Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060516.seq
         (677 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6C0Q5 Cluster: Yarrowia lipolytica chromosome F of str...    34   3.7  
UniRef50_UPI0000E49875 Cluster: PREDICTED: similar to VWF-cleavi...    33   6.4  

>UniRef50_Q6C0Q5 Cluster: Yarrowia lipolytica chromosome F of strain
           CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
           lipolytica|Rep: Yarrowia lipolytica chromosome F of
           strain CLIB122 of Yarrowia lipolytica - Yarrowia
           lipolytica (Candida lipolytica)
          Length = 137

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = -2

Query: 157 CHSLDTVHKPPAYIFLCSLRRKFRVSNGPVSATS 56
           CH LDT    PA   LC + R   VS GP  ATS
Sbjct: 8   CHILDTTRGRPAENVLCQIYRIGNVSGGPQRATS 41


>UniRef50_UPI0000E49875 Cluster: PREDICTED: similar to VWF-cleaving
            protease Adamts-13; n=1; Strongylocentrotus
            purpuratus|Rep: PREDICTED: similar to VWF-cleaving
            protease Adamts-13 - Strongylocentrotus purpuratus
          Length = 1216

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
 Frame = +1

Query: 232  IALAPITSPCKYVFV--SGTRSDLHYPSKHPT-RKCIFEVVVA*RIR 363
            I ++  TS C  VF+  SGT +  +YPS++P  ++C++ +V    +R
Sbjct: 1092 IPISVSTSDCDRVFLEESGTLTSPNYPSRYPADQRCVYHIVAPPNVR 1138


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,074,425
Number of Sequences: 1657284
Number of extensions: 12491033
Number of successful extensions: 28833
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28827
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)