Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060516.seq
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    29   2.3  
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    29   2.3  
U97551-3|AAB52860.2|  215|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z70311-4|CAA94373.1|  541|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AL034365-3|CAA22261.1|  563|Caenorhabditis elegans Hypothetical ...    28   7.0  
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
           receptor protein 2 protein.
          Length = 1338

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 499 FITRCYSFTVEINSEHLLSTYFIRKICTRLRDSNTGASVHTNAPDVL 359
           F +RCYS T+E N +   +    +  C     S +G S+ T+ PD L
Sbjct: 337 FDSRCYSMTIETNEKKQRTMEDAQTYC-----SQSGGSIITSPPDAL 378


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
           protein LAT-2 protein.
          Length = 1338

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 499 FITRCYSFTVEINSEHLLSTYFIRKICTRLRDSNTGASVHTNAPDVL 359
           F +RCYS T+E N +   +    +  C     S +G S+ T+ PD L
Sbjct: 337 FDSRCYSMTIETNEKKQRTMEDAQTYC-----SQSGGSIITSPPDAL 378


>U97551-3|AAB52860.2|  215|Caenorhabditis elegans Hypothetical
           protein T01B10.5 protein.
          Length = 215

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 454 HLLSTYFIRKICTRLRDSNTGASVHTNAPDVLFF 353
           H L   F+ +I   L +  +  +VHTN P + FF
Sbjct: 62  HFLLPIFVYQILWLLSNIGSAVTVHTNTPYIFFF 95


>Z70311-4|CAA94373.1|  541|Caenorhabditis elegans Hypothetical
           protein T25B9.5 protein.
          Length = 541

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 669 VSSKVSVXLQRVPHPSNRNFITASRQK*AERWYLPA 562
           ++ K SV  Q++P  S R+F ++ R+K  ++  LPA
Sbjct: 470 LNRKKSVDRQKIPSSSKRSFFSSLRKKNKDQVTLPA 505


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 117  YSYVASEENSESQMGQSQRLQRFHRSQD 34
            YS  +SE  SES   QS +++R H S D
Sbjct: 1797 YSSSSSETESESSAPQSSQVRRLHESLD 1824


>AL034365-3|CAA22261.1|  563|Caenorhabditis elegans Hypothetical
           protein Y69E1A.3 protein.
          Length = 563

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 669 VSSKVSVXLQRVPHPSNRNFITASRQK*AERWYLPA 562
           ++ K SV  Q++P  S R+F ++ R+K  ++  LPA
Sbjct: 492 LNRKKSVDRQKIPSSSKRSFFSSLRKKNKDQVTLPA 527


>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
           protein F54D11.2 protein.
          Length = 1145

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 529 YTNYNFCGSIFITRCYSFTVEINSEHLLSTYF-IRKICTRLRDSNTG 392
           YT  N C    IT  + F +E    H+L++Y  I K   RL  S  G
Sbjct: 659 YTIANNCTEDAITWTHQFMIENLEVHMLASYLSILKYAKRLNSSRFG 705


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,642,355
Number of Sequences: 27780
Number of extensions: 299913
Number of successful extensions: 777
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)