Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060517.seq
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.4  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           23   3.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.9  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 540 PPVSQISRGTSFFVGPSADHRSGRIQCGGRRSA 442
           PP +++    + +     DH SG    GG RSA
Sbjct: 81  PPYNRMDMRNATYYQHQQDHGSGMDGMGGYRSA 113


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
 Frame = +3

Query: 399 EWYGSTNKAV----IRRSKRSVDHHTVSGRICGQQKVQQRSSCPSISGTRVGCVTSWEKP 566
           EW+G   K +    +     SV +H +S    G  +        SISGT + C T  E  
Sbjct: 194 EWFGGNPKRITLIGLSAGGASVHYHYLSPLSAGLFQ-----GGISISGTALNCWTQTENS 248

Query: 567 *AKAK 581
             KAK
Sbjct: 249 LEKAK 253


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
 Frame = +3

Query: 399 EWYGSTNKAV----IRRSKRSVDHHTVSGRICGQQKVQQRSSCPSISGTRVGCVTSWEKP 566
           EW+G   K +    +     SV +H +S    G  +        SISGT + C T  E  
Sbjct: 65  EWFGGNPKRITLIGLSAGGASVHYHYLSPLSAGLFQ-----GGISISGTALNCWTQTENS 119

Query: 567 *AKAK 581
             KAK
Sbjct: 120 LEKAK 124


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
 Frame = +3

Query: 399 EWYGSTNKAV----IRRSKRSVDHHTVSGRICGQQKVQQRSSCPSISGTRVGCVTSWEKP 566
           EW+G   K +    +     SV +H +S    G  +        SISGT + C T  E  
Sbjct: 194 EWFGGNPKRITLIGLSAGGASVHYHYLSPLSAGLFQ-----GGISISGTALNCWTQTENS 248

Query: 567 *AKAK 581
             KAK
Sbjct: 249 LEKAK 253


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 153 RDAARLKRSAYVAWDNARRRRDPNI 79
           +DA ++     V W N R +R  NI
Sbjct: 342 KDACQMDSGGPVLWQNPRTKRLVNI 366


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 110 IMPGDVGILTSQGKGGNIT 54
           +MP D+ +  S G GG ++
Sbjct: 173 VMPHDIAVNASTGNGGLVS 191


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 494 GPTKKLVPLDIWDTGG 541
           GP   L+PL +W  GG
Sbjct: 152 GPRNGLLPLLVWIYGG 167


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 494 GPTKKLVPLDIWDTGG 541
           GP   L+PL +W  GG
Sbjct: 152 GPRNGLLPLLVWIYGG 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,398
Number of Sequences: 438
Number of extensions: 5499
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)