Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060512.seq
(678 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 111 4e-25
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 111 4e-25
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 111 4e-25
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 51 8e-07
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 50 2e-06
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 48 4e-06
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 48 6e-06
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 48 8e-06
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 46 2e-05
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 46 3e-05
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 45 4e-05
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 45 4e-05
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 45 5e-05
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 44 7e-05
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 44 9e-05
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 44 9e-05
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 44 9e-05
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 44 9e-05
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 44 9e-05
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 44 9e-05
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 44 9e-05
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 44 1e-04
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 43 2e-04
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 43 2e-04
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 43 2e-04
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 42 3e-04
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 42 3e-04
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 42 3e-04
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 42 5e-04
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 42 5e-04
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 41 7e-04
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 41 9e-04
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 41 9e-04
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 41 9e-04
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 41 9e-04
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 40 0.001
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 40 0.001
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 40 0.001
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 40 0.001
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 40 0.001
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 40 0.001
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 40 0.001
At5g23730.1 68418.m02782 transducin family protein / WD-40 repea... 40 0.002
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea... 40 0.002
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 40 0.002
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 40 0.002
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 39 0.003
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 39 0.003
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 39 0.003
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 39 0.003
At1g03110.1 68414.m00288 transducin family protein / WD-40 repea... 39 0.003
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 38 0.005
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 38 0.005
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 38 0.005
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 38 0.006
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 38 0.008
At1g64350.1 68414.m07292 transducin family protein / WD-40 repea... 38 0.008
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 37 0.011
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 37 0.011
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 37 0.011
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 37 0.011
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 37 0.014
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 37 0.014
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 36 0.019
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 36 0.019
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 36 0.019
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 36 0.025
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 29 0.030
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 36 0.033
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 36 0.033
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 36 0.033
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 36 0.033
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 36 0.033
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 36 0.033
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 36 0.033
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 36 0.033
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 35 0.043
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 35 0.043
At3g21060.1 68416.m02662 transducin family protein / WD-40 repea... 35 0.043
At1g12910.1 68414.m01499 flower pigmentation protein (AN11) cont... 35 0.043
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 35 0.057
At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pf... 34 0.075
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 34 0.075
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 34 0.075
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 34 0.099
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 34 0.099
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 34 0.099
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 34 0.099
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 34 0.099
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 33 0.13
At3g26640.1 68416.m03329 transducin family protein / WD-40 repea... 33 0.13
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 33 0.13
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 33 0.17
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 33 0.23
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 33 0.23
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 33 0.23
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 33 0.23
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 33 0.23
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 33 0.23
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 33 0.23
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 33 0.23
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 33 0.23
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 33 0.23
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 32 0.30
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 32 0.30
At3g20740.1 68416.m02624 fertilization-independent endosperm pro... 32 0.30
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 32 0.30
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 32 0.30
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 32 0.30
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 32 0.30
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel... 32 0.30
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 31 0.53
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 31 0.53
At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 ... 31 0.53
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 31 0.70
At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG... 31 0.70
At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG... 31 0.70
At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG... 31 0.70
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 31 0.70
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 31 0.70
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 31 0.70
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 31 0.70
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 31 0.70
At1g27470.1 68414.m03349 transducin-related / WD-40 repeat prote... 31 0.70
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 31 0.93
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 31 0.93
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 30 1.2
At4g07410.1 68417.m01136 transducin family protein / WD-40 repea... 30 1.2
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 30 1.2
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 30 1.2
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 30 1.2
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 30 1.2
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 30 1.2
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 30 1.2
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 30 1.2
At5g33280.1 68418.m03944 chloride channel-like (CLC) protein, pu... 30 1.6
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 30 1.6
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 30 1.6
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 30 1.6
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 30 1.6
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 30 1.6
At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pf... 30 1.6
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 30 1.6
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 30 1.6
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 29 2.1
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 29 2.1
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 29 2.1
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 29 2.1
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 29 2.1
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 29 2.1
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 29 2.1
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 29 2.8
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 29 2.8
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 29 2.8
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 29 2.8
At2g25420.1 68415.m03045 transducin family protein / WD-40 repea... 29 2.8
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 29 3.7
At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pf... 29 3.7
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 29 3.7
At4g04920.1 68417.m00715 expressed protein 29 3.7
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 29 3.7
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 28 4.9
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 28 4.9
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 28 4.9
At4g25250.1 68417.m03633 invertase/pectin methylesterase inhibit... 28 6.5
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 28 6.5
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 28 6.5
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 28 6.5
At3g13290.1 68416.m01673 transducin family protein / WD-40 repea... 28 6.5
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 28 6.5
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 28 6.5
At3g54320.1 68416.m06003 ovule development protein, putative sim... 27 8.6
At3g13300.2 68416.m01675 transducin family protein / WD-40 repea... 27 8.6
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea... 27 8.6
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 27 8.6
At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2 ... 27 8.6
At1g26330.1 68414.m03211 hypothetical protein 27 8.6
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 111 bits (267), Expect = 4e-25
Identities = 61/150 (40%), Positives = 88/150 (58%), Gaps = 11/150 (7%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKT---REGNVRVSRELPGHSGYLSCCRFL--DDNQILTSS 420
P+G VACGGLD++CSI+SL + ++G V VSR L GH GY+SCC+++ +D ++TSS
Sbjct: 117 PNGQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLITSS 176
Query: 421 GDMTCALWDIETGQQC----GQF-TGHTGDVMSLCWRRTSAR-SCPGRATPSAKLVGRAG 582
GD TC LWD+ TG + G+F +GHT DV+S+ ++ G +A+L
Sbjct: 177 GDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTARLWDTRA 236
Query: 583 TARAKQTXPGHESDIKRGHVLPVRVRVRDG 672
+RA +T GHE D+ P R G
Sbjct: 237 ASRAVRTFHGHEGDVNTVKFFPDGYRFGTG 266
Score = 81.0 bits (191), Expect = 7e-16
Identities = 36/79 (45%), Positives = 52/79 (65%)
Frame = +2
Query: 23 SLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTN 202
S AQ + + G + RTL+GH K+Y++ W + +VSASQDG+LIVW++ T+
Sbjct: 40 SAAQGRTRVS-FGATDLVCCRTLQGHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQ 98
Query: 203 KVHAIPLRSSWVMTCAYAP 259
K HAI L +WVMTCA++P
Sbjct: 99 KTHAIKLPCAWVMTCAFSP 117
Score = 37.1 bits (82), Expect = 0.011
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +1
Query: 238 DDLRLRPSGS---YVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDN-Q 405
D L + SGS + G D+ ++ TR + R R GH G ++ +F D +
Sbjct: 206 DVLSVSISGSNPNWFISGSCDSTARLWD--TRAAS-RAVRTFHGHEGDVNTVKFFPDGYR 262
Query: 406 ILTSSGDMTCALWDIETGQQCGQFTGHTGD 495
T S D TC L+DI TG Q + H GD
Sbjct: 263 FGTGSDDGTCRLYDIRTGHQLQVYQPH-GD 291
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 111 bits (267), Expect = 4e-25
Identities = 61/150 (40%), Positives = 88/150 (58%), Gaps = 11/150 (7%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKT---REGNVRVSRELPGHSGYLSCCRFL--DDNQILTSS 420
P+G VACGGLD++CSI+SL + ++G V VSR L GH GY+SCC+++ +D ++TSS
Sbjct: 55 PNGQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLITSS 114
Query: 421 GDMTCALWDIETGQQC----GQF-TGHTGDVMSLCWRRTSAR-SCPGRATPSAKLVGRAG 582
GD TC LWD+ TG + G+F +GHT DV+S+ ++ G +A+L
Sbjct: 115 GDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTARLWDTRA 174
Query: 583 TARAKQTXPGHESDIKRGHVLPVRVRVRDG 672
+RA +T GHE D+ P R G
Sbjct: 175 ASRAVRTFHGHEGDVNTVKFFPDGYRFGTG 204
Score = 67.7 bits (158), Expect = 7e-12
Identities = 26/51 (50%), Positives = 39/51 (76%)
Frame = +2
Query: 107 KIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
++Y++ W + +VSASQDG+LIVW++ T+ K HAI L +WVMTCA++P
Sbjct: 5 QVYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 55
Score = 37.1 bits (82), Expect = 0.011
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +1
Query: 238 DDLRLRPSGS---YVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDN-Q 405
D L + SGS + G D+ ++ TR + R R GH G ++ +F D +
Sbjct: 144 DVLSVSISGSNPNWFISGSCDSTARLWD--TRAAS-RAVRTFHGHEGDVNTVKFFPDGYR 200
Query: 406 ILTSSGDMTCALWDIETGQQCGQFTGHTGD 495
T S D TC L+DI TG Q + H GD
Sbjct: 201 FGTGSDDGTCRLYDIRTGHQLQVYQPH-GD 229
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 111 bits (267), Expect = 4e-25
Identities = 61/150 (40%), Positives = 88/150 (58%), Gaps = 11/150 (7%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKT---REGNVRVSRELPGHSGYLSCCRFL--DDNQILTSS 420
P+G VACGGLD++CSI+SL + ++G V VSR L GH GY+SCC+++ +D ++TSS
Sbjct: 117 PNGQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLITSS 176
Query: 421 GDMTCALWDIETGQQC----GQF-TGHTGDVMSLCWRRTSAR-SCPGRATPSAKLVGRAG 582
GD TC LWD+ TG + G+F +GHT DV+S+ ++ G +A+L
Sbjct: 177 GDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTARLWDTRA 236
Query: 583 TARAKQTXPGHESDIKRGHVLPVRVRVRDG 672
+RA +T GHE D+ P R G
Sbjct: 237 ASRAVRTFHGHEGDVNTVKFFPDGYRFGTG 266
Score = 81.0 bits (191), Expect = 7e-16
Identities = 36/79 (45%), Positives = 52/79 (65%)
Frame = +2
Query: 23 SLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTN 202
S AQ + + G + RTL+GH K+Y++ W + +VSASQDG+LIVW++ T+
Sbjct: 40 SAAQGRTRVS-FGATDLVCCRTLQGHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQ 98
Query: 203 KVHAIPLRSSWVMTCAYAP 259
K HAI L +WVMTCA++P
Sbjct: 99 KTHAIKLPCAWVMTCAFSP 117
