Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060515.seq
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43930.1 68418.m05374 transducin family protein / WD-40 repea...    30   1.2  
At3g46400.1 68416.m05030 leucine-rich repeat protein kinase, put...    28   6.6  
At5g36960.1 68418.m04432 expressed protein  ; expression support...    27   8.8  
At1g63580.1 68414.m07187 protein kinase-related                        27   8.8  

>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
           sapiens]
          Length = 726

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 623 SNRNSLLLHGRNRQSGGTYPRGLTRGPTTSNYTNYNFCGSIFITR 489
           SN+ SL     NR S    P   + GP+  N    N   +IF+TR
Sbjct: 288 SNQTSLAAENENRTSSPPLPLATSSGPSGPNSVPGNSPSNIFLTR 332


>At3g46400.1 68416.m05030 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 883

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 601 FTAEIGRAVVPTRADLQEVLPPVITQIIIFAV 506
           F  E+G+ ++  +      LPP++T I +F V
Sbjct: 324 FVCEVGKCLLELKRTQNSTLPPLLTAIEVFTV 355


>At5g36960.1 68418.m04432 expressed protein  ; expression supported
           by MPSS
          Length = 137

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 245 PITSPCKYVFVSGTRSDLHYPSKHPTRKCIFE 340
           P  SP   V ++   S+ +Y  KH  RKC+ +
Sbjct: 51  PRLSPSSSVVLTQESSNCNYKQKHKKRKCVMD 82


>At1g63580.1 68414.m07187 protein kinase-related
          Length = 273

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
 Frame = -2

Query: 629 HPSNRNSLLLHGRNRQSGGTYPRGLTRGPTTSNYTNYNFC-GSIFITRC----YSFTVEI 465
           + SNRN++L   RN  S G+Y    T G + +       C G+I  T C    +S T+E+
Sbjct: 37  YQSNRNTVLSTLRNHSSLGSYYFNATAGLSPNTVYGMFLCIGNISKTSCSNCVHSATLEM 96

Query: 464 N---SEHLLSTYFIRKICTRLRDSNTXASVHTNAP 369
           +     H  S  F  +   R  D N+  S+  ++P
Sbjct: 97  DKSCESHDTSFMFSDECMVRYSD-NSFFSLVEDSP 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,400,479
Number of Sequences: 28952
Number of extensions: 258141
Number of successful extensions: 588
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)