Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060513.seq
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30795| Best HMM Match : Epimerase (HMM E-Value=0) 46 3e-05
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38) 43 2e-04
SB_52454| Best HMM Match : 3HCDH_N (HMM E-Value=1.3) 34 0.12
SB_36790| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_32433| Best HMM Match : NAD_binding_4 (HMM E-Value=0.037) 31 1.2
SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05) 30 1.5
SB_8915| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 29 3.5
SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19) 29 4.7
SB_19882| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_26576| Best HMM Match : LMWPc (HMM E-Value=5.60519e-45) 29 4.7
SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0) 28 6.2
SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_41880| Best HMM Match : TolA (HMM E-Value=2.2) 28 8.1
SB_27525| Best HMM Match : PAS (HMM E-Value=0.99) 28 8.1
SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)
Length = 869
Score = 46.0 bits (104), Expect = 3e-05
Identities = 17/32 (53%), Positives = 27/32 (84%)
Frame = +1
Query: 502 EKILVTGGAGFVGSHLVDILMMKGHEVIVVDN 597
+K+LVTGGAG++GSH V ++ G+EV+++DN
Sbjct: 39 KKVLVTGGAGYIGSHCVVEILNAGYEVVIIDN 70
>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
Length = 451
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +1
Query: 508 ILVTGGAGFVGSHLVDILMMKGHEVIVVDNFFTG 609
+LVTGGAG++GS LV IL+ +G++V V D F G
Sbjct: 143 VLVTGGAGYLGSSLVPILLDQGYKVTVYDRFLWG 176
>SB_52454| Best HMM Match : 3HCDH_N (HMM E-Value=1.3)
Length = 114
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 502 EKILVTGGAGFVGSHLVDILMMKGHEVIVVD 594
+K++VTGGAG+ GS L L KG EV + D
Sbjct: 12 KKVVVTGGAGYFGSRLGYALSEKGAEVTLFD 42
>SB_36790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +1
Query: 508 ILVTGGAGFVGSHLVDILMMKGH 576
I+VTGGAGF+GS++V L KG+
Sbjct: 5 IIVTGGAGFIGSNIVKALNDKGY 27
>SB_32433| Best HMM Match : NAD_binding_4 (HMM E-Value=0.037)
Length = 116
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1
Query: 508 ILVTGGAGFVGSHLVDILMMK 570
ILVTGG G VGSHL+ L +K
Sbjct: 2 ILVTGGTGLVGSHLLYELALK 22
>SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)
Length = 226
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 502 EKILVTGGAGFVGSHLVDILMMKGHEVIVV 591
+K++V GG G G H+V + +GH V V+
Sbjct: 8 KKVVVFGGTGKTGLHVVQQALDRGHHVTVI 37
>SB_8915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 131 YDKLDISNIXMFVLRYISYVGYNSTEREFSSVSW 30
YDK D+ N+ +L+Y Y +S + E +V W
Sbjct: 171 YDKEDLDNLRAHILKYGVYYFDDSDDNESDNVQW 204
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +2
Query: 320 EYNNINKMNLQSSNEVTS-----DDTKHELAEAKNRIQXLEKKI 436
+Y + K N+ EV + + +HEL AK RIQ LE++I
Sbjct: 1693 KYKKMEKWNVDLREEVIAHNARVQEVEHELDRAKKRIQELEEEI 1736
>SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1786
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 439 YFRRXNASKVP*SKVFRI*RKEKILVTGGAGFVGSHLVDILMMK 570
++ N +P K FR R+ +ILV GG G VG + ++ +MK
Sbjct: 905 HYELINIIFIPSLKFFRRFRRFRILVCGGDGSVGWVMKEVDLMK 948
>SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19)
Length = 672
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 505 KILVTGGAGFVGSHLVDILMMKGHEVI 585
++LVTG +GF+ H+V L+ +G ++
Sbjct: 17 RVLVTGASGFIACHVVKQLLEEGKFIV 43
>SB_19882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 63 IVSNVTYVSKHKHXYIRNVKFVIKLAMLRQTLKFRK 170
I+S+ + + KH ++ ++ VI + LR+TLKF +
Sbjct: 318 ILSDRQHAFRKKHSFVTQLRSVINVWALRKTLKFTR 353
>SB_26576| Best HMM Match : LMWPc (HMM E-Value=5.60519e-45)
Length = 620
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 511 LVTGGAGFVGSHLVDILMMKGHEVIVVDNFFTGRKRNVEHWFGHRN 648
LVTGG +G + + L +G V V+D G K E+ H +
Sbjct: 197 LVTGGGSGIGRAVCEALANRGASVSVIDLHGVGAKETSENLATHND 242
>SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)
Length = 1710
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 281 DITFRGFNIFPKDEYNNINKMNLQSSNEVTSDDTKHEL 394
+I RGFN+ KD Y ++ +N + V S EL
Sbjct: 1478 NIKLRGFNLLAKDPYPSVKPVNTEGDAWVLSFTDSEEL 1515
>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1449
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 338 KMNLQSSNEVTSDDTKHELAEAKNRIQXLEKKIAILEGRM-PQKYPEVKFLGYKERRRS 511
K L+S + + K E ++AKN Q EKK I E + P +Y +++ L + +++
Sbjct: 31 KRRLKSEKKAKEKEAKQEASKAKNPGQGEEKKKEIDEESLDPNQYFKIRSLAVEALKKT 89
>SB_41880| Best HMM Match : TolA (HMM E-Value=2.2)
Length = 374
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = +2
Query: 323 YNNINKMNLQSSNEVTSDDTKHELAEAKNRIQXLEKKIAILEGRMPQKYPEVKFLGYKER 502
+ ++ K ++ + + ++ + E E +NRI E+++ E K E K +G E
Sbjct: 177 HESVRKREIEEAVRIAQEEMRREREEEENRILEEEERVKREEEEKKAKEVEEKRMGEDEE 236
Query: 503 RRS**QEEL 529
+ +EE+
Sbjct: 237 QIKLKEEEV 245
>SB_27525| Best HMM Match : PAS (HMM E-Value=0.99)
Length = 448
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/80 (22%), Positives = 33/80 (41%)
Frame = +2
Query: 173 NFISVCAISADINISDHHKIEQ*TWADYYKIAEEKRDITFRGFNIFPKDEYNNINKMNLQ 352
NF V ++ + I + ++ TW Y + R + + PKDE ++ + +
Sbjct: 238 NFQEVTPVTWEDMIQQQQEYDRSTWDHYNNSRDADRGMDTPRLSPDPKDESMPSSEESTE 297
Query: 353 SSNEVTSDDTKHELAEAKNR 412
S E + E E +NR
Sbjct: 298 DSKESEESEAVDESNELQNR 317
>SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 554 STKCEPTKPAPPVTKIFSFLYILK 483
+T CE TKP P+ K FL+ LK
Sbjct: 3 TTGCEGTKPTYPIRKQLRFLFPLK 26
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,365,599
Number of Sequences: 59808
Number of extensions: 288481
Number of successful extensions: 716
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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