Score = 37.1 bits (82), Expect = 0.011
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +1
Query: 238 DDLRLRPSGS---YVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDN-Q 405
D L + SGS + G D+ ++ TR + R R GH G ++ +F D +
Sbjct: 206 DVLSVSISGSNPNWFISGSCDSTARLWD--TRAAS-RAVRTFHGHEGDVNTVKFFPDGYR 262
Query: 406 ILTSSGDMTCALWDIETGQQCGQFTGHTGD 495
T S D TC L+DI TG Q + H GD
Sbjct: 263 FGTGSDDGTCRLYDIRTGHQLQVYQPH-GD 291
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 50.8 bits (116), Expect = 8e-07
Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Frame = +1
Query: 178 RVGQPHDQQGARDPAALVLGDDLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELP 357
++ +P ++ +R+ AL + D G Y+A GG+D I+ ++TRE +V+ P
Sbjct: 212 KLREPRNKNHSRESLALAVSSD------GRYLATGGVDRHVHIWDVRTRE-HVQA---FP 261
Query: 358 GHSGYLSC-CRFLDDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSL 507
GH +SC C +++ + S D T +W++E + GH G+++++
Sbjct: 262 GHRNTVSCLCFRYGTSELYSGSFDRTVKVWNVEDKAFITENHGHQGEILAI 312
Score = 32.7 bits (71), Expect = 0.23
Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 1/114 (0%)
Frame = +1
Query: 289 DNICSIYSLKTREG-NVRVSRELPGHSGYLSCCRFLDDNQILTSSGDMTCALWDIETGQQ 465
D I + +K RE N SRE L+ D + T D +WD+ T +
Sbjct: 203 DEILKSHGMKLREPRNKNHSRES------LALAVSSDGRYLATGGVDRHVHIWDVRTREH 256
Query: 466 CGQFTGHTGDVMSLCWRRTSARSCPGRATPSAKLVGRAGTARAKQTXPGHESDI 627
F GH V LC+R ++ G + K+ A + GH+ +I
Sbjct: 257 VQAFPGHRNTVSCLCFRYGTSELYSGSFDRTVKVWNVEDKAFITENH-GHQGEI 309
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 376 SCCRFLDDNQILTSSGDMTCALW 444
SCC F+ DN+ L+ S + T ALW
Sbjct: 351 SCC-FISDNEYLSGSDNGTVALW 372
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Frame = +2
Query: 2 GTRACDTSLAQATSNLEPIGRIQMRTRRT----LRGHLAKIYAMHWGSDSRNLVSASQDG 169
G A +S+ + S + I + +RT+ L+GH ++I + W SD+R L S D
Sbjct: 255 GALAWSSSVLSSGSRDKSILQRDIRTQEDHVSKLKGHKSEICGLKWSSDNRELASGGNDN 314
Query: 170 KLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
KL VW+ H+T V ++ V A++P
Sbjct: 315 KLFVWNQHSTQPVLRFCEHAAAVKAIAWSP 344
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG-DMTC 435
S S ++ G D ++T+E +V +L GH + ++ DN+ L S G D
Sbjct: 260 SSSVLSSGSRDKSILQRDIRTQEDHVS---KLKGHKSEICGLKWSSDNRELASGGNDNKL 316
Query: 436 ALWDIETGQQCGQFTGHTGDVMSLCW 513
+W+ + Q +F H V ++ W
Sbjct: 317 FVWNQHSTQPVLRFCEHAAAVKAIAW 342
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 48.4 bits (110), Expect = 4e-06
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDD-NQILTSSGDMT 432
P+ S + GG D + ++ TR G S L GH + ++ + N +LT+S D
Sbjct: 278 PTKSLLVSGGKDQLVKLWD--TRSGRELCS--LHGHKNIVLSVKWNQNGNWLLTASKDQI 333
Query: 433 CALWDIETGQQCGQFTGHTGDVMSLCW 513
L+DI T ++ F GHT DV SL W
Sbjct: 334 IKLYDIRTMKELQSFRGHTKDVTSLAW 360
Score = 31.9 bits (69), Expect = 0.40
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Frame = +1
Query: 358 GHSGYLSCCRFLDDNQILTSSG-DMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSARS 534
GH + + +L S G D LWD +G++ GH V+S+ W +
Sbjct: 266 GHGWDVKSVDWHPTKSLLVSGGKDQLVKLWDTRSGRELCSLHGHKNIVLSVKWNQNGNWL 325
Query: 535 CPGRATPSAKLVGRAGTARAKQTXPGHESDI 627
KL T + Q+ GH D+
Sbjct: 326 LTASKDQIIKLYD-IRTMKELQSFRGHTKDV 355
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAP 268
L+GH I +HW SD +VSAS D + WD T ++ + SS+V +C R P
Sbjct: 92 LKGHKNAILDLHWTSDGSQIVSASPDKTVRAWDVETGKQIKKMAEHSSFVNSCCPTRRGP 151
Query: 269 TSLV 280
++
Sbjct: 152 PLII 155
Score = 45.6 bits (103), Expect = 3e-05
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDD-NQILTSS 420
++ P+G+ +A G D ++ + G+ + L GH + + D +QI+++S
Sbjct: 59 MKFNPAGTLIASGSHDREIFLWRV---HGDCKNFMVLKGHKNAILDLHWTSDGSQIVSAS 115
Query: 421 GDMTCALWDIETGQQCGQFTGHTGDVMSLC-WRRTSARSCPGRATPSAKL 567
D T WD+ETG+Q + H+ V S C RR G +AKL
Sbjct: 116 PDKTVRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKL 165
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHS-----GYLSCCRFLDDNQI 408
+ L P GSY+ G+DN ++ ++ R + GH L C D ++
Sbjct: 228 MSLSPDGSYLLTNGMDNKLCVWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGTKV 287
Query: 409 LTSSGDMTCALWDIETGQQCGQFTGHTGDV 498
S D +WD + + + GHTG V
Sbjct: 288 TAGSSDRMVHIWDTTSRRTIYKLPGHTGSV 317
Score = 32.3 bits (70), Expect = 0.30
Identities = 11/48 (22%), Positives = 22/48 (45%)
Frame = +2
Query: 125 WGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAP 268
W D + + S D + +WD+ + ++ +P + V C + P P
Sbjct: 280 WSPDGTKVTAGSSDRMVHIWDTTSRRTIYKLPGHTGSVNECVFHPTEP 327
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTS-SGDMT 432
P G+ V G D + I+ +R R +LPGH+G ++ C F I+ S S D
Sbjct: 282 PDGTKVTAGSSDRMVHIWDTTSR----RTIYKLPGHTGSVNECVFHPTEPIIGSCSSDKN 337
Query: 433 CALWDI 450
L +I
Sbjct: 338 IYLGEI 343
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 187
TL GH I M D L++ D KL VWD
Sbjct: 217 TLEGHQDTITGMSLSPDGSYLLTNGMDNKLCVWD 250
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGDMTCA 438
S +Y+A G D+ Y L+ + V GH +S +FL +N++ ++S D T
Sbjct: 517 SSNYIAVGSADHHIHYYDLRNISQPLHV---FSGHKKAVSYVKFLSNNELASASTDSTLR 573
Query: 439 LWDIETGQQCGQFTGHTGD 495
LWD++ F GHT +
Sbjct: 574 LWDVKDNLPVRTFRGHTNE 592
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +1
Query: 397 DNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSA 528
D+ +LT+SGD T +WD+E + G GHTG V S+C T++
Sbjct: 140 DSCLLTASGDQTIKVWDVEENKCTGVLIGHTGTVKSMCSHPTNS 183
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 45.6 bits (103), Expect = 3e-05
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNV------RVSRELPGHSGYLSCCRFLDDNQILTS 417
PSG G+ N S + T GNV R + L GH+ +SC +F +D +L S
Sbjct: 2 PSGGNGTSNGVANANSTGNAGT-SGNVPIYKPYRHLKTLEGHTAAISCVKFSNDGNLLAS 60
Query: 418 SG-DMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSARSC 537
+ D T LW ++ GH+ + L W S +C
Sbjct: 61 ASVDKTMILWSATNYSLIHRYEGHSSGISDLAWSSDSHYTC 101
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +2
Query: 29 AQATSNLEPIGRIQM----RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 196
A +T N G + + R +TL GH A I + + +D L SAS D +I+W +
Sbjct: 15 ANSTGNAGTSGNVPIYKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATN 74
Query: 197 TNKVHAIPLRSSWVMTCAYA 256
+ +H SS + A++
Sbjct: 75 YSLIHRYEGHSSGISDLAWS 94
Score = 35.9 bits (79), Expect = 0.025
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLD-DNQILTSSGDMTC 435
S S+ C D+ C++ R + L GH+ ++ C F N I++ S D T
Sbjct: 95 SDSHYTCSASDD-CTLRIWDARSP-YECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETI 152
Query: 436 ALWDIETGQQCGQFTGHTGDVMSLCWRR 519
+W+++TG+ H+ + S+ + R
Sbjct: 153 RIWEVKTGKCVRMIKAHSMPISSVHFNR 180
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 190
R ++ H I ++H+ D +VSAS DG +WD+
Sbjct: 164 RMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWDA 199
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 95 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNK-VHAIPLRSSWVMTCAYAPRAPT 271
GH + I + W SDS SAS D L +WD+ + + + + +++V + P P+
Sbjct: 83 GHSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNP--PS 140
Query: 272 SLVV 283
+L+V
Sbjct: 141 NLIV 144
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTN-----KVHAIPLRS 229
+ LRGH ++ +++ S +VS S D + +W+ T K H++P+ S
Sbjct: 122 KVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVKTGKCVRMIKAHSMPISS 175
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Frame = +1
Query: 247 RLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCR----FLDDNQILT 414
+ P+G ++ LD+ + + T + + GH+ + C + I++
Sbjct: 220 KFSPNGKFILVATLDSTLKLSNYATG----KFLKVYTGHTNKVFCITSAFSVTNGKYIVS 275
Query: 415 SSGDMTCALWDIETGQQCGQFTGHTGDVMSL 507
S D LWD++ + GHT V+S+
Sbjct: 276 GSEDNCVYLWDLQARNILQRLEGHTDAVISV 306
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 45.2 bits (102), Expect = 4e-05
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Frame = +1
Query: 346 RELPGHSGYLSCCRFLDDNQ-ILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRT 522
+ L GH ++ F D + I ++S D + LW+ TGQ F GH G V + W
Sbjct: 354 KRLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRGHVGPVYQVSWSAD 413
Query: 523 SARSCPGRATPSAKLVGRAGTARAKQTXPGHESDI 627
S G + K + T + KQ PGH ++
Sbjct: 414 SRLLLSGSKDSTLK-IWEIRTKKLKQDLPGHADEV 447
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 92 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
RGH+ +Y + W +DSR L+S S+D L +W+ T +P + V ++P
Sbjct: 399 RGHVGPVYQVSWSADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSP 454
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +2
Query: 32 QATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVH 211
QA + P+ R +T+ GH + + + D + L S S D + +WD +T +
Sbjct: 90 QAVFRIRPVNRCS----QTIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLF 145
Query: 212 AIPLRSSWVMTCAYAP 259
+WV+T A++P
Sbjct: 146 TCKGHKNWVLTVAWSP 161
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 337 RVSRELPGHSGYLSCCRFLDDN-QILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
R S+ + GH+ + C F D Q+ + SGD T LWD+ T GH V+++ W
Sbjct: 100 RCSQTIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAW 159
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPL--RSSWVMTCAYAP 259
T +GH + + W D ++LVS S+ G++ W+ ++ PL W+ ++ P
Sbjct: 146 TCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNP-KKGELEGSPLTGHKKWITGISWEP 204
Query: 260 RAPTSLVVDWTTSAR 304
+S + TS++
Sbjct: 205 VHLSSPCRRFVTSSK 219
Score = 33.5 bits (73), Expect = 0.13
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTS-SGDMT 432
P G ++A D +++ T + V V R GH G + + D+++L S S D T
Sbjct: 370 PDGKWIASASFDKSVRLWNGITGQF-VTVFR---GHVGPVYQVSWSADSRLLLSGSKDST 425
Query: 433 CALWDIETGQQCGQFTGHTGDVMSLCW 513
+W+I T + GH +V ++ W
Sbjct: 426 LKIWEIRTKKLKQDLPGHADEVFAVDW 452
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 352 LPGHSGYLSCCRFLDDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSL 507
L GH+ ++C ++ D I T S D T +W+ G+ + GH + SL
Sbjct: 237 LSGHTLAVTCVKWGGDGIIYTGSQDCTIKMWETTQGKLIRELKGHGHWINSL 288
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG 423
L L P+ V GG D++C ++ ++T+ + V LP S S D Q++T S
Sbjct: 260 LALHPTLDVVLTGGRDSVCRVWDIRTKM-QIFV---LPHDSDVFSVLARPTDPQVITGSH 315
Query: 424 DMTCALWDIETGQQCGQFTGHTGDVMSL 507
D T WD+ G+ T H V ++
Sbjct: 316 DSTIKFWDLRYGKSMATITNHKKTVRAM 343
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 346 RELPGHSGYLSCCRFLDDNQ-ILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSL 507
R L GH G++ F N+ T S D T +WD+ TG TGH G V L
Sbjct: 164 RVLQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIGQVRGL 218
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAP 268
L GH +++ + W D+R L S D +L VW+ H+T V ++ V A++P
Sbjct: 331 LAGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYSEHTAAVKAIAWSPHVH 390
Query: 269 TSLVVDWTTSARFI 310
L T+ R I
Sbjct: 391 GLLASGGGTADRCI 404
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +1
Query: 265 SYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG-DMTCAL 441
S ++ G D ++ +E +V +L GH + ++ DN+ L S G D +
Sbjct: 305 SVLSSGSRDKSILQRDIRCQEDHVS---KLAGHKSEVCGLKWSYDNRELASGGNDNRLFV 361
Query: 442 WDIETGQQCGQFTGHTGDVMSLCW 513
W+ + Q +++ HT V ++ W
Sbjct: 362 WNQHSTQPVLKYSEHTAAVKAIAW 385
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 44.4 bits (100), Expect = 7e-05
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRF-LDDNQILTSSGDMTCA 438
G+ +A G D I++L N + L H G + ++ + +LT S D T
Sbjct: 336 GTLLATGSCDGQARIWTL-----NGELISTLSKHKGPIFSLKWNKKGDYLLTGSVDRTAV 390
Query: 439 LWDIETGQQCGQFTGHTGDVMSLCWRRTSARSCPGRATPSAKLVGRAGTARAKQTXPGHE 618
+WD++ + QF H+G + + WR S +T S + + G R +T GH+
Sbjct: 391 VWDVKAEEWKQQFEFHSGPTLDVDWRNNV--SFATSSTDSMIYLCKIGETRPAKTFTGHQ 448
Query: 619 SDI 627
++
Sbjct: 449 GEV 451
Score = 35.5 bits (78), Expect = 0.033
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG 423
L+ G Y+ G +D ++ +K E ++ HSG + ++ TSS
Sbjct: 371 LKWNKKGDYLLTGSVDRTAVVWDVKAEEWK----QQFEFHSGPTLDVDWRNNVSFATSST 426
Query: 424 DMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSA--RSCPGRAT 552
D L I + FTGH G+V + W T + SC +T
Sbjct: 427 DSMIYLCKIGETRPAKTFTGHQGEVNCVKWDPTGSLLASCSDDST 471
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = +2
Query: 68 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTC 247
+ R +T GH ++ + W L S S D +W+ + VH + + + T
Sbjct: 437 ETRPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQSTFVHDLREHTKEIYTI 496
Query: 248 AYAPRAP 268
++P P
Sbjct: 497 RWSPTGP 503
Score = 33.9 bits (74), Expect = 0.099
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG 423
L P+G Y+A G LD I+S+K EG ++ + G+ G C + N+I
Sbjct: 547 LAFSPNGEYIASGSLDKSIHIWSIK--EG--KIVKTYTGNGGIFEVCWNKEGNKIAACFA 602
Query: 424 DMTCALWD 447
D + + D
Sbjct: 603 DNSVCVLD 610
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 406 ILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
+ ++S D T LWD E G+ F GH V SL +
Sbjct: 514 LASASFDSTVKLWDAELGKMLCSFNGHREPVYSLAF 549
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 346 RELPGHSGYLSCCRFLDDNQILTS-SGDMTCALWDIETGQQCGQFTGHTGDVMSL 507
R L GH+ + C + +L S SGD T +W I G TG + + L
Sbjct: 259 RILEGHTSEVCACAWSPSASLLASGSGDATARIWSIPEGSFKAVHTGRNINALIL 313
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 187
TL H I+++ W L++ S D +VWD
Sbjct: 360 TLSKHKGPIFSLKWNKKGDYLLTGSVDRTAVVWD 393
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 406 ILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRR 519
I + S D + +W I+ G+ +TG+ G + +CW +
Sbjct: 556 IASGSLDKSIHIWSIKEGKIVKTYTGN-GGIFEVCWNK 592
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/83 (25%), Positives = 39/83 (46%)
Frame = +2
Query: 62 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVM 241
R+Q L GH +++ + W D R L S D +L+VW++H+ + + ++ V
Sbjct: 285 RVQSDFVSKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVWNNHSQQPILKLTEHTAAVK 344
Query: 242 TCAYAPRAPTSLVVDWTTSARFI 310
++P + L T+ R I
Sbjct: 345 AITWSPHQSSLLASGGGTADRCI 367
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 349 ELPGHSGYLSCCRFLDDNQILTSSG-DMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
+L GH + ++ D++ L S G D +W+ + Q + T HT V ++ W
Sbjct: 293 KLVGHKSEVCGLKWSHDDRELASGGNDNQLLVWNNHSQQPILKLTEHTAAVKAITW 348
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 44.0 bits (99), Expect = 9e-05
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG 423
+ P G + A G LD I+ ++ ++G + + GH+ ++ RF D + + S G
Sbjct: 200 VNFHPFGEFFASGSLDTNLKIWDIR-KKGCIHTYK---GHTRGVNVLRFTPDGRWIVSGG 255
Query: 424 -DMTCALWDIETGQQCGQFTGHTGDVMSL 507
D +WD+ G+ +F H G + SL
Sbjct: 256 EDNVVKVWDLTAGKLLHEFKSHEGKIQSL 284
Score = 41.5 bits (93), Expect = 5e-04
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQIL-TSS 420
LR P G ++ GG DN+ ++ L ++ E H G + F +L T S
Sbjct: 242 LRFTPDGRWIVSGGEDNVVKVWDLTAG----KLLHEFKSHEGKIQSLDFHPHEFLLATGS 297
Query: 421 GDMTCALWDIETGQQCGQFTGHTGDVMSL 507
D T WD+ET + G T V L
Sbjct: 298 ADKTVKFWDLETFELIGSGGTETTGVRCL 326
Score = 31.1 bits (67), Expect = 0.70
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +1
Query: 253 RPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGDM- 429
R S + GG D+ +++++ G L GHS + F D ++ L ++G
Sbjct: 119 RKSSRVLVTGGEDHKVNLWAI----GKPNAILSLYGHSSGIDSVTF-DASEGLVAAGAAS 173
Query: 430 -TCALWDIETGQQCGQFTGHTGDVMSL 507
T LWD+E + TGH + +S+
Sbjct: 174 GTIKLWDLEEAKVVRTLTGHRSNCVSV 200
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/58 (22%), Positives = 24/58 (41%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
T +GH + + + D R +VS +D + VWD +H + + + P
Sbjct: 231 TYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHP 288
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHW-GSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
R GH + AM W SDS L++ ++D + I WD++T V +P ++W + P
Sbjct: 257 REFTGHQRGVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAEIVAELPAGNNWNFDVHWYP 316
