Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060515.seq
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0967 - 23110154-23110240,23110620-23110673,23111010-231111...    29   4.5  
08_02_1461 - 27299891-27301870                                         28   7.9  
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    28   7.9  

>08_02_0967 -
           23110154-23110240,23110620-23110673,23111010-23111177,
           23111432-23111534,23111664-23111988,23112091-23112181
          Length = 275

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -3

Query: 169 SAVPAIRSTQCTNHQPIYSYVASEENSESQMGQ 71
           +AVPA R+ + T+H+  ++Y++ +E      G+
Sbjct: 19  TAVPAARAQEETDHEEEFTYISGDEKGPEHWGK 51


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 629 HPSNRNSLLLHGRNRQSGGTYPRGLTRGPTTSNYTNYNF 513
           H ++    LL GR R  GG + RGL   P  S  T   +
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVSRMTGARY 320


>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 414 AGTNFPNEIRTQQMFTIDFHGEGITSC-NKNRTAKIIICVITGGRTSCKSARVGTTALPI 590
           +GT+   +    ++  +D  G GIT+C  +N   K    ++ G     ++ RV      +
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 591 SAV 599
           +AV
Sbjct: 89  NAV 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,009,974
Number of Sequences: 37544
Number of extensions: 329590
Number of successful extensions: 733
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)