Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060513.seq
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva ... 99 3e-21
AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuroni... 99 3e-21
Z99709-12|CAI79146.1| 349|Caenorhabditis elegans Hypothetical p... 42 3e-04
Z99709-11|CAB16861.1| 347|Caenorhabditis elegans Hypothetical p... 42 5e-04
U40939-5|AAA81703.3| 343|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z92786-8|CAB07210.1| 325|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical pr... 31 0.77
Z81553-5|CAB04494.1| 382|Caenorhabditis elegans Hypothetical pr... 31 1.0
U41510-1|ABP49525.1| 327|Caenorhabditis elegans Hypothetical pr... 31 1.0
U12965-5|AAA20612.2| 346|Caenorhabditis elegans Serpentine rece... 31 1.0
AM231685-1|CAJ77754.1| 375|Caenorhabditis elegans GDP-mannose 4... 31 1.0
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF067618-4|AAY44003.1| 381|Caenorhabditis elegans Hypothetical ... 29 2.4
Z68215-14|CAL49436.1| 394|Caenorhabditis elegans Hypothetical p... 29 4.1
Z68215-13|CAL49435.1| 382|Caenorhabditis elegans Hypothetical p... 29 4.1
Z68215-10|CAC42269.1| 399|Caenorhabditis elegans Hypothetical p... 29 4.1
Z68215-9|CAC42270.1| 384|Caenorhabditis elegans Hypothetical pr... 29 4.1
U64862-7|AAB52622.1| 374|Caenorhabditis elegans Hypothetical pr... 29 4.1
AM231684-1|CAJ77753.1| 384|Caenorhabditis elegans GDP-mannose 4... 29 4.1
AM231683-1|CAJ77752.1| 399|Caenorhabditis elegans GDP-mannose 4... 29 4.1
Z68215-12|CAA92455.2| 368|Caenorhabditis elegans Hypothetical p... 28 7.2
Z22180-5|CAA80174.2| 717|Caenorhabditis elegans Hypothetical pr... 28 7.2
U58727-2|AAB00582.2| 462|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z66566-2|CAA91485.1| 537|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z66566-1|CAA91484.1| 515|Caenorhabditis elegans Hypothetical pr... 27 9.5
X60233-1|CAA42793.1| 537|Caenorhabditis elegans LIN-14A protein. 27 9.5
X60232-1|CAA42792.1| 515|Caenorhabditis elegans LIN-14B2 protein. 27 9.5
X60231-1|CAA42791.1| 539|Caenorhabditis elegans LIN-14B1 protein. 27 9.5
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 27 9.5
U41007-18|AAA82262.2| 295|Caenorhabditis elegans Hypothetical p... 27 9.5
U40953-3|AAB52650.1| 342|Caenorhabditis elegans Hypothetical pr... 27 9.5
>U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva
protein 1 protein.
Length = 467
Score = 99.1 bits (236), Expect = 3e-21
Identities = 41/54 (75%), Positives = 49/54 (90%)
Frame = +1
Query: 499 KEKILVTGGAGFVGSHLVDILMMKGHEVIVVDNFFTGRKRNVEHWFGHRNFEMV 660
+++IL+TGGAGFVGSHLVD LM+ GHEVI +DN+FTGRK+NVEHW GH NFEMV
Sbjct: 136 RKRILITGGAGFVGSHLVDKLMLDGHEVIALDNYFTGRKKNVEHWIGHPNFEMV 189
>AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuronic
acid decarboxylase protein.
Length = 467
Score = 99.1 bits (236), Expect = 3e-21
Identities = 41/54 (75%), Positives = 49/54 (90%)
Frame = +1
Query: 499 KEKILVTGGAGFVGSHLVDILMMKGHEVIVVDNFFTGRKRNVEHWFGHRNFEMV 660
+++IL+TGGAGFVGSHLVD LM+ GHEVI +DN+FTGRK+NVEHW GH NFEMV
Sbjct: 136 RKRILITGGAGFVGSHLVDKLMLDGHEVIALDNYFTGRKKNVEHWIGHPNFEMV 189
>Z99709-12|CAI79146.1| 349|Caenorhabditis elegans Hypothetical
protein C47B2.6b protein.
Length = 349
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +1
Query: 508 ILVTGGAGFVGSHLVDILMMKGHEVIVVDNFFTGRKRNVEH 630
ILVTG AGF+GSH V L+ G+ V+ +DNF EH
Sbjct: 3 ILVTGAAGFIGSHTVLELLNSGYTVLCIDNFANAISVTDEH 43
>Z99709-11|CAB16861.1| 347|Caenorhabditis elegans Hypothetical
protein C47B2.6a protein.