Query: 260 RAP 268
+ P
Sbjct: 317 KIP 319
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHW-GSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
R GH + AM W SDS L++ ++D + I WD++T V +P ++W + P
Sbjct: 257 REFTGHQRGVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAEIVAELPAGNNWNFDVHWYP 316
Query: 260 RAP 268
+ P
Sbjct: 317 KIP 319
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 346 RELPGHSGYLSCCRFLDDNQI-LTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
R L GHS ++ D Q L+ S D LWD+ TG+ +F GHT DV+S+ +
Sbjct: 57 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLATGETTRRFVGHTKDVLSVAF 113
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 331 NVRVSRELPGHSGYLSCCRFLDDNQILTSSG-DMTCALWDIETGQQCGQFTGHTGDVM-S 504
N ++ L GHSGYL+ D + S G D LWD+ G++ ++ G ++ S
Sbjct: 182 NCKLRNSLVGHSGYLNTVAVSPDGSLCASGGKDGVILLWDLAEGKKL--YSLEAGSIIHS 239
Query: 505 LCW 513
LC+
Sbjct: 240 LCF 242
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = +2
Query: 77 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNK--VHAIPLRSSWVMTCA 250
T R GH + ++ + +D+R +VSAS+D + +W++ K + WV
Sbjct: 97 TTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEGDGHKEWVSCVR 156
Query: 251 YAPR--APTSLVVDWTTSAR 304
++P PT + W + +
Sbjct: 157 FSPNTLVPTIVSASWDKTVK 176
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 358 GHSGYLSCCRFLDDN---QILTSSGDMTCALWDIETGQQCGQFTGHTG 492
GH ++SC RF + I+++S D T +W+++ + GH+G
Sbjct: 147 GHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRNSLVGHSG 194
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 80 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYA 256
+R L GH + + SD + +S S DG+L +WD T + V++ A++
Sbjct: 56 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLATGETTRRFVGHTKDVLSVAFS 114
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 44.0 bits (99), Expect = 9e-05
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQ---ILTSSGD 426
P G + +I IYS E ++R E+ H+G ++ F NQ ++T D
Sbjct: 429 PDGGLLGVAYSKHIVHIYSYHGGE-DLRNHLEIDAHAGNVNDLAFSQPNQQLCVVTCGED 487
Query: 427 MTCALWDIETGQQCGQFTGHTGDVMSLC 510
T +WD TG + F GH V S+C
Sbjct: 488 KTIKVWDAVTGNKLHTFEGHEAPVYSVC 515
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 44.0 bits (99), Expect = 9e-05
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQ---ILTSSGD 426
P G + +I IYS E ++R E+ H+G ++ F NQ ++T D
Sbjct: 429 PDGGLLGVAYSKHIVHIYSYHGGE-DLRNHLEIDAHAGNVNDLAFSQPNQQLCVVTCGED 487
Query: 427 MTCALWDIETGQQCGQFTGHTGDVMSLC 510
T +WD TG + F GH V S+C
Sbjct: 488 KTIKVWDAVTGNKLHTFEGHEAPVYSVC 515
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 346 RELPGHSGYLSCCRFLDDNQI-LTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
R + GHS ++ D Q L+ S D LWD+ TG+ +F GHT DV+S+ +
Sbjct: 57 RRMTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGESTRRFVGHTKDVLSVAF 113
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 331 NVRVSRELPGHSGYLSCCRFLDDNQILTSSG-DMTCALWDIETGQQCGQFTGHTGDVM-S 504
N ++ L GHSGYL+ D + S G D LWD+ G++ ++ G ++ S
Sbjct: 182 NCKLRNTLAGHSGYLNTVAVSPDGSLCASGGKDGVILLWDLAEGKKL--YSLEAGSIIHS 239
Query: 505 LCW 513
LC+
Sbjct: 240 LCF 242
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +2
Query: 77 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNK--VHAIPLRSSWVMTCA 250
TRR + GH + ++ + +D+R +VSAS+D + +W++ K + WV
Sbjct: 98 TRRFV-GHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEADGHKEWVSCVR 156
Query: 251 YAPR--APTSLVVDWTTSAR 304
++P PT + W + +
Sbjct: 157 FSPNTLVPTIVSASWDKTVK 176
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 349 ELPGHSGYLSCCRFLDDN---QILTSSGDMTCALWDIETGQQCGQFTGHTG 492
E GH ++SC RF + I+++S D T +W+++ + GH+G
Sbjct: 144 EADGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRNTLAGHSG 194
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 217
+ R TL GH + + D S +DG +++WD K++++
Sbjct: 184 KLRNTLAGHSGYLNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSL 231
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 80 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYA 256
+R + GH + + SD + +S S DG+L +WD T + V++ A++
Sbjct: 56 QRRMTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGESTRRFVGHTKDVLSVAFS 114
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG-DMT 432
P G + A G LD I+ ++ ++G + + GH+ ++ RF D + + S G D
Sbjct: 111 PFGEFFASGSLDTNLKIWDIR-KKGCIHTYK---GHTRGVNVLRFTPDGRWVVSGGEDNI 166
Query: 433 CALWDIETGQQCGQFTGHTGDVMSL 507
+WD+ G+ +F H G + SL
Sbjct: 167 VKVWDLTAGKLLTEFKSHEGQIQSL 191
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQIL-TSS 420
LR P G +V GG DNI ++ L ++ E H G + F +L T S
Sbjct: 149 LRFTPDGRWVVSGGEDNIVKVWDLTAG----KLLTEFKSHEGQIQSLDFHPHEFLLATGS 204
Query: 421 GDMTCALWDIETGQQCGQFTGHTGDVMSL 507
D T WD+ET + G T V L
Sbjct: 205 ADRTVKFWDLETFELIGSGGPETAGVRCL 233
Score = 33.5 bits (73), Expect = 0.13
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +1
Query: 253 RPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGDM- 429
R S + GG D+ +++++ G L GHS + F D +++L ++G
Sbjct: 26 RKSSRVLVTGGEDHKVNLWAI----GKPNAILSLYGHSSGIDSVTF-DASEVLVAAGAAS 80
Query: 430 -TCALWDIETGQQCGQFTGHTGDVMSL 507
T LWD+E + TGH + +S+
Sbjct: 81 GTIKLWDLEEAKIVRTLTGHRSNCISV 107
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG-DMT 432
P G + A G LD I+ ++ ++G + + GH+ ++ RF D + + S G D
Sbjct: 111 PFGEFFASGSLDTNLKIWDIR-KKGCIHTYK---GHTRGVNVLRFTPDGRWVVSGGEDNI 166
Query: 433 CALWDIETGQQCGQFTGHTGDVMSL 507
+WD+ G+ +F H G + SL
Sbjct: 167 VKVWDLTAGKLLTEFKSHEGQIQSL 191
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQIL-TSS 420
LR P G +V GG DNI ++ L ++ E H G + F +L T S
Sbjct: 149 LRFTPDGRWVVSGGEDNIVKVWDLTAG----KLLTEFKSHEGQIQSLDFHPHEFLLATGS 204
Query: 421 GDMTCALWDIETGQQCGQFTGHTGDVMSL 507
D T WD+ET + G T V L
Sbjct: 205 ADRTVKFWDLETFELIGSGGPETAGVRCL 233
Score = 33.5 bits (73), Expect = 0.13
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +1
Query: 253 RPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGDM- 429
R S + GG D+ +++++ G L GHS + F D +++L ++G
Sbjct: 26 RKSSRVLVTGGEDHKVNLWAI----GKPNAILSLYGHSSGIDSVTF-DASEVLVAAGAAS 80
Query: 430 -TCALWDIETGQQCGQFTGHTGDVMSL 507
T LWD+E + TGH + +S+
Sbjct: 81 GTIKLWDLEEAKIVRTLTGHRSNCISV 107
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +1
Query: 250 LRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQIL-TSSGD 426
L P+ Y+A D I+++ ++ + L GH ++ C F D + L T+S D
Sbjct: 219 LSPANKYLATASSDKTVKIWNVD----GFKLEKVLTGHQRWVWDCVFSVDGEFLVTASSD 274
Query: 427 MTCALWDIETGQQCGQFTGH 486
MT LW + G++ + GH
Sbjct: 275 MTARLWSMPAGKEVKVYQGH 294
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 349 ELPGHSGYLSCCRFLDDNQIL-TSSGDMTCALWDIETGQQCGQFTGH 486
+L H+G++ C N+ L T+S D T +W+++ + TGH
Sbjct: 206 KLQAHNGHILKCLLSPANKYLATASSDKTVKIWNVDGFKLEKVLTGH 252
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 2/126 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDD-NQILTSSGDMT 432
P +V G D +Y+ T + V+V HS Y+ C +L+SS DM
Sbjct: 67 PRKQWVVAGADDMYIRVYNYNTMD-KVKV---FEAHSDYIRCVAVHPTLPYVLSSSDDML 122
Query: 433 CALWDIETGQQCGQ-FTGHTGDVMSLCWRRTSARSCPGRATPSAKLVGRAGTARAKQTXP 609
LWD E G C Q F GH+ VM + + + + + G+ T
Sbjct: 123 IKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD 182
Query: 610 GHESDI 627
H+ +
Sbjct: 183 AHQKGV 188
Score = 35.1 bits (77), Expect = 0.043
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +1
Query: 274 ACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFL---DDNQILTSSGDMTCALW 444
A LD I++L + + N L H ++C + D ++T S D T +W
Sbjct: 159 ASASLDRTIKIWNLGSPDPNFT----LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214
Query: 445 DIETGQQCGQFTGHTGDVMSLCW 513
D +T GHT +V ++C+
Sbjct: 215 DYQTKSCVQTLDGHTHNVSAVCF 237
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 2/126 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDD-NQILTSSGDMT 432
P +V G D +Y+ T + V+V HS Y+ C +L+SS DM
Sbjct: 67 PRKQWVVAGADDMYIRVYNYNTMD-KVKV---FEAHSDYIRCVAVHPTLPYVLSSSDDML 122
Query: 433 CALWDIETGQQCGQ-FTGHTGDVMSLCWRRTSARSCPGRATPSAKLVGRAGTARAKQTXP 609
LWD E G C Q F GH+ VM + + + + + G+ T
Sbjct: 123 IKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD 182
Query: 610 GHESDI 627
H+ +
Sbjct: 183 AHQKGV 188
Score = 35.1 bits (77), Expect = 0.043
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +1
Query: 274 ACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFL---DDNQILTSSGDMTCALW 444
A LD I++L + + N L H ++C + D ++T S D T +W
Sbjct: 159 ASASLDRTIKIWNLGSPDPNFT----LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214
Query: 445 DIETGQQCGQFTGHTGDVMSLCW 513
D +T GHT +V ++C+
Sbjct: 215 DYQTKSCVQTLDGHTHNVSAVCF 237
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 2/126 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDD-NQILTSSGDMT 432
P +V G D +Y+ T + V+V HS Y+ C +L+SS DM
Sbjct: 67 PRKQWVVAGADDMYIRVYNYNTMD-KVKV---FEAHSDYIRCVAVHPTLPYVLSSSDDML 122
Query: 433 CALWDIETGQQCGQ-FTGHTGDVMSLCWRRTSARSCPGRATPSAKLVGRAGTARAKQTXP 609
LWD E G C Q F GH+ VM + + + + + G+ T
Sbjct: 123 IKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD 182
Query: 610 GHESDI 627
H+ +
Sbjct: 183 AHQKGV 188
Score = 35.1 bits (77), Expect = 0.043
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +1
Query: 274 ACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFL---DDNQILTSSGDMTCALW 444
A LD I++L + + N L H ++C + D ++T S D T +W
Sbjct: 159 ASASLDRTIKIWNLGSPDPNFT----LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214
Query: 445 DIETGQQCGQFTGHTGDVMSLCW 513
D +T GHT +V ++C+
Sbjct: 215 DYQTKSCVQTLDGHTHNVSAVCF 237
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 41.5 bits (93), Expect = 5e-04
Identities = 35/127 (27%), Positives = 50/127 (39%)
Frame = +1
Query: 241 DLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSS 420
D + P G Y A D I+S+ ++ R + GH + + N I T S
Sbjct: 465 DAQFSPFGHYFASCSHDRTARIWSMD----RIQPLRIMAGHLSDVDW--HPNCNYIATGS 518
Query: 421 GDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSARSCPGRATPSAKLVGRAGTARAKQ 600
D T LWD++TG+ F GH V+SL G + ++ TAR
Sbjct: 519 SDKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTI-MMWDLSTARCIT 577
Query: 601 TXPGHES 621
GH S
Sbjct: 578 PLMGHNS 584
Score = 38.3 bits (85), Expect = 0.005
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Frame = +1
Query: 241 DLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGH-SGYLSCCRFLDDNQILTS 417
D+ P+ +Y+A G D ++ ++T E VR+ GH S LS D + +
Sbjct: 504 DVDWHPNCNYIATGSSDKTVRLWDVQTGEC-VRI---FIGHRSMVLSLAMSPDGRYMASG 559
Query: 418 SGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSARSCPGRATPSAKL 567
D T +WD+ T + GH V SL + + G A + KL
Sbjct: 560 DEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKL 609
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYA 256
R GH + + ++ D R + S +DG +++WD T + + +S V + +Y+
Sbjct: 535 RIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYS 592
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 41.5 bits (93), Expect = 5e-04
Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 2/130 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVS-RELPGHSGYLSCCRFLDDNQ-ILTS 417
++ G +A D Y++ T + +E GH +S F D + I+++
Sbjct: 30 VKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAFSSDARFIVSA 89
Query: 418 SGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSARSCPGRATPSAKLVGRAGTARAK 597
S D T LWD+ETG GHT + + S G + + + T +
Sbjct: 90 SDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVR-IWDVTTGKCL 148
Query: 598 QTXPGHESDI 627
+ P H +
Sbjct: 149 KVLPAHSDPV 158
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 346 RELPGHSGYLSCCRFL-DDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRR 519
+ L GH+ Y C F N I++ S D T +WD+ TG+ H+ V ++ + R
Sbjct: 107 KTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNR 165
Score = 34.7 bits (76), Expect = 0.057
Identities = 18/93 (19%), Positives = 42/93 (45%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG 423
+R P+G ++ G LDN ++++ + + + + S + +I++ S
Sbjct: 204 VRFSPNGKFILVGTLDNTLRLWNISSAKFLKTYTGHVNAQYCISSAFSVTNGKRIVSGSE 263
Query: 424 DMTCALWDIETGQQCGQFTGHTGDVMSLCWRRT 522
D +W++ + + + GHT VM++ T
Sbjct: 264 DNCVHMWELNSKKLLQKLEGHTETVMNVACHPT 296
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 95 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRA 265
GH I + + SD+R +VSAS D L +WD T + + + +++ + P++
Sbjct: 69 GHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQS 125
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRS 229
+TL GH + +++ S +VS S D + +WD T + +P S
Sbjct: 107 KTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHS 155
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQ-ILTSSGDMTCA 438
GS + D +C I+ T G+ V + + +S RF + + IL + D T
Sbjct: 167 GSLIVSSSYDGLCRIWDSGT--GHC-VKTLIDDENPPVSFVRFSPNGKFILVGTLDNTLR 223
Query: 439 LWDIETGQQCGQFTGH 486
LW+I + + +TGH
Sbjct: 224 LWNISSAKFLKTYTGH 239
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/86 (24%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Frame = +2
Query: 17 DTSLAQATSNLEPIGRI-QMRTRRTL---RGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 184
D +LA A+ L+ + R+ +RT R++ +GH+ ++++++ + +L S +D + +W
Sbjct: 392 DGALA-ASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIW 450
Query: 185 DSHTTNKVHAIPLRSSWVMTCAYAPR 262
D ++ IP ++ V Y P+
Sbjct: 451 DLRMRKSLYIIPAHANLVSQVKYEPQ 476
Score = 36.7 bits (81), Expect = 0.014
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG-DMT 432
PSG Y+ D ++ + T G + +E GHS + F D + S G D
Sbjct: 349 PSGKYLGTTSYDKTWRLWDINT--GAELLLQE--GHSRSVYGIAFQQDGALAASCGLDSL 404
Query: 433 CALWDIETGQQCGQFTGHTGDVMSL 507
+WD+ TG+ F GH V S+
Sbjct: 405 ARVWDLRTGRSILVFQGHIKPVFSV 429
Score = 36.3 bits (80), Expect = 0.019
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRF--LDDNQILTSSGDM 429
P+G ++A GG DN C I+ L+ R+ ++ + +P H+ +S ++ + + T+S DM
Sbjct: 433 PNGYHLASGGEDNQCRIWDLRMRK-SLYI---IPAHANLVSQVKYEPQEGYFLATASYDM 488
Query: 430 TCALWDIETGQQCGQFTGHTGDVMSL 507
+W GH V SL
Sbjct: 489 KVNIWSGRDFSLVKSLAGHESKVASL 514
Score = 32.3 bits (70), Expect = 0.30
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 1/99 (1%)
Frame = +1
Query: 358 GHSGYLSCCRFLDDNQIL-TSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSARS 534
GH L+ F + L T+S D T LWDI TG + GH+ V + +++ A
Sbjct: 337 GHLDRLARVAFHPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGA-- 394
Query: 535 CPGRATPSAKLVGRAGTARAKQTXPGHESDIKRGHVLPV 651
A G AR G + +GH+ PV
Sbjct: 395 -------LAASCGLDSLARVWDLRTGRSILVFQGHIKPV 426
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 40.7 bits (91), Expect = 9e-04
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +1
Query: 361 HSGYLSCCRFLDDN-QILTSSGDMTCALWDIETGQQCGQFT---GHTGDVMSLCWRRTSA 528
HS +++C R+ D + +T S D ++D +TG + G+ GH G + ++ W S
Sbjct: 50 HSNFVNCIRYSPDGTKFITVSSDKKGMIYDGKTGDKVGELASEDGHKGSIYAVSWSPDSK 109
Query: 529 RSCPGRATPSAKL 567
R A SAK+
Sbjct: 110 RVLTVSADKSAKV 122
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +1
Query: 238 DDLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTS 417
+ L P+ VA G +D +Y + + +R H G ++ F+DD + +S
Sbjct: 403 NSLAWSPNNKMVATGSIDTCVIVYEVDKPASSRITARN--AHLGGVNAVAFIDDCTVASS 460
Query: 418 SGDMTCALWDIE 453
D + LW IE
Sbjct: 461 GEDASVRLWHIE 472
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 95 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 187
GH IYA+ W DS+ +++ S D VW+
Sbjct: 94 GHKGSIYAVSWSPDSKRVLTVSADKSAKVWE 124
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQ-ILTSS 420
+R P G+ D IY KT + ++ E GH G + + D++ +LT S
Sbjct: 57 IRYSPDGTKFITVSSDKKGMIYDGKTGDKVGELASE-DGHKGSIYAVSWSPDSKRVLTVS 115
Query: 421 GDMTCALWDI 450
D + +W++
Sbjct: 116 ADKSAKVWEV 125
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 40.7 bits (91), Expect = 9e-04
