Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060511.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   2.3  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       22   4.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   5.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   5.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   5.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   5.4  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   7.1  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    21   7.1  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    21   7.1  

>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 552 SHAPNTKRCAGPAPAQRH 499
           SH P TK    PAPA R+
Sbjct: 249 SHQPATKSKPRPAPASRN 266


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 31  PGHLEPGADRSHTDAHPTNLARSSREDLRHA 123
           P H  P +D+ H   H T +  ++  D   A
Sbjct: 32  PRHFNPPSDKLHHPIHQTVIYHNNPRDPNRA 62


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +1

Query: 43  EPGADRSHTDAHPTNLARSSREDLRHALG 129
           +P  D SH   H T+L         H LG
Sbjct: 126 QPPTDNSHVHHHQTSLLGKVEGAATHHLG 154



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 41  RWPGPATCRMPSC 3
           R+ G ATC  P+C
Sbjct: 284 RYTGRATCDCPNC 296


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = -1

Query: 328 PRASSGYKSSRCCPVHHKRRRSPRGVGAGHHPGRAQRDRVH 206
           P   SG+       V   R   P+  G G    R   DRVH
Sbjct: 195 PGGHSGFWGQLGAAVDESRTPRPKHDGRGRIVERFTSDRVH 235


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +2

Query: 452 RPGNSAGSSRATPVTSCRCAGAGPAQRFVFGACDASAKLWERA 580
           +P + + SSR   +    C      + +   ACD  A  ++R+
Sbjct: 23  KPQSPSSSSRILDIPCKVCGDFSSGKHYNIFACDGCAGFFKRS 65


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +2

Query: 452 RPGNSAGSSRATPVTSCRCAGAGPAQRFVFGACDASAKLWERA 580
           +P + + SSR   +    C      + +   ACD  A  ++R+
Sbjct: 23  KPQSPSSSSRILDIPCKVCGDFSSGKHYNIFACDGCAGFFKRS 65


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 576 RSHSLADASHAPNTKRCAGPAPAQRHDV 493
           R   +++   +PN+K+ A P+P  + +V
Sbjct: 210 RKQLVSEHPDSPNSKKSATPSPPPQLEV 237


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 283 GLDNICSIYSLKTREGNVRVSRELPG 360
           GL+ +  + SLK +  NV++   + G
Sbjct: 77  GLEELAHLMSLKEKNPNVKILLSMGG 102


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 283 GLDNICSIYSLKTREGNVRVSRELPG 360
           GL+ +  + SLK +  NV++   + G
Sbjct: 77  GLEELAHLMSLKEKNPNVKILLSMGG 102


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,765
Number of Sequences: 336
Number of extensions: 2626
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)