Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060515.seq
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    28   1.4  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   4.4  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    25   7.7  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 574 VPTRADLQEVLPPVITQIIIFAVRFLLHDVIPSPWKSIVNI 452
           +P R  L++V    +T  I+  + F+LHD   S W+S+V I
Sbjct: 208 IPRRHFLRDVA--FLTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/58 (20%), Positives = 22/58 (37%)
 Frame = -3

Query: 436 SLGKFVPACGIRTPXHRYIPMHRTSYSLGHDDFKDTFARRVLGWIMEVRPCAANEYVL 263
           SL  +    G   P H+ +P  R  +SL     + +  +  + W     PC     ++
Sbjct: 49  SLTSYTQFIGHEGPVHQVLPQERGVFSLSSKSLRLSNRKGTIRWRYHSVPCVQRSMII 106


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 619 TETHYCFTAEIGRAVVPTRADLQEVLPPVITQIIIFAVRFLLHDVIPS 476
           TE   C+ AE+       +AD    +  V+T +++  ++F  HD + S
Sbjct: 684 TEMLVCYAAEL-------KADFDPYVNEVLTSVVLPGLKFFFHDGVRS 724


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,997
Number of Sequences: 5004
Number of extensions: 48957
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)