
P A++ NG+ FR G H FK+ A A+ N H SRS +
Sbjct: 303 PSPASSQNGNLFRNGTGSQHRGSPTDFKSKAPAKPPAQNG-NASHNEHRSRSRSRATVPR 361
Query: 346 IYRQTLRYPVVVRRSGRESGTAARIRQ*SDDPSGASTTTLYPAGSVVSRRSNKEARAP 519
+ + R+G S +R R + P GAS+ + PA S SR ++ AP
Sbjct: 362 SAQYRSEHQTEHARTGSSSHHESRSRAAAAAPVGASSQSKPPAPSPTSRETDSIPEAP 419
>AC024876-7|AAF60890.4| 211|Caenorhabditis elegans Hypothetical
protein Y94H6A.7 protein.
Length = 211
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 163 VIPGSAATPNGHFRRGNKQFHPLEHHVFKTVAQTS 267
V+ G P+ ++ G+KQF + H+ TVA TS
Sbjct: 65 VMAGKREVPDPYYESGSKQFDEVLQHIMATVAATS 99
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 30.7 bits (66), Expect = 0.94
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -3
Query: 548 DTAHPCPRYRGARASLLDLLLTTDPAGYSVVVDAPLGSSDHCLIRAAVPLSRPDRRT 378
++ CP Y G+ S TT + Y + +AP+ + + A+ P+ P R T
Sbjct: 251 ESVKDCPEYNGSETSYRAPKTTTSSSSYGSIAEAPVDPTPYA--PASAPVYSPPRTT 305
>U41021-4|AAA82334.1| 348|Caenorhabditis elegans Uncoordinated
protein 97 protein.
Length = 348
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 299 WGRFCFSSADP---DVCATVLKTWCSRGWNCLF 210
+G CF DP +V + KTWC + ++C F
Sbjct: 260 FGNLCFKCGDPCCGEVFQALQKTWCVKCFSCSF 292
>AF035583-1|AAD09435.1| 348|Caenorhabditis elegans UNC-97 protein.
Length = 348
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 299 WGRFCFSSADP---DVCATVLKTWCSRGWNCLF 210
+G CF DP +V + KTWC + ++C F
Sbjct: 260 FGNLCFKCGDPCCGEVFQALQKTWCVKCFSCSF 292
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/57 (36%), Positives = 21/57 (36%)
Frame = +1
Query: 40 GPGSGVIFPPFP*DVRIPTSPGIIPCHVCGPLEACSIPAGIVIPGSAATPNGHFRRG 210
GPG FPP P PG P GP S P G PG P G F G
Sbjct: 262 GPGMPRAFPPGASAPVAPGMPGAFPPGQGGPGMPGSFPPGAPGPGGPGMP-GSFAPG 317
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -3
Query: 209 PLLKCPLGVAADPGITMPAGMLHASSGPHTWHGI-MPGDVGILTSQGKGGN 60
P CP G A PG P G A P G PG G + G GN
Sbjct: 149 PCKPCPQGPAGAPGAPGPQGDAGAPGAPGQGSGAGAPGPAGPKGASGAPGN 199
>U53338-2|AAA96190.2| 558|Caenorhabditis elegans Ammonium
transporter homolog protein4 protein.
Length = 558
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 284 SRTAPMGRMRKIHAVHPNL-LTYTAKLFDTRSSFDDQDE 397
S+ P+GR +I +VHP + L A ++D S + D+
Sbjct: 452 SKHLPVGRKNRIMSVHPEMSLEQLASVYDRTGSVGESDQ 490
>Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 254 SHRRQDQQRKSRTAPMGRMRKIHAVHPNLLTYTAKLFDTRSSFDDQDERVVRQ 412
S RR+D ++KSR ++K A +++ TA+L R D E VV +
Sbjct: 166 SRRRRDLEKKSRAVEEAMIKKEEA-ERQVVSITAELRKKRRDIDKTKESVVER 217
>Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 254 SHRRQDQQRKSRTAPMGRMRKIHAVHPNLLTYTAKLFDTRSSFDDQDERVVRQ 412
S RR+D ++KSR ++K A +++ TA+L R D E VV +
Sbjct: 166 SRRRRDLEKKSRAVEEAMIKKEEA-ERQVVSITAELRKKRRDIDKTKESVVER 217
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = -3
Query: 209 PLLKCPLGVAADPGITMPAGMLHASSGPHT-WHGIMPGDVGILTSQGKGGN 60
P CP G A PG PAG A+ P + PG G G GN
Sbjct: 144 PCKPCPAGPAGAPGPAGPAGDAGANGNPGAPGNDGQPGAPGNKGPSGPNGN 194
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = -3
Query: 209 PLLKCPLGVAADPGITMPAGMLHASSGPHT-WHGIMPGDVGILTSQGKGGN 60
P CP G A PG PAG A+ P + PG G G GN
Sbjct: 144 PCKPCPAGPAGAPGPAGPAGDAGANGNPGAPGNDGQPGAPGNKGPSGPNGN 194
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = -3
Query: 209 PLLKCPLGVAADPGITMPAGMLHASSGPHT-WHGIMPGDVGILTSQGKGGN 60
P CP G A PG PAG A+ P + PG G G GN
Sbjct: 144 PCKPCPAGPAGAPGPAGPAGDAGANGNPGAPGNDGQPGAPGNKGPSGPNGN 194
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = -3
Query: 209 PLLKCPLGVAADPGITMPAGMLHASSGPHT-WHGIMPGDVGILTSQGKGGN 60
P CP G A PG PAG A+ P + PG G G GN
Sbjct: 144 PCKPCPAGPAGAPGPAGPAGDAGANGNPGAPGNDGQPGAPGNKGPSGPNGN 194
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -3
Query: 209 PLLKCPLGVAADPGITMPAGMLHASSGPHT-WHGIMPGDVGILTSQGKGGN 60
P CP G A PG PAG A+ P PG G G GN
Sbjct: 144 PCKPCPAGPAGAPGPAGPAGDAGANGNPGAPGQDGQPGAPGNKGPSGPNGN 194
>AC006615-7|AAK68227.1| 450|Caenorhabditis elegans Hypothetical
protein C36B7.1 protein.
Length = 450
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 335 WDGLREFYASYPWGRFCFSSADP 267
W G+ +FY Y + R CF +P
Sbjct: 354 WGGIHQFYTEYFFPRHCFEWLNP 376
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,680,544
Number of Sequences: 27780
Number of extensions: 445938
Number of successful extensions: 1446
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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