Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060516.seq
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)                 31   1.1  
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)                   29   2.6  
SB_40409| Best HMM Match : HSBP1 (HMM E-Value=5.3)                     29   2.6  
SB_58390| Best HMM Match : DUF1167 (HMM E-Value=0)                     28   8.0  

>SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)
          Length = 2253

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -2

Query: 151  SLDTVHKPPAYIFLCSLRRKFRVSNGPVSATSTLSS 44
            SLDTV  P  Y  + ++ R+FR +  P SA + LSS
Sbjct: 2042 SLDTVSSPDTYPII-AINRRFRRNQHPTSAQTLLSS 2076


>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
          Length = 364

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 120 IYSYVASEE-NSESQMGQSQRLQRFHRSQDFRYYCTEHPRA 1
           I  Y  S+  N+ES   +S R  RF RS   R Y  E PRA
Sbjct: 229 ITEYSPSQSINTESSPSRSTRTDRFDRSYSPRKYDLEKPRA 269


>SB_40409| Best HMM Match : HSBP1 (HMM E-Value=5.3)
          Length = 319

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 426 KFVPACGIRTPVHRYIPMHRTSYSLGHDDFKDTFARRVLGWIMEVRP 286
           ++ P C  +     Y  +   SY+L  DDFK      V  WI   RP
Sbjct: 161 QYYPDCLAQALYASYCDVFPRSYNLFDDDFKTDLMNGVYEWITGTRP 207


>SB_58390| Best HMM Match : DUF1167 (HMM E-Value=0)
          Length = 734

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 136 HKPPAYIFLCSLRRKFRVSNGPVSATSTLSSESGF*VLLHG 14
           H PP    +  ++R+ R    P S TS+  S+SG   LLHG
Sbjct: 555 HNPPLCDAVSRVQRQHR---RPASVTSSSDSDSGLEELLHG 592


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,210,229
Number of Sequences: 59808
Number of extensions: 421791
Number of successful extensions: 1259
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)