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQIL-TSS 420
+R P G +V GGLDN+ ++ L ++ E H G + F +L T S
Sbjct: 148 IRFTPDGRWVVSGGLDNVVKVWDLTAG----KLLHEFKFHEGPIRSLDFHPLEFLLATGS 203
Query: 421 GDMTCALWDIETGQQCGQFTGHTGDVMSL 507
D T WD+ET + G V S+
Sbjct: 204 ADRTVKFWDLETFELIGSTRPEATGVRSI 232
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 352 LPGHSGYLSCCRFLDDNQILTSSGDMT--CALWDIETGQQCGQFTGH 486
L GH+ + F D ++L +G + LWD+E + FTGH
Sbjct: 54 LCGHTSAVDSVAF-DSAEVLVLAGASSGVIKLWDVEEAKMVRAFTGH 99
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHW-GSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
RT GH + AM W SDS L++ +D + I W++ T V +P +W + P
Sbjct: 246 RTFVGHQRGVIAMEWCPSDSLYLLTCGKDNRTICWNTKTGKIVAELPTGQNWNFDVHWYP 305
Query: 260 RAP 268
+ P
Sbjct: 306 KMP 308
Score = 30.7 bits (66), Expect = 0.93
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYS-LKTREGNVRVSRELPGHSGYLSCCRF--LDDNQILTSSGDM 429
S +A G +D +++ + + G + R+L H G + F NQ+ + + D
Sbjct: 79 SDGLIAGGLVDGNIGLWNPISSESGEIAHVRDLSKHKGPVRGLEFNVKSPNQLASGADDG 138
Query: 430 TCALWDIETGQQCGQFTGHTG-----DVMSLCWRR 519
T +WD+ + + TG ++ SL W +
Sbjct: 139 TVCIWDLANPSKPSHYLKGTGSYMQSEISSLSWNK 173
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 40.7 bits (91), Expect = 9e-04
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 346 RELPGHSGYLSCCRFLDDNQI-LTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
R L GHS ++ D Q L+ S D LWD+ G +F GHT DV+S+ +
Sbjct: 57 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF 113
Score = 33.1 bits (72), Expect = 0.17
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +1
Query: 202 QGARDPAALVLGDDLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSC 381
+G RD + V L+P+ + D +++L N ++ L GH+GY+S
Sbjct: 147 EGHRDWVSCVRFSPNTLQPT---IVSASWDKTVKVWNLS----NCKLRSTLAGHTGYVST 199
Query: 382 CRFLDDNQILTSSG-DMTCALWDIETGQQ 465
D + S G D LWD+ G++
Sbjct: 200 VAVSPDGSLCASGGKDGVVLLWDLAEGKK 228
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 358 GHSGYLSCCRFLDDN---QILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSL 507
GH ++SC RF + I+++S D T +W++ + GHTG V ++
Sbjct: 148 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV 200
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRS 229
+ R TL GH + + D S +DG +++WD K++++ S
Sbjct: 185 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS 236
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +2
Query: 77 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 190
TRR + GH + ++ + D+R +VSAS+D + +W++
Sbjct: 98 TRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 134
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 40.3 bits (90), Expect = 0.001
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQ-ILTSS 420
LR GS +A G DN ++ + G R L GH ++ FLD + +++SS
Sbjct: 112 LRYNKVGSMLASGSKDNDIILWDVVGESGLFR----LRGHRDQVTDLVFLDGGKKLVSSS 167
Query: 421 GDMTCALWDIETGQQCGQF-TGHTGDVMSL 507
D +WD+ET Q C Q +GH +V S+
Sbjct: 168 KDKFLRVWDLET-QHCMQIVSGHHSEVWSV 196
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 289 DNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGDMTCALWDIETG 459
+N YSLK+ E V+ E GH + +DN +L S+ +W+ TG
Sbjct: 381 NNSLEFYSLKSSENAKTVTIEHQGHRSDVRSVTLSEDNTLLMSTSHSEVKIWNPSTG 437
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 196
LRGH ++ + + + LVS+S+D L VWD T
Sbjct: 144 LRGHRDQVTDLVFLDGGKKLVSSSKDKFLRVWDLET 179
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 352 LPGHSGYLSCCRFLDDNQILTSSG-DMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSA 528
+ GH L+ R+ + +L S D T LW + G++ G + GH G V R S+
Sbjct: 6 MKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSS 65
Query: 529 RSCPGRATPSAKL 567
R G A +AKL
Sbjct: 66 RLITGSADQTAKL 78
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYL-SCCRFLDDNQILTSSGDMT 432
P + GG D + I+ +T + ++ S E GH + S C+ DD+ LT S D T
Sbjct: 158 PLNQTIVSGGEDKVIRIWDAETGK-LLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKT 216
Query: 433 CALWDIET 456
LWD+ T
Sbjct: 217 AKLWDMRT 224
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 400 NQILTSSG-DMTCALWDIETGQ---QCGQFTGHTGDVMSLCWRRTSARSCPGRATPSAKL 567
NQ + S G D +WD ETG+ Q + GH D+ SLC + G +AKL
Sbjct: 160 NQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKL 219
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 352 LPGHSGYLSCCRFLDDNQILTSSG-DMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSA 528
+ GH L+ R+ + +L S D T LW + G++ G + GH G V R S+
Sbjct: 6 MKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSS 65
Query: 529 RSCPGRATPSAKL 567
R G A +AKL
Sbjct: 66 RLITGSADQTAKL 78
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYL-SCCRFLDDNQILTSSGDMT 432
P + GG D + I+ +T + ++ S E GH + S C+ DD+ LT S D T
Sbjct: 158 PLNQTIVSGGEDKVIRIWDAETGK-LLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKT 216
Query: 433 CALWDIET 456
LWD+ T
Sbjct: 217 AKLWDMRT 224
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 400 NQILTSSG-DMTCALWDIETGQ---QCGQFTGHTGDVMSLCWRRTSARSCPGRATPSAKL 567
NQ + S G D +WD ETG+ Q + GH D+ SLC + G +AKL
Sbjct: 160 NQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKL 219
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 352 LPGHSGYLSCCRFLDDNQILTSSG-DMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSA 528
+ GH L+ R+ + +L S D T LW + G++ G + GH G V R S+
Sbjct: 6 MKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSS 65
Query: 529 RSCPGRATPSAKL 567
R G A +AKL
Sbjct: 66 RLITGSADQTAKL 78
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYL-SCCRFLDDNQILTSSGDMT 432
P + GG D + I+ +T + ++ S E GH + S C+ DD+ LT S D T
Sbjct: 158 PLNQTIVSGGEDKVIRIWDAETGK-LLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKT 216
Query: 433 CALWDIET 456
LWD+ T
Sbjct: 217 AKLWDMRT 224
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 400 NQILTSSG-DMTCALWDIETGQ---QCGQFTGHTGDVMSLCWRRTSARSCPGRATPSAKL 567
NQ + S G D +WD ETG+ Q + GH D+ SLC + G +AKL
Sbjct: 160 NQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKL 219
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
Frame = +1
Query: 268 YVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDD-NQILTSSGDMTCALW 444
+V G D +Y+ T + V+V HS Y+ C +L+SS DM LW
Sbjct: 71 WVVAGADDMYIRVYNYNTMD-KVKV---FEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
Query: 445 DIETGQQCGQ-FTGHTGDVMSLCWRRTSARSCPGRATPSAKLVGRAGTARAKQTXPGHES 621
D E G C Q F GH+ VM + + + + + G+ T H+
Sbjct: 127 DWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK 186
Query: 622 DI 627
+
Sbjct: 187 GV 188
Score = 35.1 bits (77), Expect = 0.043
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +1
Query: 274 ACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFL---DDNQILTSSGDMTCALW 444
A LD I++L + + N L H ++C + D ++T S D T +W
Sbjct: 159 ASASLDRTIKIWNLGSPDPNFT----LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214
Query: 445 DIETGQQCGQFTGHTGDVMSLCW 513
D +T GHT +V ++C+
Sbjct: 215 DYQTKSCVQTLEGHTHNVSAVCF 237
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQ---ILTSSGD 426
P GS +I +YS E ++R E+ H G ++ F N+ ++T D
Sbjct: 427 PDGSLFGVAYSRHIVQLYSYHGGE-DMRQHLEIDAHVGGVNDISFSTPNKQLCVITCGDD 485
Query: 427 MTCALWDIETGQQCGQFTGHTGDVMSLC 510
T +WD TG + F GH V S+C
Sbjct: 486 KTIKVWDAATGVKRHTFEGHEAPVYSVC 513
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQ---ILTSSGD 426
P GS +I +YS E ++R E+ H G ++ F N+ ++T D
Sbjct: 427 PDGSLFGVAYSRHIVQLYSYHGGE-DMRQHLEIDAHVGGVNDISFSTPNKQLCVITCGDD 485
Query: 427 MTCALWDIETGQQCGQFTGHTGDVMSLC 510
T +WD TG + F GH V S+C
Sbjct: 486 KTIKVWDAATGVKRHTFEGHEAPVYSVC 513
>At5g23730.1 68418.m02782 transducin family protein / WD-40 repeat
family protein contains similarity to photomorphogenesis
repressor protein; contains Pfam PF00400: WD domain,
G-beta repeat (5 copies)
Length = 243
Score = 39.9 bits (89), Expect = 0.002
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Frame = +1
Query: 256 PSGS-YVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGDMT 432
PSG VA G D +Y ++ V + L GH+ +S RFLD ++T+ D
Sbjct: 79 PSGGPAVAVGCADRKGYVYDIRKL---VDPALTLQGHTKTVSYVRFLDGGTVVTAGTDGC 135
Query: 433 CALWDIETGQQCGQFTGHTGD---VMSLCWRRTSARSC 537
LW +E G+ + GH + V WR + C
Sbjct: 136 LKLWSVEDGRVIRTYEGHVNNRNFVGLSVWRNGALFGC 173
>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to photomorphogenesis repressor PnCOP1
(GI:11127996) [Ipomoea nil]
Length = 385
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGDMTCAL 441
GS +A G D +Y ++ + V L GH+ ++ RF+D + I+T S D +
Sbjct: 225 GSSIAVGCADRNAYVYDIRRLVDPLIV---LDGHTKTVTYARFMDSHTIVTGSTDGSLKQ 281
Query: 442 WDIETGQQCGQ-FTGH 486
WDI+ G++ + + GH
Sbjct: 282 WDIDNGRRVVRTYRGH 297
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 352 LPGHSGYLSCCRFLDDNQILTS-SGDMTCALWDIETGQQCGQFTGHTGDVMS-LCW 513
L GHSG ++C F Q+L S S D T +WD+ T Q HTG V S LCW
Sbjct: 254 LEGHSGEVTC--FAVGGQMLYSGSVDKTIKMWDLNTLQCIMTLKQHTGTVTSLLCW 307
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPL 223
+L GH ++ + S L S S DG L VWD ++ VH+I L
Sbjct: 126 SLEGHNKELKGIALPEGSDKLFSVSIDGTLRVWDCNSGQCVHSINL 171
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 39.5 bits (88), Expect = 0.002
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGN-VRVSRELPGHSGYLSCCRFL-DDNQILTSSGDMT 432
SG Y+A D C+ K + N V + L H +S + DD ++LT
Sbjct: 235 SGKYLATASSD--CTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSPDDTKLLTCGNAEV 292
Query: 433 CALWDIETGQQCGQF-TGHTGDVMSLC-WRRTSARSCPGRATPSAKLV 570
LWD++TG F +TG +S C W S R G + P +V
Sbjct: 293 LKLWDVDTGVLRHTFGNNNTGFTVSSCAWFPDSTRLVCGSSDPERGIV 340
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 128 GSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAPTSL 277
G DS + S S+D ++ +W+ T + + S V ++ P+ P L
Sbjct: 452 GLDSSFIASGSEDSQVYIWNLKNTKPLEVLSGHSMTVNCVSWNPKNPRML 501
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 352 LPGHSGYLSCCRFLDDNQILTSSG-DMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSA 528
+ GH L+ R+ + +L S D T +W + G++ G + GH+G V R S+
Sbjct: 33 MKGHERPLTFLRYNRNGDLLFSCAKDHTPTVWFADNGERLGTYRGHSGAVWCCDISRDSS 92
Query: 529 RSCPGRATPSAKL 567
R G A +AKL
Sbjct: 93 RLITGSADQTAKL 105
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYL-SCCRFLDDNQILTSSGDMT 432
P + GG D I+ +T + ++ S E GH + S C+ DD+ LT S D T
Sbjct: 185 PLNQTIVSGGEDAAIRIWDAETGK-LLKQSDEEVGHKEAITSLCKAADDSHFLTGSHDKT 243
Query: 433 CALWDIET 456
LWD+ T
Sbjct: 244 AKLWDMRT 251
Score = 32.3 bits (70), Expect = 0.30
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +1
Query: 400 NQILTSSG-DMTCALWDIETG---QQCGQFTGHTGDVMSLCWRRTSARSCPGRATPSAKL 567
NQ + S G D +WD ETG +Q + GH + SLC + G +AKL
Sbjct: 187 NQTIVSGGEDAAIRIWDAETGKLLKQSDEEVGHKEAITSLCKAADDSHFLTGSHDKTAKL 246
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 107 KIYAMHWGSDSRNLVSASQDGKLIVWDSHT 196
KI WG ++ +VS +D + +WD+ T
Sbjct: 177 KINRAVWGPLNQTIVSGGEDAAIRIWDAET 206
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQ---ILTSSGD 426
P GS +I +YS E ++R E+ H G ++ F N+ + T D
Sbjct: 427 PDGSLFGVAYSRHIVQLYSYHGGE-DMRQHLEIDAHVGGVNDIAFSTPNKQLCVTTCGDD 485
Query: 427 MTCALWDIETGQQCGQFTGHTGDVMSLC 510
T +WD TG + F GH V S+C
Sbjct: 486 KTIKVWDAATGVKRYTFEGHEAPVYSIC 513
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQ---ILTSSGD 426
P GS +I +YS E ++R E+ H G ++ F N+ + T D
Sbjct: 427 PDGSLFGVAYSRHIVQLYSYHGGE-DMRQHLEIDAHVGGVNDIAFSTPNKQLCVTTCGDD 485
Query: 427 MTCALWDIETGQQCGQFTGHTGDVMSLC 510
T +WD TG + F GH V S+C
Sbjct: 486 KTIKVWDAATGVKRYTFEGHEAPVYSIC 513
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +1
Query: 250 LRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRF-LDDNQILTSSGD 426
L P Y+A D I++L ++ + L GH ++ C F +D ++T+S D
Sbjct: 225 LSPGNKYLATASSDKTVKIWNLD----GFKLEKVLTGHERWVWDCDFSMDGEYLVTASSD 280
Query: 427 MTCALWDIETGQQCGQFTGH 486
T LW + G++ + H
Sbjct: 281 TTARLWSMRAGKEEMVYQAH 300
>At1g03110.1 68414.m00288 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat domain 4 protein (GI:9955698) [Mus
musculus]
Length = 427
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLD-NI-CSIYSLKTREGNVRVSRELPGHSGYLSCCRF-----LDDN 402
L P G Y+ D I +++ K EG + GHS +++C F L
Sbjct: 161 LEFSPDGRYILSADRDFKIRVTVFPKKPLEGAHEIQSFCLGHSEFITCTAFVSTPELTQG 220
Query: 403 QILTSSGDMTCALWDIETG 459
+++ SGD T LWDI +G
Sbjct: 221 YLMSGSGDSTVRLWDITSG 239
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 95 GHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
GH + I + W + NL SA +DG+L++WD+ T H + + V ++ P
Sbjct: 215 GHESAIADVSWHMKNENLFGSAGEDGRLVIWDTRTNQMQHQVKVHEREVNYLSFNP 270
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSHTT 199
L GH + Y + W L+S SQD K+ +WD T
Sbjct: 164 LVGHDKEGYGLSWSPFKEGYLLSGSQDQKICLWDVSAT 201
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 349 ELPGHSGYLSCCRFLDDNQILTSSGDMTCALWDIET 456
EL GH +SC + L ++LT++ D T +WD+ T
Sbjct: 934 ELKGHDSQVSCVKMLSGERVLTAAHDGTVKMWDVRT 969
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/83 (26%), Positives = 39/83 (46%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGDMTCA 438
S +A G D + +I+ + R G + +L GH+ ++ R ++D ++T S D T
Sbjct: 991 STGILAAAGRDTVANIWDI--RSG--KQMHKLKGHTKWIRSIRMVEDT-LITGSDDWTAR 1045
Query: 439 LWDIETGQQCGQFTGHTGDVMSL 507
+W + G H G V S+
Sbjct: 1046 VWSVSRGSCDAVLACHAGPVQSV 1068
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = +1
Query: 253 RPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGDMT 432
R + G D + I+ R +R + L GH+G + D +I++ S D++
Sbjct: 864 REDAGFFISGSTDCLVKIWDPSLRGSELRAT--LKGHTGTVRAISS-DRGKIVSGSDDLS 920
Query: 433 CALWDIETGQQCGQFTGHTGDV 498
+WD +T Q + GH V
Sbjct: 921 VIVWDKQTTQLLEELKGHDSQV 942
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 394 DDNQILTSSGDMTCA-LWDIETGQQCGQFTGHTGDVMSL 507
D IL ++G T A +WDI +G+Q + GHT + S+
Sbjct: 990 DSTGILAAAGRDTVANIWDIRSGKQMHKLKGHTKWIRSI 1028
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQIL-TSS 420
+ P G +V GGLDN+ ++ L ++ E H G + F +L T S
Sbjct: 97 IEFSPDGRWVVSGGLDNVVKVWDLTAG----KLLHEFKCHEGPIRSLDFHPLEFLLATGS 152
Query: 421 GDMTCALWDIETGQQCG 471
D T WD+ET + G
Sbjct: 153 ADRTVKFWDLETFELIG 169
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG 423
+ P G ++A G D ++ + ++G ++ + GH+ +S F D + + S G
Sbjct: 55 VEFHPFGEFLASGSSDTNLRVWDTR-KKGCIQTYK---GHTRGISTIEFSPDGRWVVSGG 110
Query: 424 -DMTCALWDIETGQQCGQFTGHTGDVMSL 507
D +WD+ G+ +F H G + SL
Sbjct: 111 LDNVVKVWDLTAGKLLHEFKCHEGPIRSL 139
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/59 (23%), Positives = 24/59 (40%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
+T +GH I + + D R +VS D + VWD +H + + + P
Sbjct: 85 QTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKCHEGPIRSLDFHP 143
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 268 YVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDD-NQILTSSGDMTCALW 444
+V G D +Y+ T + ++V H+ Y+ C +L+SS DM LW
Sbjct: 71 WVVAGADDMFIRVYNYNTMD-KIKV---FEAHADYIRCVAVHPTLPYVLSSSDDMLIKLW 126
Query: 445 DIETGQQCGQ-FTGHTGDVMSL 507
D E G C Q F GH+ VM +
Sbjct: 127 DWEKGWLCTQIFEGHSHYVMQV 148
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +1
Query: 274 ACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFL---DDNQILTSSGDMTCALW 444
A LD I++L + + N + L G ++C + D ++T S D T +W
Sbjct: 159 ASASLDRTIKIWNLGSPDPNFTLDAHLKG----VNCVDYFTGGDKPYLITGSDDHTAKVW 214
Query: 445 DIETGQQCGQFTGHTGDVMSL 507
D +T GHT +V ++
Sbjct: 215 DYQTKSCVQTLEGHTHNVSAV 235
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +2
Query: 86 TLRGHLAKIYAMHW--GSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
TL HL + + + G D L++ S D VWD T + V + + V ++ P
Sbjct: 180 TLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHP 239
Query: 260 RAP 268
P
Sbjct: 240 ELP 242
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +2
Query: 32 QATSNLEPIGRI-QMRTRRTL---RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 199