Length = 347
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +1
Query: 508 ILVTGGAGFVGSHLVDILMMKGHEVIVVDNF 600
ILVTG AGF+GSH V L+ G+ V+ +DNF
Sbjct: 3 ILVTGAAGFIGSHTVLELLNSGYTVLCIDNF 33
>U40939-5|AAA81703.3| 343|Caenorhabditis elegans Hypothetical
protein F13D11.4 protein.
Length = 343
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +1
Query: 505 KILVTGGAGFVGSHLVDILMMKGHEV 582
K+LVTG +GF+G+H V+IL+ G+ V
Sbjct: 7 KVLVTGASGFIGTHCVEILLKNGYRV 32
>Z92786-8|CAB07210.1| 325|Caenorhabditis elegans Hypothetical
protein F47H4.11 protein.
Length = 325
Score = 31.9 bits (69), Expect = 0.44
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 332 INKMNLQSSNEVTSDDTKHELAEAKNRIQXLEKKIAILEGRMPQKYPEVKFLGY 493
+N N SS++ ++D HE+ + I+ + K++ + R+ K P + FLGY
Sbjct: 267 LNFQNFVSSDQ-NNEDQAHEVLGTCDEIKYVNGKLSSKKWRLNLKIPSLNFLGY 319
>Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical
protein F17B5.1a protein.
Length = 777
Score = 31.1 bits (67), Expect = 0.77
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +2
Query: 275 KRDITFRGFNIFPKDEYNNINKMNLQSSNEVTSDDTKHELAEAKNRIQXLEKKIAILEGR 454
+RDI F+ NI + I++++ +E S + EL +KN+ + L KKIA +GR
Sbjct: 65 ERDIEFQEKNIA-----SLIDELSDNQDDESNSKEIHLELKSSKNKYEGLRKKIASFKGR 119
>Z81553-5|CAB04494.1| 382|Caenorhabditis elegans Hypothetical
protein F56H6.5 protein.
Length = 382
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +1
Query: 496 RKEKI-LVTGGAGFVGSHLVDILMMKGHEVI-VVDNFFTGRKRNVEHWFGH 642
R+ K+ L+TG G GS+L ++L+ KG++V ++ + +EH +G+
Sbjct: 31 RERKVALITGITGQDGSYLAELLLSKGYKVHGIIRRSSSFNTARIEHLYGN 81
>U41510-1|ABP49525.1| 327|Caenorhabditis elegans Hypothetical
protein ZC449.6 protein.
Length = 327
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +1
Query: 511 LVTGGAGFVGSHLVDILMMKGH--EVIVVD 594
++TGG GF+G+HL+ L G + IVVD
Sbjct: 8 VITGGGGFLGAHLIAALQKNGDRTKCIVVD 37
>U12965-5|AAA20612.2| 346|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 11 protein.
Length = 346
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -2
Query: 265 YFVVVRPCSLFDFVMIRYINISRDSTHRN-EIVFLNFSVCLNIANFMTNLT 116
Y +++ CS+F + +S+ S H N + +F+++ V L +A MT+LT
Sbjct: 26 YQMIISFCSVFPLIYFLLFKLSKSSFHGNLKTIFISYFVSL-VAFSMTHLT 75
>AM231685-1|CAJ77754.1| 375|Caenorhabditis elegans GDP-mannose
4,6-dehydratase protein.
Length = 375
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +1
Query: 496 RKEKI-LVTGGAGFVGSHLVDILMMKGHEVI-VVDNFFTGRKRNVEHWFGH 642
R+ K+ L+TG G GS+L ++L+ KG++V ++ + +EH +G+
Sbjct: 24 RERKVALITGITGQDGSYLAELLLSKGYKVHGIIRRSSSFNTARIEHLYGN 74
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 523 GAGFVGSHLVDILMMKGHEVIVVDNFFTGRKRNVEHWFGHRNFEM 657
GAGF+G+ + ++ + KG +++D G +R H H N ++
Sbjct: 359 GAGFMGAGIANVTINKGIRTVLLDANQAGVERGQNHVATHLNRQL 403
>AF067618-4|AAY44003.1| 381|Caenorhabditis elegans Hypothetical
protein F56H1.6 protein.
Length = 381
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 496 RKEKILVTGGAGFVGSHLVDILMMKGHEVIV 588
+++++L+ GGAG VGS + +L G E IV
Sbjct: 174 KQQRVLIHGGAGGVGSMAIQLLKAWGCEKIV 204
>Z68215-14|CAL49436.1| 394|Caenorhabditis elegans Hypothetical
protein C53B4.7e protein.
Length = 394
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 436 CYFRRXNASKVP*SKVFRI*RKEKILVTGGAGFVGSHLVDILMMKGHEV 582
C S P +++ ++ L+TG +G GS+L ++L+ KG++V
Sbjct: 24 CIGMSHEVSTTPAAELAAFRARKVALITGISGQDGSYLAELLLSKGYKV 72
>Z68215-13|CAL49435.1| 382|Caenorhabditis elegans Hypothetical
protein C53B4.7d protein.
