Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060516.seq
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    28   1.1  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   1.9  
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po...    26   4.4  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   5.8  

>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/58 (22%), Positives = 23/58 (39%)
 Frame = -3

Query: 435 SLGKFVPACGIRTPVHRYIPMHRTSYSLGHDDFKDTFARRVLGWIMEVRPCAANEYVL 262
           SL  +    G   PVH+ +P  R  +SL     + +  +  + W     PC     ++
Sbjct: 49  SLTSYTQFIGHEGPVHQVLPQERGVFSLSSKSLRLSNRKGTIRWRYHSVPCVQRSMII 106


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
 Frame = -2

Query: 604 CFTAEIGRAVVPTRAGLTRGPTTSNY---TNYNFCGSIFITRCYSFTVEINSEHLLSTYF 434
           CF + IG  V PT+  +T   T       TN +   ++  +R +   ++ NS  +L +  
Sbjct: 535 CFCSSIGLTVSPTKTKITNSYTDKILFLGTNISHSKNVTFSRHFGI-LQRNSGFILLSAP 593

Query: 433 IRKICTRLRDSNTGASVHTNAPDVLFFRPRRLQRYI 326
           + +I  +LR+  TG  ++     V+ + P  +++ I
Sbjct: 594 MDRIAKKLRE--TGLMLNHKGRSVIRWLPLDVRQII 627


>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 299 WRSDLVPLTNTYLQGDVMGANAIGV 225
           +RSDLV L + Y   D +G N +G+
Sbjct: 170 FRSDLVDLLSLYKAVDKIGVNRVGI 194


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 531 ITQIIIFAVRFLLHDVIPSPWKSIVNI 451
           +T  I+  + F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,100
Number of Sequences: 5004
Number of extensions: 51865
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)