+A+S + + R+ +RT R + +GH+ ++ ++ + + +L S +D + +WD
Sbjct: 145 KASSGFDSLARVWDLRTARNILIFQGHIKQVLSVDFSPNGYHLASGGEDNQCRIWDLRMR 204
Query: 200 NKVHAIPLRSSWVMTCAYAPR 262
++ IP + V Y P+
Sbjct: 205 KLLYIIPAHVNLVSQVKYEPQ 225
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQ--ILTSSGDM 429
P+G ++A GG DN C I+ L+ R ++ +P H +S ++ + + T+S DM
Sbjct: 182 PNGYHLASGGEDNQCRIWDLRMR----KLLYIIPAHVNLVSQVKYEPQERYFLATASHDM 237
Query: 430 TCALWDIETGQQCGQFTGHTGDVMSL 507
+W GH V SL
Sbjct: 238 NVNIWSGRDFSLVKSLVGHESKVASL 263
>At1g64350.1 68414.m07292 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to nuclear pore protein SEH1 (SP:P53011)
[Saccharomyces cerevisiae]
Length = 326
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 59 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVH 211
GR+ ++ +L GH +++ M W L S DG + +W S+ + H
Sbjct: 266 GRLPVKKVSSLSGHQGEVWQMEWDMSGMTLASTGSDGMVKLWQSNLNGEWH 316
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 271 VACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG-DMTCALWD 447
VA GG D+ ++ + GN + ELPGH +SC F D Q+L S G D ++D
Sbjct: 86 VATGGGDDKAFLWKI----GNGDWAAELPGHKDSVSCLAFSYDGQLLASGGLDGVVQIFD 141
Query: 448 IETG 459
+G
Sbjct: 142 ASSG 145
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = +1
Query: 358 GHSG--YLSCCRFLDDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
GH G Y C D + T GD LW I G + GH V L +
Sbjct: 68 GHKGELYALACSPTDATLVATGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAF 121
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 65 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVH 211
+Q T R + H + ++ W S+ L + +G + +WDS N VH
Sbjct: 316 LQHSTPRFICEHEEGVTSLTWIGTSKYLATGCANGTVSIWDSLLGNCVH 364
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +2
Query: 95 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 217
GH + + D + + + S D LIVW+ T +H +
Sbjct: 195 GHNLNVTCGDFTPDGKLICTGSDDASLIVWNPKTCESIHIV 235
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQI-LTSSGDMTCA 438
G +A GGLD + I+ + G ++ + PG + R+ I L S D +
Sbjct: 125 GQLLASGGLDGVVQIFDASS--GTLKCVLDGPGAG--IEWVRWHPRGHIVLAGSEDCSLW 180
Query: 439 LWDIETGQQCGQFTGHTGDV 498
+W+ + F+GH +V
Sbjct: 181 MWNADKEAYLNMFSGHNLNV 200
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 37.1 bits (82), Expect = 0.011
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG-DMT 432
PSG V G LD+ I+ + G ++ L GH + F Q+L SS D T
Sbjct: 444 PSGDVVCAGTLDSF-EIFVWSKKTGQIKDI--LSGHEAPVHGLMFSPLTQLLASSSWDYT 500
Query: 433 CALWDIETGQQCGQFTGHTGDVMSLCWR 516
LWD+ + + H DV+++ +R
Sbjct: 501 VRLWDVFASKGTVETFRHNHDVLTVAFR 528
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 187
T H + A+H+ +D+ +L+SAS DG + WD
Sbjct: 386 TFTEHTNAVTALHFMADNHSLLSASLDGTVRAWD 419
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 358 GHSGYLSCCRFLDDNQIL-TSSGDMTCALWDIETGQQCGQFTGHTGDVMSL 507
GH ++C + D+Q+L T + D +W++ +G FT HT V +L
Sbjct: 347 GHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTAL 397
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 37.1 bits (82), Expect = 0.011
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG-DMT 432
PSG V G LD+ I+ + G ++ L GH + F Q+L SS D T
Sbjct: 484 PSGDVVCAGTLDSF-EIFVWSKKTGQIKDI--LSGHEAPVHGLMFSPLTQLLASSSWDYT 540
Query: 433 CALWDIETGQQCGQFTGHTGDVMSLCWR 516
LWD+ + + H DV+++ +R
Sbjct: 541 VRLWDVFASKGTVETFRHNHDVLTVAFR 568
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 187
T H + A+H+ +D+ +L+SAS DG + WD
Sbjct: 426 TFTEHTNAVTALHFMADNHSLLSASLDGTVRAWD 459
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 358 GHSGYLSCCRFLDDNQIL-TSSGDMTCALWDIETGQQCGQFTGHTGDVMSL 507
GH ++C + D+Q+L T + D +W++ +G FT HT V +L
Sbjct: 387 GHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTAL 437
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGH--SGYLSCCRFLDDNQ-ILT 414
+ + P+G+++A LDN IYS + R + + GH +GY F D + +++
Sbjct: 461 ISVHPNGNWLAAQSLDNQILIYSTRER-FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 519
Query: 415 SSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
G+ C WD ++ + H G + W
Sbjct: 520 GDGEGKCWFWDWKSCKVFRTLKCHNGVCIGAEW 552
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 346 RELPGHSGYL-SCCRFLDDNQILTSSGDMTCALWDIETGQQCGQF-TGHTGDVMSL 507
R GH+ + C D ++ LT+ D WD ETGQ F TG V+ L
Sbjct: 320 RTYMGHAKAVRDICFSNDGSKFLTAGYDKNIKYWDTETGQVISTFSTGKIPYVVKL 375
Score = 27.5 bits (58), Expect = 8.6
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Frame = +1
Query: 241 DLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQ--ILT 414
D+ GS G D + +T G V +S G Y+ DD Q +L
Sbjct: 331 DICFSNDGSKFLTAGYDKNIKYWDTET--GQV-ISTFSTGKIPYVVKLNPDDDKQNILLA 387
Query: 415 SSGDMTCALWDIETGQQCGQFTGHTGDVMSL 507
D WDI TG+ ++ H G V ++
Sbjct: 388 GMSDKKIVQWDINTGEVTQEYDQHLGAVNTI 418
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLS--CCRFLDDNQILTSSGDMT 432
+G+ +A G +D I++++ + EL GH+ + C + + T+SGD +
Sbjct: 31 NGTKLASGSVDQTARIWNIEPHGHSKAKDLELKGHTDSVDQLCWDPKHSDLVATASGDKS 90
Query: 433 CALWDIETGQQCGQFTGHTGDVMSLCWR 516
LWD +G +C Q +G+ +++ ++
Sbjct: 91 VRLWDARSG-KCTQQVELSGENINITYK 117
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW--DSHTTNKVHAIPLR 226
R +GH K++++ W S+ L S S D +W + H +K + L+
Sbjct: 14 REYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDLELK 63
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 36.7 bits (81), Expect = 0.014
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGDMTCA 438
SG +A G D+ +Y R + + + GHS +S +F+D + +++SS D T
Sbjct: 672 SGRSLAFGSADH--KVYYYDLRNPKIPLCTMI-GHSKTVSYVKFVDSSTLVSSSTDNTLK 728
Query: 439 LWDIETG------QQCGQFTGHT 489
LWD+ FTGHT
Sbjct: 729 LWDLSMSASGINESPLHSFTGHT 751
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 36.3 bits (80), Expect = 0.019
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +1
Query: 265 SYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQ-ILTSSGDMTCAL 441
S V G D SI+ L V L GH + F +Q ++T+SGD T +
Sbjct: 512 SLVCTGSEDRTASIWRLPDLVHVVT----LKGHKRRIFSVEFSTVDQCVMTASGDKTVKI 567
Query: 442 WDIETGQQCGQFTGHTGDVM 501
W I G F GHT V+
Sbjct: 568 WAISDGSCLKTFEGHTSSVL 587
Score = 34.3 bits (75), Expect = 0.075
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG-DMTCA 438
GS++AC D I + S + V + G S L+ D+++L S+G
Sbjct: 31 GSFIACACGDVINIVDSTDSS-----VKSTIEGESDTLTALALSPDDKLLFSAGHSRQIR 85
Query: 439 LWDIETGQQCGQFTGHTGDVMSL 507
+WD+ET + + GH G VM +
Sbjct: 86 VWDLETLKCIRSWKGHEGPVMGM 108
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 406 ILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTS 525
I+T S D T LW+ + G TGH GD++++ + + S
Sbjct: 419 IVTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAFAKKS 458
Score = 30.7 bits (66), Expect = 0.93
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSG-YLSCCRFLDDNQILTSS 420
L L P + G ++ L+T ++ R GH G + + T+
Sbjct: 66 LALSPDDKLLFSAGHSRQIRVWDLET----LKCIRSWKGHEGPVMGMACHASGGLLATAG 121
Query: 421 GDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSARS 534
D +WD++ G F GH G V S+ + S ++
Sbjct: 122 ADRKVLVWDVDGGFCTHYFRGHKGVVSSILFHPDSNKN 159
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 199
+T GH + + + +D VS DG L +W+ +T+
Sbjct: 577 KTFEGHTSSVLRASFITDGTQFVSCGADGLLKLWNVNTS 615
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 68 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTC 247
++ + L GH + A+ W S+ L+S S D ++ +W+ + +H+I + + C
Sbjct: 39 RLSQEQELEGHQGCVNALAWNSNGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANIFC 98
Query: 248 A-YAPRAPTSLVV 283
+ P LVV
Sbjct: 99 TKFVPETSDELVV 111
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +1
Query: 337 RVSRELPGHSGYLSCCRFLDDNQILTSSG-DMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
+V R GH + C +L + G D C +WDI T Q +GH V S+
Sbjct: 251 KVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQIFALSGHDNTVCSVFT 310
Query: 514 RRTSARSCPG 543
R T + G
Sbjct: 311 RPTDPQVVTG 320
Score = 35.5 bits (78), Expect = 0.033
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 346 RELPGHSGYLSCCRFLDDNQ-ILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSL 507
R + GH G++ F N+ T S D T +WD+ TG TGH V L
Sbjct: 170 RVIQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGL 224
Score = 30.7 bits (66), Expect = 0.93
Identities = 18/80 (22%), Positives = 34/80 (42%)
Frame = +2
Query: 68 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTC 247
Q + R+ GHL+ +Y + L++ +D VWD T ++ A+ + V +
Sbjct: 249 QNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQIFALSGHDNTVCSV 308
Query: 248 AYAPRAPTSLVVDWTTSARF 307
P P + T+ +F
Sbjct: 309 FTRPTDPQVVTGSHDTTIKF 328
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 35.9 bits (79), Expect = 0.025
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Frame = +2
Query: 26 LAQATSNLEPIGRIQMRT-RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTN 202
LA +++NL + ++ + R +L+GH I ++ W L S S+D + VW T +
Sbjct: 792 LAASSANLVNVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSED-MVKVWTLGTGS 850
Query: 203 K---VHAIPLRSSWVMTCAYAPRAPTSLVV 283
+ VH + + +C + P P+ LV+
Sbjct: 851 EGECVHELSCNGNKFQSCVFHPAYPSLLVI 880
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 29.1 bits (62), Expect(2) = 0.030
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 346 RELPGHSGYLSCCRFLDDNQILTSSGDMTCALWDIETG-QQC 468
+EL GH+G + + D N +L++S D T LW TG QC
Sbjct: 266 QELYGHTGDVLDLAWSDSNLLLSASKDKTVRLW--RTGCDQC 305
Score = 28.7 bits (61), Expect = 3.7
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 184
+ GH KI+ + + D + L + +DG + +W
Sbjct: 194 INGHKGKIWTLKFSPDGKYLATGGEDGVVKIW 225
Score = 25.4 bits (53), Expect(2) = 0.030
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSL 315
L+ P G Y+A GG D + I+ +
Sbjct: 204 LKFSPDGKYLATGGEDGVVKIWRI 227
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 35.5 bits (78), Expect = 0.033
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNV--RVSRELPGH-SGYLSCCRFLDDNQILT 414
+R PSG +A G I+ L E N +V + L H L DD +++
Sbjct: 70 IRFSPSGELLASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLIS 129
Query: 415 SSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
S D +C +WD+ G H V + W
Sbjct: 130 GSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 162
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAY 253
+ ++L H + + W D L+S S D I+WD + + + +V A+
Sbjct: 103 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 162
Query: 254 APRA 265
P A
Sbjct: 163 DPLA 166
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 35.5 bits (78), Expect = 0.033
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNV--RVSRELPGH-SGYLSCCRFLDDNQILT 414
+R PSG +A G I+ L E N +V + L H L DD +++
Sbjct: 70 IRFSPSGELLASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLIS 129
Query: 415 SSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
S D +C +WD+ G H V + W
Sbjct: 130 GSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 162
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAY 253
+ ++L H + + W D L+S S D I+WD + + + +V A+
Sbjct: 103 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 162
Query: 254 APRA 265
P A
Sbjct: 163 DPLA 166
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 35.5 bits (78), Expect = 0.033
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +2
Query: 62 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD------SHTTNKVHAIPL 223
RI+ T RGH ++ + W + L S D + +WD + TT +H +
Sbjct: 253 RIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEE 312
Query: 224 RSSWVMTCAYAP 259
+S V A+ P
Sbjct: 313 HTSAVKALAWCP 324
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 35.5 bits (78), Expect = 0.033
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +2
Query: 62 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD------SHTTNKVHAIPL 223
RI+ T RGH ++ + W + L S D + +WD + TT +H +
Sbjct: 243 RIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEE 302
Query: 224 RSSWVMTCAYAP 259
+S V A+ P
Sbjct: 303 HTSAVKALAWCP 314
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 35.5 bits (78), Expect = 0.033
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 196
TLRGH A + ++W D L S S D + +W+ T
Sbjct: 113 TLRGHTADVVDLNWSPDDSMLASGSLDNTVHIWNMRT 149
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +1
Query: 250 LRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTS-SGD 426
++P+G A GG D+ L+ + R+ L H G ++C R+ +++ + S S D
Sbjct: 21 VQPNGERFATGGGDHKSVDKDLQNIDTKERLLATLRDHFGSVNCVRWAKNSRYVASGSDD 80
Query: 427 MTCALWDIETGQQCGQF-TGHTGDV 498
+ + + G +F +G DV
Sbjct: 81 QVIQIHERKPGSGTTEFGSGEAPDV 105
Score = 29.1 bits (62), Expect = 2.8
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 14/104 (13%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRV-SRELP------------GHSGYLSCC 384
+R + YVA G D + I+ K G S E P GH+ +
Sbjct: 65 VRWAKNSRYVASGSDDQVIQIHERKPGSGTTEFGSGEAPDVENWKAVMTLRGHTADVVDL 124
Query: 385 RFLDDNQILTSSG-DMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
+ D+ +L S D T +W++ TG GH V + W
Sbjct: 125 NWSPDDSMLASGSLDNTVHIWNMRTGMCTTVLRGHLSLVKGVTW 168
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVH 211
LRGHL+ + + W + S S D +I+W + H
Sbjct: 156 LRGHLSLVKGVTWDPIGSFIASQSDDKTVIIWRTSDWGMAH 196
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQD 166
R TLR H + + W +SR + S S D
Sbjct: 50 RLLATLRDHFGSVNCVRWAKNSRYVASGSDD 80
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = +1
Query: 250 LRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQIL-TSSGD 426
+ P+ Y LD Y L + +VS + + F D IL T +
Sbjct: 317 VHPTNKYFVSASLDGTWCFYDLSSGSCLAQVSDDSKNVD--YTAAAFHPDGLILGTGTSQ 374
Query: 427 MTCALWDIETGQQCGQFTGHTGDVMSL 507
+WD+++ +F GHTG+V ++
Sbjct: 375 SVVKIWDVKSQANVAKFDGHTGEVTAI 401
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQ-ILTSSGDMTC 435
S +A GG+D ++ + + + L GHS ++ +F+ D+ +LT+S D T
Sbjct: 233 SKDVIATGGVDATAVLFDRPSGQ----ILSTLTGHSKKVTSVKFVGDSDLVLTASADKTV 288
Query: 436 ALW 444
+W
Sbjct: 289 RIW 291
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/65 (23%), Positives = 32/65 (49%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGDMTC 435
P G + G ++ I+ +K+ + NV + GH+G ++ F ++ L ++ +
Sbjct: 363 PDGLILGTGTSQSVVKIWDVKS-QANVA---KFDGHTGEVTAISFSENGYFLATAAEDGV 418
Query: 436 ALWDI 450
LWD+
Sbjct: 419 RLWDL 423
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = +1
Query: 250 LRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQIL-TSSGD 426
+ P+ Y LD Y L + +VS + + F D IL T +
Sbjct: 317 VHPTNKYFVSASLDGTWCFYDLSSGSCLAQVSDDSKNVD--YTAAAFHPDGLILGTGTSQ 374
Query: 427 MTCALWDIETGQQCGQFTGHTGDVMSL 507
+WD+++ +F GHTG+V ++
Sbjct: 375 SVVKIWDVKSQANVAKFDGHTGEVTAI 401
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQ-ILTSSGDMTC 435
S +A GG+D ++ + + + L GHS ++ +F+ D+ +LT+S D T
Sbjct: 233 SKDVIATGGVDATAVLFDRPSGQ----ILSTLTGHSKKVTSVKFVGDSDLVLTASADKTV 288
Query: 436 ALW 444
+W
Sbjct: 289 RIW 291
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/65 (23%), Positives = 32/65 (49%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGDMTC 435
P G + G ++ I+ +K+ + NV + GH+G ++ F ++ L ++ +
Sbjct: 363 PDGLILGTGTSQSVVKIWDVKS-QANVA---KFDGHTGEVTAISFSENGYFLATAAEDGV 418
Query: 436 ALWDI 450
LWD+
Sbjct: 419 RLWDL 423
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 35.5 bits (78), Expect = 0.033
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Frame = +1
Query: 238 DDLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFL--DDNQIL 411
+D+ P+ + C D+ C I R G V++ H L C + DDN IL
Sbjct: 296 EDVAFSPTSAQEFCSVGDDSCLIL-WDARTGTNPVTKVEKAHDADLHCVDWNPHDDNLIL 354
Query: 412 TSSGDMTCALWDIE------TGQQCGQFTGHTGDVMSLCW 513
T S D T L+D G +F GH V+ + W
Sbjct: 355 TGSADNTVRLFDRRKLTANGVGSPIYKFEGHKAAVLCVQW 394
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 95 GHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSHTTNK 205