Length = 382
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 436 CYFRRXNASKVP*SKVFRI*RKEKILVTGGAGFVGSHLVDILMMKGHEV 582
C S P +++ ++ L+TG +G GS+L ++L+ KG++V
Sbjct: 12 CIGMSHEVSTTPAAELAAFRARKVALITGISGQDGSYLAELLLSKGYKV 60
>Z68215-10|CAC42269.1| 399|Caenorhabditis elegans Hypothetical
protein C53B4.7b protein.
Length = 399
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 436 CYFRRXNASKVP*SKVFRI*RKEKILVTGGAGFVGSHLVDILMMKGHEV 582
C S P +++ ++ L+TG +G GS+L ++L+ KG++V
Sbjct: 29 CIGMSHEVSTTPAAELAAFRARKVALITGISGQDGSYLAELLLSKGYKV 77
>Z68215-9|CAC42270.1| 384|Caenorhabditis elegans Hypothetical
protein C53B4.7a protein.
Length = 384
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 436 CYFRRXNASKVP*SKVFRI*RKEKILVTGGAGFVGSHLVDILMMKGHEV 582
C S P +++ ++ L+TG +G GS+L ++L+ KG++V
Sbjct: 14 CIGMSHEVSTTPAAELAAFRARKVALITGISGQDGSYLAELLLSKGYKV 62
>U64862-7|AAB52622.1| 374|Caenorhabditis elegans Hypothetical
protein ZC8.1 protein.
Length = 374
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +1
Query: 511 LVTGGAGFVGSHLVDILMMKG--HEVIVVD 594
++ GG GF+G+H++ L G +IVVD
Sbjct: 5 VIVGGGGFLGAHVISALQKIGCKERIIVVD 34
>AM231684-1|CAJ77753.1| 384|Caenorhabditis elegans GDP-mannose
4,6-dehydratase protein.
Length = 384
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 436 CYFRRXNASKVP*SKVFRI*RKEKILVTGGAGFVGSHLVDILMMKGHEV 582
C S P +++ ++ L+TG +G GS+L ++L+ KG++V
Sbjct: 14 CIGMSHEVSTTPAAELAAFRARKVALITGISGQDGSYLAELLLSKGYKV 62
>AM231683-1|CAJ77752.1| 399|Caenorhabditis elegans GDP-mannose
4,6-dehydratase protein.
Length = 399
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 436 CYFRRXNASKVP*SKVFRI*RKEKILVTGGAGFVGSHLVDILMMKGHEV 582
C S P +++ ++ L+TG +G GS+L ++L+ KG++V
Sbjct: 29 CIGMSHEVSTTPAAELAAFRARKVALITGISGQDGSYLAELLLSKGYKV 77
>Z68215-12|CAA92455.2| 368|Caenorhabditis elegans Hypothetical
protein C53B4.7c protein.
Length = 368
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +1
Query: 496 RKEKI-LVTGGAGFVGSHLVDILMMKGHEV 582
R K+ L+TG +G GS+L ++L+ KG++V
Sbjct: 17 RARKVALITGISGQDGSYLAELLLSKGYKV 46
>Z22180-5|CAA80174.2| 717|Caenorhabditis elegans Hypothetical
protein K11H3.4 protein.
Length = 717
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 263 IAEEKRDITFRGFNIFPKDEYNNINKMNLQSSNEVTSDDTKHELAEAKNR 412
I + D FRGF+I PK +++ L+ +V D E +A+NR
Sbjct: 463 IPTKLEDFNFRGFSIKPKSNKRQLDRDPLKLPRKVNPRDL--EPTDARNR 510
>U58727-2|AAB00582.2| 462|Caenorhabditis elegans Hypothetical
protein D1005.2 protein.
Length = 462
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 212 ISDHHKIEQ*TWADYYKIAEEKRDITFRGFNIFPKDEYNNINKM 343
+ + H I+ +W K EEK +T + F K +N +NK+
Sbjct: 39 LENQHCIDWNSW----KFLEEKHQVTLKDLEPFDKSRFNILNKL 78
>Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical
protein T05F1.11 protein.
Length = 676
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +2
Query: 323 YNNINKMNLQSSNEVTSDDTKHELAEAKNRIQXLEKKIAILEGRMPQKYPEVKFLGYKER 502
YNN N++ + +++S++ EL A+N++ L + + GR QK G+++
Sbjct: 86 YNNHNELEEIRNEKLSSEERHFELESARNKLNGLRIQNSNF-GRREQKVCSFLSSGFEQV 144
Query: 503 R 505
R
Sbjct: 145 R 145
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 502 EKILVTGGAGFVGSHLVDILMMKGHEV 582
+KIL+ GGAG VG + I + G EV
Sbjct: 1732 DKILIHGGAGGVGQAAIAIALAAGCEV 1758
>Z66566-2|CAA91485.1| 537|Caenorhabditis elegans Hypothetical
protein T25C12.1b protein.
