Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060513.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   6.3  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   6.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.3  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   8.3  

>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 314 KDEYNNINKMNLQSSNEVTSDDTKHELAEAKNR 412
           K+E+ N+ ++ L+   +        E+AEA N+
Sbjct: 124 KEEFQNLKEVMLEVLRQALGKQYTPEVAEAWNK 156


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 314 KDEYNNINKMNLQSSNEVTSDDTKHELAEAKNR 412
           K+E+ N+ ++ L+   +        E+AEA N+
Sbjct: 124 KEEFQNLKEVMLEVLRQALGKQYTPEVAEAWNK 156


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 272 LQLFCSSPPM 243
           L +FC SPPM
Sbjct: 100 LMMFCMSPPM 109


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -1

Query: 35  SWQWHRQRNC 6
           +W+WH   NC
Sbjct: 233 NWEWHTVGNC 242


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 272 LQLFCSSPPM 243
           L +FC SPPM
Sbjct: 66  LMMFCMSPPM 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,506
Number of Sequences: 438
Number of extensions: 2912
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)