GH A + + W D ++ S+++DG L +WD +K
Sbjct: 384 GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDRVSK 421
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGH-SGYLSCCRFLDDNQILTSS 420
L+ +G Y+A D I+ + +G++ + L GH ++ DD Q+LT
Sbjct: 280 LQFSHNGKYLASSSKDQTAIIWEISA-DGHISLKHTLVGHHKPVIAILWSPDDRQVLTCG 338
Query: 421 GDMTCALWDIETG 459
+ WD+++G
Sbjct: 339 AEEVIRRWDVDSG 351
Score = 31.5 bits (68), Expect = 0.53
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 265 SYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDN--QILTSSGDMTCA 438
+++A G D+ I+ T G + V ELPGH+G ++C + N + ++S D T
Sbjct: 502 AFIASGSEDSQVYIWHRST--GKLIV--ELPGHAGAVNCVSWSPTNLHMLASASDDGTIR 557
Query: 439 LWDIETGQQCGQ 474
+W ++ Q Q
Sbjct: 558 IWGLDRINQQNQ 569
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = +1
Query: 325 EGNVRVSRELPGH--SGYL--SCCRFLDDNQILTSSGDMTCALWDIETGQQCGQFTGHTG 492
EG+ ++ GH S ++ SC I + S D +W TG+ + GH G
Sbjct: 473 EGDPKIVSRYKGHKRSRFIIRSCFGGYKQAFIASGSEDSQVYIWHRSTGKLIVELPGHAG 532
Query: 493 DVMSLCWRRTS 525
V + W T+
Sbjct: 533 AVNCVSWSPTN 543
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 352 LPGHSGYLSCCRFLDDNQILTSSGDMTCALWDIE 453
L GH+ +S +FLD+ ++T+S D T LWD++
Sbjct: 878 LSGHNKAVSYAKFLDNETLVTASTDNTLKLWDLK 911
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = +1
Query: 349 ELPGHSGYLSCC-RFLDDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTS 525
E+P S C N + +S D LWD+ TGQ F H W
Sbjct: 749 EMPNRSKLSGVCWNNYIRNYLASSDYDGIVKLWDVTTGQAISHFIEHE----KRAWSVDF 804
Query: 526 ARSCP 540
+ +CP
Sbjct: 805 SEACP 809
>At3g21060.1 68416.m02662 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Retinoblastoma-binding protein 5 (RBBP-5)
[Homo sapiens](RBQ-3)
Length = 547
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGDMTCAL 441
GS +A G D C I+ +TR G + R+ + S +++L S+ D + L
Sbjct: 35 GSLLAAGCADGGCVIWDFETR-GIAKEIRDNDCSAAITSVSWSKYGHRLLVSAADKSLTL 93
Query: 442 WDIETGQQ 465
WD+ TG++
Sbjct: 94 WDVSTGEK 101
>At1g12910.1 68414.m01499 flower pigmentation protein (AN11)
contains 3 WD-40 repeats (PF00400); identical to
GB:AAC18912 from [Arabidopsis thaliana] (Genes Dev. 11
(11), 1422-1434 (1997))
Length = 346
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 394 DDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
+ +I TSS D TC +WDIE Q H +V + W
Sbjct: 147 EPRRIGTSSTDTTCTIWDIEREAVDTQLIAHDKEVFDIAW 186
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 34.7 bits (76), Expect = 0.057
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +1
Query: 406 ILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSARSCPGRATPSAKL 567
++++S D L + ETG G F GH G V S C + R+ A SAKL
Sbjct: 34 LISASKDSQPMLRNGETGDWIGTFEGHKGAVWSSCLDNNALRAASASADFSAKL 87
>At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 447
Score = 34.3 bits (75), Expect = 0.075
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 238 DDLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQIL-T 414
+++ P G VA G C L G+ +V L GH Y + + QIL T
Sbjct: 281 NNISTSPDGKLVAVLGDSPEC----LLADTGSGKVIHGLEGHLDYSFSSAWHPNGQILAT 336
Query: 415 SSGDMTCALWDIET-GQQCGQFTGHTGDVMSL 507
+ D TC LWD+ Q G+ G + +L
Sbjct: 337 GNQDTTCRLWDVRNLSQSLKVLKGNMGAIRAL 368
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 34.3 bits (75), Expect = 0.075
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +1
Query: 406 ILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSARSCPGRATPSAKL 567
++++S D L + ETG G F GH G V S C + R+ A SAKL
Sbjct: 34 LISASKDSHPMLRNGETGDWIGTFEGHKGAVWSSCLDNNALRAASASADFSAKL 87
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 34.3 bits (75), Expect = 0.075
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +1
Query: 406 ILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSARSCPGRATPSAKL 567
++++S D L + ETG G F GH G V S C + R+ A SAKL
Sbjct: 34 LISASKDSHPMLRNGETGDWIGTFEGHKGAVWSSCLDNNALRAASASADFSAKL 87
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 33.9 bits (74), Expect = 0.099
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGS-DSRNLVSASQDGKLIVWDSH 193
R R TL GH K+ A+ SR++VSA+ D + +WD H
Sbjct: 306 RVRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLH 346
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Frame = +1
Query: 250 LRPSGSYVACGGLDNICSIYSLKTRE--GNVRVSRELPGHSGYLSCCRFLDDNQILTSSG 423
L +G+ + G DN+ +++ +T E G +R S S + C DD+ + S
Sbjct: 407 LSRNGNRILTSGRDNVHNVFDTRTLEICGTLRASGNRLA-SNWSRSCISPDDDYVAAGSA 465
Query: 424 DMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
D + +W + G T ++ W
Sbjct: 466 DGSVHVWSLSKGNIVSILKEQTSPILCCSW 495
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 382 CRFLDDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSAR 531
C +D + + D LWDI+TG+ + GH+ V S+ R R
Sbjct: 364 CLSIDGLTVFSGHMDGNLRLWDIQTGKLLSEVAGHSSAVTSVSLSRNGNR 413
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +1
Query: 394 DDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSAR 531
D+ ++ ++ +WD+ +G+ TGHT V ++ + S+R
Sbjct: 284 DNKSVIAATSSNNLFVWDVSSGRVRHTLTGHTDKVCAVDVSKFSSR 329
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 33.9 bits (74), Expect = 0.099
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +2
Query: 98 HLAKIYAMHWGSDSR-NLVSASQDGKLIVWDSHT---TNKVHAIPL 223
H + I A W S +L+SAS DGK+++WD T T H+ PL
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDLRTAVMTKHTHSFPL 402
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 352 LPGHSGYLSCCRFLDDNQILTSSGDMTCALWDIETGQ 462
L GH+ +S + + + I +SS D + WD+ETG+
Sbjct: 268 LVGHTQCVSSVVWPEHDVIYSSSWDHSVRRWDVETGK 304
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 33.9 bits (74), Expect = 0.099
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSR------------ELPGHSGYLSCCR 387
L + G Y+A GG+D ++ ++TRE +V+V++ GH G +S
Sbjct: 212 LAVSSDGRYLATGGVDCHVHLWDIRTRE-HVQVNKLKNNQVKDSVHCAFTGHCGIVSSLC 270
Query: 388 FLDDN-QILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSL 507
F + ++ + S D T ++W+ E GH +++S+
Sbjct: 271 FREGTAELFSGSYDGTLSIWNAEHRTYIESCFGHQSELLSI 311
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 33.9 bits (74), Expect = 0.099
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 65 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 187
+ ++ R RGH +I + + D + ++S+S DG L +WD
Sbjct: 545 VTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRIWD 585
Score = 30.7 bits (66), Expect = 0.93
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 289 DNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG-DMTCALWDIETGQQ 465
DN ++ T +G+ R+ R GHS C RF + + + S+G D L+ + QQ
Sbjct: 289 DNSLKMWIFDTNDGDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSVIQEQQ 348
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 406 ILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
+ T + D L+D+ T + +F GHT + LC+
Sbjct: 530 LATVADDFVIRLYDVVTLKMVREFRGHTDRITDLCF 565
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 33.9 bits (74), Expect = 0.099
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG-DMTC 435
SG+ + G DN+C ++ + G + + L GH ++ D + S+G D T
Sbjct: 283 SGNLILSGSDDNLCKVWDRRCFIGRDKPAGVLVGHLEGVTFIDSRGDGRYFISNGKDQTI 342
Query: 436 ALWDI 450
LWDI
Sbjct: 343 KLWDI 347
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 343 SRELPGHSGYLSCCRF-LDDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
S E G+S + +F D +++ S D + ++D+E + + HT DV ++C+
Sbjct: 222 SDEDGGYSFGIFSVKFSTDGREVVAGSSDDSIYVYDLEANRVSLRTVAHTSDVNTVCF 279
>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
trafficking regulator - Bos taurus, EMBL: AF114785
Length = 3471
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 53 PIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIP 220
P G ++R ++L H AK+ + + S+S D +I+WD + + V +P
Sbjct: 3308 PRGSRRLRLEKSLCAHTAKVICLRVSQPYMMIASSSDDCTVIIWDLSSLSFVRQLP 3363
>At3g26640.1 68416.m03329 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to ATAN11 (GI:2290528) [Arabidopsis thaliana]
(Genes Dev. 11 (11), 1422-1434 (1997)); contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies)
Length = 346
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 394 DDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
+ +I TSS D TC +WDIE Q H +V + W
Sbjct: 147 EPRRIGTSSIDTTCTIWDIEREVVDTQLIAHDKEVYDIAW 186
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 346 RELPGHSGYLSCCRF-LDDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSL 507
++L GH + C F ++T S D +W +ET GH GD+ L
Sbjct: 299 KKLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETALCLASCRGHEGDITDL 353
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +1
Query: 241 DLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDN----QI 408
DL + + + VA D + ++ L + +S L GH+G ++ F Q+
Sbjct: 352 DLAVSSNNALVASASNDFVIRVWRLPD---GMPIS-VLRGHTGAVTAIAFSPRQASVYQL 407
Query: 409 LTSSGDMTCALWDIETGQ 462
L+SS D TC +WD Q
Sbjct: 408 LSSSDDGTCRIWDARYSQ 425
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +2
Query: 68 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 196
+M+ + LRGH +Y + R +++ S D + +W T
Sbjct: 294 KMQNIKKLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET 336
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 33.1 bits (72), Expect = 0.17
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYL-SCCRFLDDNQILTSSGDMTC 435
SGS G + C+ Y G ++++ GHS YL + +QILT S D T
Sbjct: 171 SGSVFTAAG--DSCA-YCWDVESGKIKMT--FKGHSDYLHTVVSRSSASQILTGSEDGTA 225
Query: 436 ALWDIETGQ 462
+WD +TG+
Sbjct: 226 RIWDCKTGK 234
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/54 (24%), Positives = 30/54 (55%)
Frame = +1
Query: 406 ILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSARSCPGRATPSAKL 567
+ T++GD WD+E+G+ F GH+ + ++ R ++++ G +A++
Sbjct: 174 VFTAAGDSCAYCWDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARI 227
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 217
+ + T +GH ++ + S + +++ S+DG +WD T V I
Sbjct: 192 KIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKCVKVI 239
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 394 DDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSA 528
D+ + + GD WD+ TG+ +F GH G+V ++ + +S+
Sbjct: 71 DNAKFCSCGGDRQVYYWDVSTGRVIRKFRGHDGEVNAVKFNDSSS 115
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD--SHTTNKVHAIPLRSSWVMT 244
R R RGH ++ A+ + S +VSA D L VWD SH+ V I VM+
Sbjct: 93 RVIRKFRGHDGEVNAVKFNDSSSVVVSAGFDRSLRVWDCRSHSVEPVQIIDTFLDTVMS 151
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAY 253
+ ++L H + + W D L+S S D I+WD + + + +V A+
Sbjct: 44 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 103
Query: 254 APRA 265
P A
Sbjct: 104 DPLA 107
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +1
Query: 394 DDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
DD +++ S D +C +WD+ G H V + W
Sbjct: 64 DDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 103
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +1
Query: 289 DNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGDMTCALWDIETGQQC 468
D+ C ++ K + E GH+G + + DN +L++S D T LW + +
Sbjct: 303 DSACVVFPPKVFRIMEKPLYEFRGHTGEVLDISWSKDNYLLSASMDKTVRLWKVGSNDCL 362
Query: 469 GQFTGHTGDVMSL 507
G F H V S+
Sbjct: 363 GVF-AHNSYVTSV 374
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 184
++ H I AM + +D + L S+ +DG + VW
Sbjct: 217 IKAHDGAILAMKFSNDGKFLASSGEDGIVRVW 248
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 361 HSGYLSCCRFLDDNQILTS-SGDMTCALWDIETGQQCGQFTGHTGDVMS-LCW 513
HSG ++C F+ ++L S S D T +WD+ T Q H G V S LCW
Sbjct: 311 HSGEVTC--FVVGGEVLYSGSVDKTIKVWDLNTLQCRMTLKQHIGTVTSLLCW 361
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRS 229
L GH I + S L S S DG L++WD ++ V +I L++
Sbjct: 183 LEGHKNDIKGIALPQGSDKLFSVSGDGTLLIWDCNSGQCVRSINLQA 229
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 32.7 bits (71), Expect = 0.23
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 95 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 187
GH IYA+ W D + +++ S D +WD
Sbjct: 230 GHKGSIYAVSWSPDGKQVLTVSADKSAKIWD 260
Score = 31.9 bits (69), Expect = 0.40
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDN-QILTSS 420
+R P GS D IY KT E +S + GH G + + D Q+LT S
Sbjct: 193 VRFAPDGSKFITVSSDKKGIIYDGKTCEILGELSSD-DGHKGSIYAVSWSPDGKQVLTVS 251
Query: 421 GDMTCALWDI 450
D + +WDI
Sbjct: 252 ADKSAKIWDI 261
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGDMTC 435
P+ + VA G LD +Y + + + R++ + H G + F DD+ +++S D
Sbjct: 544 PNSTMVATGSLDTCVIVYEVD-KPASSRMTIK-GAHLGGVYGLGFADDSHVVSSGEDACI 601
Query: 436 ALW 444
+W
Sbjct: 602 RVW 604
Score = 27.5 bits (58), Expect = 8.6
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Frame = +1
Query: 247 RLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGD 426
R P+G ++A G + I+ +V + E +G + ++ D + +SGD
Sbjct: 63 RYSPNGEWIASGDVSGTVRIWG--AYNDHV-LKNEFKVLAGRIDDLQWSADGMRIVASGD 119
Query: 427 ------MTCALWDIETGQQCGQFTGHTGDVMSLCWRRT 522
+ +WD +G G+F GH+ V+S + T
Sbjct: 120 GKGKSLVRAFMWD--SGSNVGEFDGHSRRVLSCAIKPT 155
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 32.7 bits (71), Expect = 0.23
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDN-QILTSSGDMTCA 438
G +A G D I++++T ++V H+ ++ RF ++ Q+ TSS D T
Sbjct: 520 GKLLASAGHDKKVFIWNMET----LQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIK 575
Query: 439 LWDI-ETGQQCGQFTGHTGDVMSL 507
+WD + G +GH VMS+
Sbjct: 576 IWDASDPGYFLRTISGHAAPVMSI 599
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 26 LAQATSNLEPIGRIQMRTRRT--LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 199
LA A+ N I I+ +R +GH + ++++ W + + S S+D + +W +
Sbjct: 648 LAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDA-VKLWSLSSG 706
Query: 200 NKVHAIPLRSSWVMTCAYAPRAPTSLVV 283
+ +H + + + + P P LV+
Sbjct: 707 DCIHELSNSGNKFHSVVFHPSYPDLLVI 734
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 403 QILTSSGDMTCALWDIETG-QQCGQFTGHTGDVMSLCW 513
Q L ++ + T +++DIE ++ F GH+ +V S+CW
Sbjct: 646 QFLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCW 683
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 32.7 bits (71), Expect = 0.23
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDN-QILTSSGDMTCA 438
G +A G D I++++T ++V H+ ++ RF ++ Q+ TSS D T
Sbjct: 522 GKLLASAGHDKKVFIWNMET----LQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIK 577
Query: 439 LWDI-ETGQQCGQFTGHTGDVMSL 507
+WD + G +GH VMS+
Sbjct: 578 IWDASDPGYFLRTISGHAAPVMSI 601
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 26 LAQATSNLEPIGRIQMRTRRT--LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 199
LA A+ N I I+ +R +GH + ++++ W + + S S+D + +W +
Sbjct: 650 LAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDA-VKLWSLSSG 708
Query: 200 NKVHAIPLRSSWVMTCAYAPRAPTSLVV 283
+ +H + + + + P P LV+
Sbjct: 709 DCIHELSNSGNKFHSVVFHPSYPDLLVI 736
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 403 QILTSSGDMTCALWDIETG-QQCGQFTGHTGDVMSLCW 513
Q L ++ + T +++DIE ++ F GH+ +V S+CW
Sbjct: 648 QFLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCW 685
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 32.7 bits (71), Expect = 0.23
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDN-QILTSSGDMTCA 438
G +A G D I++++T ++V H+ ++ RF ++ Q+ TSS D T
Sbjct: 522 GKLLASAGHDKKVFIWNMET----LQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIK 577
Query: 439 LWDI-ETGQQCGQFTGHTGDVMSL 507
+WD + G +GH VMS+
Sbjct: 578 IWDASDPGYFLRTISGHAAPVMSI 601
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 26 LAQATSNLEPIGRIQMRTRRT--LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 199
LA A+ N I I+ +R +GH + ++++ W + + S S+D + +W +
Sbjct: 650 LAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDA-VKLWSLSSG 708
Query: 200 NKVHAIPLRSSWVMTCAYAPRAPTSLVV 283