Length = 537
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = -1
Query: 659 TISKLRCPNQCSTFLFRPVKKLSTTMTS*PFIMRISTKCEPTKPAPPVTKIFSFLYILKT 480
T+ + CP Q L P L + P+IM S K P P P +I + I +T
Sbjct: 119 TVPQPECPGQIRPVLSSPAAALQNVIMLNPWIMGSSLK--PASPTLPNGQIPT--TIGET 174
Query: 479 LLQGT 465
LQGT
Sbjct: 175 SLQGT 179
>Z66566-1|CAA91484.1| 515|Caenorhabditis elegans Hypothetical
protein T25C12.1a protein.
Length = 515
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = -1
Query: 659 TISKLRCPNQCSTFLFRPVKKLSTTMTS*PFIMRISTKCEPTKPAPPVTKIFSFLYILKT 480
T+ + CP Q L P L + P+IM S K P P P +I + I +T
Sbjct: 97 TVPQPECPGQIRPVLSSPAAALQNVIMLNPWIMGSSLK--PASPTLPNGQIPT--TIGET 152
Query: 479 LLQGT 465
LQGT
Sbjct: 153 SLQGT 157
>X60233-1|CAA42793.1| 537|Caenorhabditis elegans LIN-14A protein.
Length = 537
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = -1
Query: 659 TISKLRCPNQCSTFLFRPVKKLSTTMTS*PFIMRISTKCEPTKPAPPVTKIFSFLYILKT 480
T+ + CP Q L P L + P+IM S K P P P +I + I +T
Sbjct: 119 TVPQPECPGQIRPVLSSPAAALQNVIMLNPWIMGSSLK--PASPTLPNGQIPT--TIGET 174
Query: 479 LLQGT 465
LQGT
Sbjct: 175 SLQGT 179
>X60232-1|CAA42792.1| 515|Caenorhabditis elegans LIN-14B2 protein.
Length = 515
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = -1
Query: 659 TISKLRCPNQCSTFLFRPVKKLSTTMTS*PFIMRISTKCEPTKPAPPVTKIFSFLYILKT 480
T+ + CP Q L P L + P+IM S K P P P +I + I +T
Sbjct: 97 TVPQPECPGQIRPVLSSPAAALQNVIMLNPWIMGSSLK--PASPTLPNGQIPT--TIGET 152
Query: 479 LLQGT 465
LQGT
Sbjct: 153 SLQGT 157
>X60231-1|CAA42791.1| 539|Caenorhabditis elegans LIN-14B1 protein.
Length = 539
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = -1
Query: 659 TISKLRCPNQCSTFLFRPVKKLSTTMTS*PFIMRISTKCEPTKPAPPVTKIFSFLYILKT 480
T+ + CP Q L P L + P+IM S K P P P +I + I +T
Sbjct: 121 TVPQPECPGQIRPVLSSPAAALQNVIMLNPWIMGSSLK--PASPTLPNGQIPT--TIGET 176
Query: 479 LLQGT 465
LQGT
Sbjct: 177 SLQGT 181
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 502 EKILVTGGAGFVGSHLVDILMMKGHEVIVVDN 597
EK L++GG G +GS +++ L K +I N
Sbjct: 5011 EKCLISGGTGGIGSAIINELKPKSSVIITRKN 5042
>U41007-18|AAA82262.2| 295|Caenorhabditis elegans Hypothetical
protein C33H5.1 protein.
Length = 295
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +2
Query: 170 DNFISVCAISADINISDHHKI--EQ*TWADY-YKIAEEKRDITFRGFNIFPKDEYNNINK 340
D I +C I+ +I+ + I E+ + D+ +++ E+KR I R FN+F ++ I
Sbjct: 222 DQGIKLCQINVEIHKDIENGITGERKMFHDFVWRLMEDKRYIMIRPFNVFWYHDFIRIVL 281
Query: 341 MNL 349
+N+
Sbjct: 282 INV 284
>U40953-3|AAB52650.1| 342|Caenorhabditis elegans Hypothetical
protein F53B1.4 protein.
Length = 342
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 508 ILVTGGAGFVGSHLVDILMMK 570
+L+TGG GF+GS+ ++ K
Sbjct: 11 VLITGGCGFIGSNYINFTFNK 31
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,444,727
Number of Sequences: 27780
Number of extensions: 240977
Number of successful extensions: 771
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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