Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060511.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.7  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    22   6.3  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   6.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 461  NSAGSSRATPVTSCRCAGAGP 523
            N  GSS ++PV S R  G  P
Sbjct: 1479 NKIGSSPSSPVLSVRTQGQAP 1499


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 461  NSAGSSRATPVTSCRCAGAGP 523
            N  GSS ++PV S R  G  P
Sbjct: 1475 NKIGSSPSSPVLSVRTQGQAP 1495


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +2

Query: 446 TSRPGNSAGSSRATPVTSCRCAGAG-PAQRFVFGACDASAKLWE 574
           + + G+SAG+S  T  T C       P Q  +  A   S  + E
Sbjct: 781 SKKQGSSAGTSSITKYTGCELTSESMPLQSALTAAVQTSVGVTE 824


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +2

Query: 446  TSRPGNSAGSSRATPVTSCRCAGAG-PAQRFVFGACDASAKLWE 574
            + + G+SAG+S  T  T C       P Q  +  A   S  + E
Sbjct: 871  SKKQGSSAGTSSITKYTGCELTSESMPLQSALTAAVQTSVGVTE 914


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +1

Query: 235 GDDLRLRPS-GSYVACGGLD-NICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQI 408
           G D+RLRP+ G      G+D  I S  ++     +  ++  L  +        F  + ++
Sbjct: 47  GYDIRLRPNFGGEPLLVGMDLTIASFDAISEVNMDYTITMYLNQYWKDERLA-FSQEEEV 105

Query: 409 LTSSGDMTCELW 444
           LT SGD   ++W
Sbjct: 106 LTLSGDFAEKIW 117


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 343 TRARCPRASSGYKSSRC 293
           TR RC R+  GY  + C
Sbjct: 106 TRVRCGRSLEGYPFNPC 122


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 343 TRARCPRASSGYKSSRC 293
           TR RC R+  GY  + C
Sbjct: 122 TRVRCGRSLEGYPFNPC 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,839
Number of Sequences: 438
Number of extensions: 2954
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)