+ +H + + + + P P LV+
Sbjct: 709 DCIHELSNSGNKFHSVVFHPSYPDLLVI 736
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 403 QILTSSGDMTCALWDIETG-QQCGQFTGHTGDVMSLCW 513
Q L ++ + T +++DIE ++ F GH+ +V S+CW
Sbjct: 648 QFLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCW 685
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 32.7 bits (71), Expect = 0.23
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDN-QILTSSGDMTCA 438
G +A G D I++++T ++V H+ ++ RF ++ Q+ TSS D T
Sbjct: 522 GKLLASAGHDKKVFIWNMET----LQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIK 577
Query: 439 LWDI-ETGQQCGQFTGHTGDVMSL 507
+WD + G +GH VMS+
Sbjct: 578 IWDASDPGYFLRTISGHAAPVMSI 601
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 26 LAQATSNLEPIGRIQMRTRRT--LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 199
LA A+ N I I+ +R +GH + ++++ W + + S S+D + +W +
Sbjct: 650 LAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDA-VKLWSLSSG 708
Query: 200 NKVHAIPLRSSWVMTCAYAPRAPTSLVV 283
+ +H + + + + P P LV+
Sbjct: 709 DCIHELSNSGNKFHSVVFHPSYPDLLVI 736
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 403 QILTSSGDMTCALWDIETG-QQCGQFTGHTGDVMSLCW 513
Q L ++ + T +++DIE ++ F GH+ +V S+CW
Sbjct: 648 QFLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCW 685
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 32.7 bits (71), Expect = 0.23
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDN-QILTSSGDMTCA 438
G +A G D I++++T ++V H+ ++ RF ++ Q+ TSS D T
Sbjct: 522 GKLLASAGHDKKVFIWNMET----LQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIK 577
Query: 439 LWDI-ETGQQCGQFTGHTGDVMSL 507
+WD + G +GH VMS+
Sbjct: 578 IWDASDPGYFLRTISGHAAPVMSI 601
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 26 LAQATSNLEPIGRIQMRTRRT--LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 199
LA A+ N I I+ +R +GH + ++++ W + + S S+D + +W +
Sbjct: 650 LAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDA-VKLWSLSSG 708
Query: 200 NKVHAIPLRSSWVMTCAYAPRAPTSLVV 283
+ +H + + + + P P LV+
Sbjct: 709 DCIHELSNSGNKFHSVVFHPSYPDLLVI 736
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 403 QILTSSGDMTCALWDIETG-QQCGQFTGHTGDVMSLCW 513
Q L ++ + T +++DIE ++ F GH+ +V S+CW
Sbjct: 648 QFLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCW 685
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRF--LDDNQILTSSGDM 429
P+G +ACG +D ++ + ++ +L GH+ + F +D + + S D
Sbjct: 168 PNGKRLACGSMDGTICVFDV----DRSKLLHQLEGHNMPVRSLVFSPVDPRVLFSGSDDG 223
Query: 430 TCALWDIETGQQCGQFTGHTGDVMSL 507
+ D E G +GHT V+S+
Sbjct: 224 HVNMHDAEGKTLLGSMSGHTSWVLSV 249
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 32.3 bits (70), Expect = 0.30
Identities = 34/137 (24%), Positives = 50/137 (36%), Gaps = 8/137 (5%)
Frame = +1
Query: 127 GQRFQELGVGQSGW*ADRVGQPHDQQGARDPAALVLGDDLRLRPSGSYVACGGLDNICSI 306
G F++ G G VG G +D +D+ PS + C D+ C +
Sbjct: 253 GSSFKQTGEGSDKTGGPSVGPRGIYNGHKDTV-----EDVAFCPSSAQEFCSVGDDSC-L 306
Query: 307 YSLKTREGNVRVSRELPGHSGYLSCCRFL--DDNQILTSSGDMTCALWDIE------TGQ 462
R G + H L C + D+N ILT S D T ++D G
Sbjct: 307 MLWDARTGTSPAMKVEKAHDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGS 366
Query: 463 QCGQFTGHTGDVMSLCW 513
+F GH V+ + W
Sbjct: 367 PVYKFEGHRAAVLCVQW 383
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 95 GHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSHTTNK 205
GH A + + W D ++ S+++DG L +WD K
Sbjct: 373 GHRAAVLCVQWSPDKSSVFGSSAEDGLLNIWDCDRVGK 410
>At3g20740.1 68416.m02624 fertilization-independent endosperm
protein (FIE) contains 6 WD-40 repeats (PF00400);
identical to fertilization-independent endosperm protein
(GI:4567095) [Arabidopsis thaliana]
Length = 369
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 268 YVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRF--LDDNQILTSSGDMTCAL 441
YVA GG+ I + + + + + L GH ++ R L ++T+S D + L
Sbjct: 100 YVAAGGVKGIIRVIDVNSET----IHKSLVGHGDSVNEIRTQPLKPQLVITASKDESVRL 155
Query: 442 WDIETG 459
W++ETG
Sbjct: 156 WNVETG 161
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTN 202
+ RGH + + + SD +++AS D + VWDS TT+
Sbjct: 341 KEFRGHTSYVNHAIFTSDGSRIITASSDCTVKVWDSKTTD 380
Score = 30.7 bits (66), Expect = 0.93
Identities = 18/80 (22%), Positives = 33/80 (41%)
Frame = +2
Query: 65 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMT 244
+Q + + H + + + DS L S SQDGK+ +W T + S V +
Sbjct: 251 LQYQADESFMMHDDPVLCIDFSRDSEMLASGSQDGKIKIWRIRTGVCIRRFDAHSQGVTS 310
Query: 245 CAYAPRAPTSLVVDWTTSAR 304
+++ L + +AR
Sbjct: 311 LSFSRDGSQLLSTSFDQTAR 330
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGDMTCA 438
+G +A G D+ +Y R + + + GH +S RF+D + +++SS D T
Sbjct: 630 TGRSLAFGSADH--KVYYYDLRNPKLPLCTMI-GHHKTVSYVRFVDSSTLVSSSTDNTLK 686
Query: 439 LWDI 450
LWD+
Sbjct: 687 LWDL 690
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGDMTCA 438
+G +A G D+ +Y R + + + GH +S RF+D + +++SS D T
Sbjct: 630 TGRSLAFGSADH--KVYYYDLRNPKLPLCTMI-GHHKTVSYVRFVDSSTLVSSSTDNTLK 686
Query: 439 LWDI 450
LWD+
Sbjct: 687 LWDL 690
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 32.3 bits (70), Expect = 0.30
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQ-ILTSSGDMTC 435
S +A GG+D ++ + + + L GHS ++ +F+ D +LT+S D T
Sbjct: 233 SKDVIATGGIDTTAVLFDRPSGQ----ILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTV 288
Query: 436 ALWDI-ETGQQCGQFT--GHTGDVMSLCWRRTS 525
+W E G + T H+ +V ++ T+
Sbjct: 289 RIWGCSEDGNYTSRHTLKDHSAEVRAVTVHATN 321
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQIL-TSSGDMTC 435
+ Y LD+ Y L + +V+ Y + F D IL T +
Sbjct: 320 TNKYFVSASLDSTWCFYDLSSGLCLAQVTDASENDVNYTAAA-FHPDGLILGTGTAQSIV 378
Query: 436 ALWDIETGQQCGQFTGHTGDVMSL 507
+WD+++ +F GH G++ S+
Sbjct: 379 KIWDVKSQANVAKFGGHNGEITSI 402
>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
similar to BEIGE (GI:3928547) [Rattus norvegicus];
Similar to gb|U70015 lysosomal trafficking regulator from
Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
repeats. ESTs gb|T43386 and gb|AA395236 come from this
gene
Length = 3601
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +2
Query: 53 PIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIP 220
P G ++R + L H AK+ + + S S D +I+WD + + V +P
Sbjct: 3364 PRGSRRLRLEKALCAHTAKVTCLRVSQPYMMIASGSDDCTVIIWDLSSLSFVRQLP 3419
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 31.5 bits (68), Expect = 0.53
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +1
Query: 235 GDDLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFL----DDN 402
GD L S + + N C I + +G + VS L GH+G ++ F
Sbjct: 288 GDITDLAVSSNNIFIASASNDCVIRVWRLPDG-LPVS-VLRGHTGAVTAIAFSPRPGSPY 345
Query: 403 QILTSSGDMTCALWDIETGQ 462
Q+L+SS D TC +WD Q
Sbjct: 346 QLLSSSDDGTCRIWDARGAQ 365
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 346 RELPGHSGYLSCCRFLDDN--QILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSL 507
+ L GH + C LD + ++T S D +W ++T GH GD+ L
Sbjct: 239 KRLRGHRNAVYCA-ILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDL 293
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGS-DSRNLVSASQDGKLIVWD 187
+L GH A Y M + R +SA DGK IVWD
Sbjct: 581 SLTGHTASTYVMDVHPFNPRIAMSAGYDGKTIVWD 615
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +2
Query: 53 PIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIP--LR 226
P G + R T RG + + W D+R +++A D ++ VW++ + VH++
Sbjct: 532 PRGGPRQRILPTPRG----VNMIAWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTA 587
Query: 227 SSWVMTC-AYAPRAPTSLVVDWTT 295
S++VM + PR S D T
Sbjct: 588 STYVMDVHPFNPRIAMSAGYDGKT 611
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 31.5 bits (68), Expect = 0.53
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 280 GGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQ-ILTSSGDMTCALWDIET 456
GG D +++ KT R L GH Y+ +F +N I+++S D T +W+ ++
Sbjct: 69 GGDDYKIKVWNYKTH----RCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQS 124
Query: 457 GQQCGQFTGHTGDVM 501
TGH VM
Sbjct: 125 RTCISVLTGHNHYVM 139
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPR 262
TL GHL I + + ++ +VSAS D + +W+ + + + + +VM ++ P+
Sbjct: 88 TLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 190
TLRGH+ + ++ + + +VS S+D + VWD+
Sbjct: 243 TLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDA 277
>At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 (1
significant) WD-40 repeats (PF0400); similar to Trp-Asp
repeat protein (PIR:T40094) [Schizosaccharomyces]
Length = 445
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 217
+T TL GHL +A W D + +QD VWD +K A+
Sbjct: 308 KTLATLSGHLDFSFASAWHPDGFTFSTGNQDKTCRVWDIRNLSKSVAV 355
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 343 SRELPGHSGYLSCCRFLDDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSL-CW 513
S L GH+ ++ N++ + S D T +W ++ Q T H+ VMSL CW
Sbjct: 267 SASLTGHT-LAVVTLYVGANRLYSGSMDKTIKVWSLDNLQCIQTLTDHSSVVMSLICW 323
>At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 391 LDDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
++ ++ T S D TC +WDIE Q H +V + W
Sbjct: 143 VEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAW 183
>At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 391 LDDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
++ ++ T S D TC +WDIE Q H +V + W
Sbjct: 143 VEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAW 183
>At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 391 LDDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
++ ++ T S D TC +WDIE Q H +V + W
Sbjct: 143 VEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAW 183
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 184
++ H I AM + D R L SA +DG L VW
Sbjct: 247 IQAHEGAILAMKFSPDGRYLASAGEDGVLRVW 278
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 349 ELPGHSGYLSCCRFLDDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSL 507
E GHSG + + +N++L++S D + LW I G F+ H V S+
Sbjct: 351 EFLGHSGDILDISWSKNNRLLSASVDNSVRLWQIGCEDCLGIFS-HNNYVTSV 402
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 184
++ H I AM + D R L SA +DG L VW
Sbjct: 247 IQAHEGAILAMKFSPDGRYLASAGEDGVLRVW 278
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 349 ELPGHSGYLSCCRFLDDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSL 507
E GHSG + + +N++L++S D + LW I G F+ H V S+
Sbjct: 351 EFLGHSGDILDISWSKNNRLLSASVDNSVRLWQIGCEDCLGIFS-HNNYVTSV 402
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 98 HLAKIYAMHWGSDSR-NLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMT 244
H + I A W S +L+SAS DGK+++WD T + I + V++
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDLRTAWPLSVIDTHNDKVLS 406
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 352 LPGHSGYLSCCRFLDDNQILTSSGDMTCALWDIETGQ 462
L GH+ +S + + + I +SS D + WD+ETG+
Sbjct: 268 LVGHTQCVSSVVWPEHDVIYSSSWDHSVRRWDVETGK 304
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +1
Query: 301 SIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQ-ILTSSGDMTCALWDIETGQQCGQF 477
+IY L G + L G F D + +L+ SGD T W+IE + ++
Sbjct: 223 NIYVLDAYRGEKKCGFSLEPSQGTPIEATFTPDGKYVLSGSGDGTLHAWNIENPSEVARW 282
Query: 478 TGHTGDVMSLCW 513
+ G V L W
Sbjct: 283 ENNIGVVSCLKW 294
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 44 NLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT 199
NL IQ +L G + ++Y++ G+D L + +QDG ++VW ++T
Sbjct: 204 NLVKAWNIQNNADLSLNGPVGQVYSLVVGTDL--LFAGTQDGSILVWRYNST 253
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 388 FLDDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSL-CW 513
++ N++ + + D + +W ++ Q T HT VMSL CW
Sbjct: 274 YVGANRLYSGAMDNSIKVWSLDNLQCIQTLTEHTSVVMSLICW 316
>At1g27470.1 68414.m03349 transducin-related / WD-40 repeat
protein-related contains 6 WD-40 repeats (PF00400) (2
weak); related to KIAA1988 protein (GI:18916910) [Homo
sapiens]
Length = 810
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 217
R+L + ++ W +D++ + S S DG + WD++ ++V+ I
Sbjct: 192 RSLPRVTGRALSVTWSADAQRIFSGSSDGLIRCWDANLCHEVYRI 236
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/66 (22%), Positives = 30/66 (45%)
Frame = +1
Query: 289 DNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSGDMTCALWDIETGQQC 468
++ C++ K + E GH+G + + + +L+SS D T LW + + +C
Sbjct: 338 ESTCAVLPSKVFSISETPQHEFRGHTGEILDLSWSEKGFLLSSSVDETVRLWRVGSSDEC 397
Query: 469 GQFTGH 486
+ H
Sbjct: 398 IRVFSH 403
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 361 HSGYLSCCRF--LDDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSARS 534
H +++C F +DDN ++ S D +WD+ + +T V +LC+R +
Sbjct: 403 HKSFVTCVAFNPVDDNYFISGSIDGKVRIWDVSQFRVV-DYTDIRQIVTALCYRPDGKGA 461
Query: 535 CPGRAT 552
G T
Sbjct: 462 VVGSMT 467
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +2
Query: 134 DSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAPTSLVVDWTTSARF 307
D +S S DGK+ +WD V +R C Y P ++V T RF
Sbjct: 416 DDNYFISGSIDGKVRIWDVSQFRVVDYTDIRQIVTALC-YRPDGKGAVVGSMTGECRF 472
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPR 262
TL GHL I + + + +VSAS D + +W+ + V + + +VM ++ P+
Sbjct: 88 TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCVSVLTGHNHYVMCASFHPK 146
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 190
TLRGH+ + ++ + + +VS S+D + VWD+
Sbjct: 243 TLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDA 277
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 280 GGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQ-ILTSSGDMTCALWDIET 456
GG D +++ K N R L GH Y+ +F + I+++S D T +W+ ++
Sbjct: 69 GGDDYKIKVWNYK----NHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124
Query: 457 GQQCGQFTGHTGDVM 501
TGH VM
Sbjct: 125 RTCVSVLTGHNHYVM 139
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 30.3 bits (65), Expect = 1.2
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Frame = +1
Query: 232 LGDDLRLRPSGS---YVACG-GLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDD 399
L D +L +G ++ C LD + +++ L T + L GH G ++ LD
Sbjct: 210 LAADTKLLVAGGTDGFIHCWKSLDGLRNLFDL-TGFQKEKTEFRLWGHEGPITSLA-LDM 267
Query: 400 NQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSARSCPG 543
I + S DM+ +WD + +C + H+ V L T+ S G
Sbjct: 268 TSIFSGSWDMSVRIWD-RSSMKCVKTLRHSDWVWGLAPHETTLASTSG 314
>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400) (2
weak); similar to Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 815
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +2
Query: 11 ACDTSLAQA--TSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 184
ACD + SNLE ++ R+L + ++ W D++ + S S DG + W
Sbjct: 171 ACDDGCVRLYRISNLE-----KLTYYRSLPRVSGRALSVTWSPDAKRIFSGSSDGLIRCW 225
Query: 185 DSHTTNKVHAI 217
D+ + ++V+ I
Sbjct: 226 DATSCHEVYRI 236
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Frame = +1
Query: 358 GHSGYLSCCRFLDDNQILTSSG-DMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSARS 534
GH + D +L S G + +WD TG + + GHT +V L T R
Sbjct: 211 GHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSKSMKLRGHTDNVRVLLLDST-GRF 269
Query: 535 CPGRATPSAKLVGRAGTARAKQTXPGHESDI 627
C ++ S + G R T H +
Sbjct: 270 CLSGSSDSMIRLWDLGQQRCLHTYAVHTDSV 300
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVH--AIPLRSSWVMTC 247
LRGH + + S R +S S D + +WD +H A+ S W + C
Sbjct: 251 LRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALAC 305
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 92 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNK 205
+GH +YA+ LVS + L VWD T +K
Sbjct: 210 KGHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSK 247
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Frame = +1
Query: 358 GHSGYLSCCRFLDDNQILTSSG-DMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSARS 534
GH + D +L S G + +WD TG + + GHT +V L T R
Sbjct: 211 GHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSKSMKLRGHTDNVRVLLLDST-GRF 269
