Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060513.seq
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 48 2e-06
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 45 1e-05
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei... 40 4e-04
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein... 36 0.004
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family... 32 0.089
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|... 31 0.21
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar... 30 0.36
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 29 0.63
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 25 7.8
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 25 7.8
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family... 25 7.8
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 25 7.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 7.8
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 25 7.8
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 47.6 bits (108), Expect = 2e-06
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +1
Query: 508 ILVTGGAGFVGSHLVDILMMKGHEVIVVDNFFTGR 612
+LVTGGAG++GSH +L+ KG++V++VDN R
Sbjct: 9 VLVTGGAGYIGSHTCVVLLEKGYDVVIVDNLCNSR 43
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = +1
Query: 502 EKILVTGGAGFVGSHLVDILMMKGHEVIVVDN 597
E ILVTGGAG++GSH V L+ G++VI+VDN
Sbjct: 6 EYILVTGGAGYIGSHTVIELINHGYKVIIVDN 37
>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 505 KILVTGGAGFVGSHLVDILMMKGHEVIVVDNFFTGRKRNVEHWFGHRNFE 654
KI+V GG+GF+G ++ + + KG+EV+ V G N E W +E
Sbjct: 2 KIVVLGGSGFLGHNICKLAIAKGYEVVSVSRRGAGGLHNKEPWMDDVEWE 51
>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +1
Query: 505 KILVTGGAGFVGSHLVDILMMKGHEVI 585
+I VTG AGF+GS +V L+ GHEV+
Sbjct: 2 RIFVTGAAGFIGSEIVRQLLEAGHEVV 28
>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 31.9 bits (69), Expect = 0.089
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +1
Query: 502 EKILVTGGAGFVGSHLVDILMMKGHEVIVVDNF---FTGRKRNVEHWFGHRNFEMVP 663
E +L+TG GFV SH + L+ +G+ V F G +N W F VP
Sbjct: 3 ELVLITGITGFVASHSAEALLSQGYRVRGTYRFQEKLDGLLKNRPEWEKKVEFVQVP 59
>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 30.7 bits (66), Expect = 0.21
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 508 ILVTGGAGFVGSHLVDILMMKGHEV 582
+LVTG GF+G+H+ + L+ G+ V
Sbjct: 6 VLVTGVTGFIGAHVAEQLLQAGYRV 30
>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 29.9 bits (64), Expect = 0.36
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 505 KILVTGGAGFVGSHLVDILMMKGHEVIVV 591
K+L+TGG+ +G + I KGH+ +V
Sbjct: 3 KVLITGGSSGLGKRIAQIWSQKGHQCHIV 31
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 29.1 bits (62), Expect = 0.63
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 511 LVTGGAGFVGSHLVDILMMK 570
L+TGGAGF+GS+ +D + K
Sbjct: 13 LITGGAGFIGSNFLDYAVDK 32
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 122 VCHKISNVKANTEI*KDNFISVCA-ISADINISDHHKIEQ*TWADY 256
+ +K+ NVK+ T + + F+S S +N DH TW D+
Sbjct: 3 ILNKVKNVKSYTRLVRQGFLSQQRNHSVSVNEVDHFNELAKTWWDW 48
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 254 YYKIAEEKRDITFRGFNIFPKDEYNNINKMNLQSSNEVTSDDTKHELAEAKN 409
+YKI R +TF ++ + N++K NL + N+ + H AE N
Sbjct: 133 HYKILSLLRVVTFDKDQVYAVGQKYNLDKNNLVNDNK-SQSTIPHMTAERLN 183
>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 499 KEKILVTGGAGFVGSHLVDILMMKGHEVIVVDN 597
K I++TGG+G +G ++ + +G V +D+
Sbjct: 35 KGLIVITGGSGILGHAIIQEALDRGFSVASLDS 67
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = +1
Query: 502 EKILVTGGAGFVGSHLVDILMMKGHEVIVVDNFFTGRKRNVEHWFGHRNFEMVP 663
+ +++ G + HL +L M V VD F + +H R+F + P
Sbjct: 584 KSMVIAAVIGLLSEHLWFLLRMFISSVFPVDKTFFAPAKERQHLLAERSFSIPP 637
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 350 QSSNEVTSDDTKHELAEAKNRIQXLEKKIAILEGRM 457
QSS E + K A K++I LEK+++ LE ++
Sbjct: 330 QSSFEEQLESHKEAEASLKSQINFLEKEVSSLESQL 365
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 428 KKIAILEGRMPQKYPEVKFLGYKERRRS 511
KKI +LEG+ ++ LGY + RRS
Sbjct: 642 KKIQLLEGQKRSPVKQLGRLGYNKLRRS 669
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,107
Number of Sequences: 5004
Number of extensions: 42250
Number of successful extensions: 162
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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