Query: 535 CPGRATPSAKLVGRAGTARAKQTXPGHESDI 627
C ++ S + G R T H +
Sbjct: 270 CLSGSSDSMIRLWDLGQQRCLHTYAVHTDSV 300
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVH--AIPLRSSWVMTC 247
LRGH + + S R +S S D + +WD +H A+ S W + C
Sbjct: 251 LRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALAC 305
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 92 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNK 205
+GH +YA+ LVS + L VWD T +K
Sbjct: 210 KGHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSK 247
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRN--LVSASQDGKLIVWDSHTTN---KVHAIPLRSSWVMTCA 250
TL GH ++ + W L S S DG++I+W N + H S V + A
Sbjct: 51 TLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSVNSIA 110
Query: 251 YAP 259
+AP
Sbjct: 111 WAP 113
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 92 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 187
+ H I ++ + SD R L+S S DG L VWD
Sbjct: 370 KAHTDDITSVKFSSDGRILLSRSFDGSLKVWD 401
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 59 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLV-SASQDGKLIVWD 187
G + +R + +GH+ + W ++ V ++S+DG L +WD
Sbjct: 264 GDMYIRDLKNTKGHICGLTCGEWHPRTKETVLTSSEDGSLRIWD 307
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +1
Query: 361 HSGYLSCCRF--LDDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSARS 534
H+ +++C F +DDN ++ S D +WD+ T + +T V ++C+R + +
Sbjct: 361 HNNFVTCVAFNPVDDNYFISGSIDGKVRIWDV-TRCRVVDYTDIRDIVTAVCYRPDAKGA 419
Query: 535 CPGRATPSAK 564
G T + +
Sbjct: 420 VIGSMTGNCR 429
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +2
Query: 134 DSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAPTSLVVDWTTSARF 307
D +S S DGK+ +WD V +R C Y P A +++ T + RF
Sbjct: 374 DDNYFISGSIDGKVRIWDVTRCRVVDYTDIRDIVTAVC-YRPDAKGAVIGSMTGNCRF 430
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +1
Query: 361 HSGYLSCCRF--LDDNQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSARS 534
H+ +++C F +DDN ++ S D +WD+ T + +T V ++C+R + +
Sbjct: 361 HNNFVTCVAFNPVDDNYFISGSIDGKVRIWDV-TRCRVVDYTDIRDIVTAVCYRPDAKGA 419
Query: 535 CPGRATPSAK 564
G T + +
Sbjct: 420 VIGSMTGNCR 429
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +2
Query: 134 DSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAPTSLVVDWTTSARF 307
D +S S DGK+ +WD V +R C Y P A +++ T + RF
Sbjct: 374 DDNYFISGSIDGKVRIWDVTRCRVVDYTDIRDIVTAVC-YRPDAKGAVIGSMTGNCRF 430
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 406 ILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCWRRTSARSCPGRATPSAKL 567
++++S D L + ETG G F GH G V S + + R+ A +AK+
Sbjct: 29 LISASKDSNPMLRNGETGDWIGTFEGHKGAVWSCSLDKNAIRAASASADFTAKI 82
>At5g33280.1 68418.m03944 chloride channel-like (CLC) protein,
putative similar to CLC-c, At5g49890 [Arabidopsis
thaliana] and chloride channel protein ClC-1 - Nicotiana
tabacum, PIR:T02939
Length = 763
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 523 SARSCPGRATPSAKLVGRAGTARAKQTXPGHESDI 627
S + CP A +GR+G + Q PGH +D+
Sbjct: 375 SCQPCPVDALEECPTIGRSGNFKKYQCPPGHYNDL 409
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +2
Query: 62 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 187
RI+ T GH ++ + W + L S D + +WD
Sbjct: 205 RIRSSIVETYLGHTEEVCGLKWSESGKKLASGGNDNVVHIWD 246
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +2
Query: 98 HLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAPTS 274
H + + W + RN L SAS D K+ VWD T + + V A+ AP
Sbjct: 264 HTESVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYAPEV 323
Query: 275 LV 280
L+
Sbjct: 324 LL 325
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 400 NQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
N + ++S D +WD+ TG HT +V ++ W
Sbjct: 279 NILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAW 316
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +2
Query: 98 HLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAPTS 274
H + + W + RN L SAS D K+ VWD T + + V A+ AP
Sbjct: 232 HTRSVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYAPEV 291
Query: 275 LV 280
L+
Sbjct: 292 LL 293
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 400 NQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
N + ++S D +WD+ TG HT +V ++ W
Sbjct: 247 NILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAW 284
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYL-SCCRFLDDNQILTSSGDMTCA 438
GS + D I+ + ++E V L GHS + CC + D+ I+T+ D TC
Sbjct: 247 GSKIVSVSDDRSARIWEIDSQEV---VGPVLFGHSVRVWDCC--ISDSLIVTAGEDCTCR 301
Query: 439 LWDIETGQQCGQFTGHTG 492
+W ++ G Q H G
Sbjct: 302 VWGVD-GTQLEVIKEHIG 318
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 187
L GH I+ + W D +VS S D +W+
Sbjct: 231 LTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWE 263
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYL-SCCRFLDDNQILTSSGDMTCA 438
GS + D I+ + ++E V L GHS + CC + D+ I+T+ D TC
Sbjct: 247 GSKIVSVSDDRSARIWEIDSQEV---VGPVLFGHSVRVWDCC--ISDSLIVTAGEDCTCR 301
Query: 439 LWDIETGQQCGQFTGHTG 492
+W ++ G Q H G
Sbjct: 302 VWGVD-GTQLEVIKEHIG 318
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 187
L GH I+ + W D +VS S D +W+
Sbjct: 231 LTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWE 263
>At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies, 1
significant); similar to Trp-Asp repeat protein
(PIR:T40094) [Schizosaccharomyces]
Length = 447
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 187
+T TL GHL +A W D + +QD VWD
Sbjct: 310 KTLETLSGHLDFSFASAWHPDGVTFSTGNQDKTCRVWD 347
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRF-LDDNQILTSSGDMTCA 438
G+Y+A G D I+ T+ ++ + + G L CC + +D +LT D
Sbjct: 315 GAYLATVGRDGYLRIFDFSTQ----KLVCGVKSYYGALLCCAWSMDGKYLLTGGEDDLVQ 370
Query: 439 LWDIETGQQCGQFTGHTGDVMSLCW 513
+W +E + GH V + +
Sbjct: 371 VWSMEDRKVVAWGEGHNSWVSGVAF 395
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG-DMTC 435
S +A G D ++ SL V ++L GHS ++ F +NQ + SS D T
Sbjct: 184 SSDILAYGASDGSLTVCSLLEEPS---VLKQLTGHSKDVTDFDFSSNNQYIASSSLDKTI 240
Query: 436 ALWDIETG 459
+W++ G
Sbjct: 241 RVWELSRG 248
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 217
+T TL+GHL +A W + + +QD +WD+ ++ A+
Sbjct: 310 QTIGTLKGHLDYSFASAWHPNGVTFATGNQDKTCRIWDTRKLSESVAV 357
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 217
+T TL+GHL +A W + + +QD +WD+ ++ A+
Sbjct: 304 QTIGTLKGHLDYSFASAWHPNGVTFATGNQDKTCRIWDTRKLSESVAV 351
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 361 HSGYLSCCRF--LDDNQILTSSGDMTCALWDIETGQ 462
HS Y++C +F +DDN ++ S D +W I Q
Sbjct: 507 HSDYVTCIQFNPVDDNYFISGSLDAKVRIWSIPDHQ 542
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSHTT 199
L GH + Y + W S L+S SQD ++ +WD T
Sbjct: 165 LMGHEQEGYGLAWSSFKEGYLLSGSQDQRICLWDVSAT 202
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 340 RARCPRASSGYKSSRCCPVHHKRRRSPRGVGAGHHPGRAQRDRVH 206
R + P SGY S + H R SP+ GH+PG +Q R H
Sbjct: 456 RPKSPITPSGYNRSPSTHIGHNYR-SPKFNSGGHYPG-SQSSRHH 498
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 352 LPGHSGYLSCCRFLDDNQILTSSGDMTCALWDIETGQQCGQFTG 483
L GH +S +F+D I+++S D + LW++ G G
Sbjct: 890 LAGHEKAVSYVKFMDSETIVSASTDNSLKLWNLNKTNSSGLSPG 933
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTN 202
TL GH + + + DS +VSAS D L +W+ + TN
Sbjct: 889 TLAGHEKAVSYVKF-MDSETIVSASTDNSLKLWNLNKTN 926
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +2
Query: 35 ATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSH 193
A ++++ + +T T GH A + + D+ LV+ S+D +++W H
Sbjct: 2646 ADNSIKLVSSDGAKTLETAFGHCAPVTCLALSPDNNFLVTGSRDSTVLLWRIH 2698
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 352 LPGHSGYLSCCRFLDD--NQILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSL 507
+ GH +SC + I ++S D LWDI + + QF GH G V L
Sbjct: 52 MDGHRDGVSCMAKNPNYLKGIFSASMDGDIRLWDISSRRTVCQFPGHQGAVRGL 105
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 187
L+GH + + + + +S +++AS+DG + VW+
Sbjct: 285 LKGHKSAVTWLCFSPNSEQIITASKDGSIRVWN 317
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 95 GHLAKIYAMHWGSDSRNLVSASQDGKLIVW 184
GH + + + D LVS SQDG + VW
Sbjct: 118 GHYRSVTCLVFSGDDSLLVSGSQDGSIRVW 147
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRN--LVSASQDGKLIVWDSHTTN---KVHAIPLRSSWVMTCA 250
TL GH ++ + W L S S DG++I+W N + H V + A
Sbjct: 51 TLTGHRGPVWQVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIA 110
Query: 251 YAP 259
+AP
Sbjct: 111 WAP 113
>At2g25420.1 68415.m03045 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (3 repeats)
Length = 717
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKV 208
+ + L GH KI + + LVS+ DGKL +W + + K+
Sbjct: 502 KVKEKLEGHDQKITCLAFSRCFNVLVSSDSDGKLCLWSTKSWVKL 546
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +2
Query: 62 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 187
RI+ T GH ++ + W + L S D + +WD
Sbjct: 223 RIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWD 264
>At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 580
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +1
Query: 235 GDDLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILT 414
GD + PS ++A G C ++ L+ G + R H GY++ + + +++
Sbjct: 417 GDGASVSPS--WIAAGFSSGQCRLFDLR-ENGFISSWR---AHDGYVTKLVAPESHLLVS 470
Query: 415 SSGDMTCALWDI 450
SS D T +WD+
Sbjct: 471 SSLDKTLRIWDL 482
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 406 ILTSSGDMTCALWDIETGQQCGQFTGH 486
+L+SS D T LWDIET Q C + H
Sbjct: 533 LLSSSMDKTVRLWDIET-QSCLKLFAH 558
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 343 TRARCPRASS--GYKSSRCCPVHHKRRRSPRGVGAGHHPGRAQR 218
+++R R +S G +R CP + + SP GHH + QR
Sbjct: 195 SKSRLTRTASAIGAPCARICPYFTQTQASPPDAPNGHHQSQGQR 238
>At4g04920.1 68417.m00715 expressed protein
Length = 1250
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 119 MHWGSDS--RNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAPTSLVVDWT 292
+ W S R L+ A+ G++ +W T + + +SW C + R ++V W
Sbjct: 175 IEWSPTSCPRALLIANFHGRITIWTQPTQGSANLVHDATSW--QCEHEWRQDIAVVTKWL 232
Query: 293 TSA 301
T A
Sbjct: 233 TGA 235
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 184
RT LRGH + + S+ + L ++ D ++IVW
Sbjct: 390 RTTLMLRGHYESVNTCCFNSNDQELYTSGADRQIIVW 426
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQILTSSG--DMT 432
+G ++ G D+ ++ T + V V ++PG Y + + + L ++G D+
Sbjct: 116 TGMFIT-GSFDHYVKVWDTNTSQ--VVVDFKMPGKV-YRTAMSSMAMSHTLIAAGTDDVQ 171
Query: 433 CALWDIETGQQCGQFTGHTGDVMSLCWRRTS 525
L DI +G +GH VMS+ W +S
Sbjct: 172 VRLCDIASGAFSHTLSGHRDGVMSVEWSTSS 202
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 28.3 bits (60), Expect = 4.9
Identities = 33/145 (22%), Positives = 53/145 (36%), Gaps = 15/145 (10%)
Frame = +1
Query: 238 DDLRLRPSGSYVACGGLD---NICSIYSLKTREG----NVRVSRELPGHSGYLSCCRFLD 396
DDL +RP+ S + C + N +Y + E N + ELP + +L C
Sbjct: 118 DDLTIRPTDSLIICAAIKHEVNYLEVYVYEESENIYLRNDMIISELPLCTAWLDCPLKGG 177
Query: 397 DNQILTSSGDM--TCALWDIETGQ------QCGQFTGHTGDVMSLCWRRTSARSCPGRAT 552
+ G M + +WD++ Q G+ G T ++ W + G
Sbjct: 178 GKGNFVAIGTMESSIEIWDLDLVNEVLPCVQLGRIAGQTLFFLTFNWENRNI-VASGSED 236
Query: 553 PSAKLVGRAGTARAKQTXPGHESDI 627
K V T + K T HE +
Sbjct: 237 KKVK-VWDVATGKCKVTMEHHEKKV 260
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNL-VSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTC 247
RT + H +Y W ++ SAS D L +WD IP +++C
Sbjct: 143 RTFKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWDVREPGSTMIIPAHDFEILSC 198
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 184
RT LRGH + + S+ + L ++ D +++VW
Sbjct: 390 RTTLMLRGHYESVNTCCFNSNDQELYTSGSDRQILVW 426
>At4g25250.1 68417.m03633 invertase/pectin methylesterase inhibitor
family protein similar to pectinesterase from
Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 199
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 99 ISRRSTPCTGAAIPGTWCRPVRMVS*SCGTATRPTRC 209
I+ + P T A PGT+ V +C + T PT C
Sbjct: 15 INSSNFPKTAATPPGTYQNHTTYVKTACNSTTYPTMC 51
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 373 LSCCRFLDDNQ-ILTSSGDMTCALWDIETGQQCGQFTGHTGDVMSLCW 513
+S RF +++ +L SS D L+D+ T G+F H G V+ C+
Sbjct: 20 ISNLRFSNNSDHLLVSSWDKRVRLYDVSTNSLKGEFL-HGGAVLDCCF 66
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Frame = +1
Query: 349 ELPGHSGYLSCCRFLDDNQILTSSGDMTCALWDIETGQQCGQFT------GHTGDVMSLC 510
EL GH + +D I TSS D T +W ++ + ++T GHT V L
Sbjct: 15 ELHGHDDDVRGICVCNDENIATSSRDRTIRVWSLDPSDK-RKYTSEKILLGHTSFVGPLA 73
Query: 511 W 513
W
Sbjct: 74 W 74
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Frame = +1
Query: 349 ELPGHSGYLSCCRFLDDNQILTSSGDMTCALWDIETGQQCGQFT------GHTGDVMSLC 510
EL GH + +D I TSS D T +W ++ + ++T GHT V L
Sbjct: 15 ELHGHDDDVRGICVCNDENIATSSRDRTIRVWSLDPSDK-RKYTSEKILLGHTSFVGPLA 73
Query: 511 W 513
W
Sbjct: 74 W 74
>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1322
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 65 IQMRTRRTLRGHLAKIYAM-HWGSDSRNLVSASQDGKLIVW 184
I R RGH ++ M + D L S S DGK+ VW
Sbjct: 209 INTALRSLFRGHSQRVTDMAFFAEDVHLLASVSLDGKVFVW 249
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 352 LPGHSGYLSCCRFLDDNQILTSSGDMTCALWDIETGQQCGQFTGH 486
L GH + + +L+SS D T LWDIET + C + H
Sbjct: 502 LKGHLDAILDLSWSKSQLLLSSSMDKTVRLWDIET-KTCLKLFAH 545
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVH 211
T+ H I AM W L + S D L WD+ N VH
Sbjct: 109 TVAMHEGPIAAMAWIPGMNLLATGSWDKTLKYWDTRQQNPVH 150
>At3g54320.1 68416.m06003 ovule development protein, putative
similar to ovule development protein aintegumenta
(GI:1209099) [Arabidopsis thaliana]
Length = 427
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +1
Query: 46 PGADRSHTDAHPTNLARSS--REDLRHALGQRFQELGVGQSGW*ADRVGQPHDQQGARD 216
P D+SH P + RSS R RH RF+ +S W + + +QGA D
Sbjct: 46 PSGDKSHNPTSPASTRRSSIYRGVTRHRWTGRFEAHLWDKSSW--NSIQNKKGKQGAYD 102
>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1309
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 65 IQMRTRRTLRGHLAKIYAM-HWGSDSRNLVSASQDGKLIVW 184
I R RGH ++ M + D L S S DGK+ VW
Sbjct: 190 INTALRSLFRGHSQRVTDMAFFAEDVDMLASVSLDGKVFVW 230
>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1344
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 65 IQMRTRRTLRGHLAKIYAM-HWGSDSRNLVSASQDGKLIVW 184
I R RGH ++ M + D L S S DGK+ VW
Sbjct: 225 INTALRSLFRGHSQRVTDMAFFAEDVDMLASVSLDGKVFVW 265
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 241 DLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRF 390
+L P +A GGLDN +YS R G EL GH+ ++ F
Sbjct: 183 ELPQNPGRFALALGGLDNKIKLYS-GERTGKFTSVCELKGHTDWIRSLDF 231
>At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2
WD-40 repeats (PF0400);similar to guanine
nucleotide-binding protein beta subunit GPBA (SP:P36408)
[Dictyostelium discoideum (Slime mold)]; similar to
katanin p80 (WD40-containing) subunit B 1 (GI:12655011)
[Homo sapiens]
Length = 418
Score = 27.5 bits (58), Expect = 8.6
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLSCCRFLDDNQIL-TSSGDMT 432
P G +A G C I + G V S L GH Y + + IL T + D
Sbjct: 258 PDGKLLAVVGDSTECLISD--SHSGKVISS--LRGHKDYSFASAWHPNGLILATGNQDTA 313
Query: 433 CALWDIET-GQQCGQFTGHTGDVMSL 507
C LWDI + G+ G + L
Sbjct: 314 CRLWDIRNPSESFAVLKGNMGAIRGL 339
>At1g26330.1 68414.m03211 hypothetical protein
Length = 1196
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Frame = +2
Query: 134 DSRNLVSASQDGKLIVW--DSHTTNK-----VHAIPLRSSWVMTCAYAPRAP 268
D NL++A + G LIVW +SH + + A P SS +M P+ P
Sbjct: 945 DPNNLIAAVKSGNLIVWAMNSHWSGPTEEYVILANPCISSCIMELKKIPKCP 996
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,681,064
Number of Sequences: 28952
Number of extensions: 269248
Number of successful extensions: 1621
Number of sequences better than 10.0: 177
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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