Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060511.seq
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 95 5e-20
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 95 5e-20
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 95 5e-20
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 50 1e-06
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 49 3e-06
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 48 6e-06
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 48 8e-06
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 45 5e-05
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 44 7e-05
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 44 9e-05
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 44 1e-04
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 43 2e-04
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 43 2e-04
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 43 2e-04
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 42 3e-04
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 42 3e-04
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 42 5e-04
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 42 5e-04
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 41 7e-04
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 41 7e-04
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 41 7e-04
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 41 9e-04
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 41 9e-04
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 40 0.001
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 40 0.001
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 40 0.002
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 40 0.002
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 40 0.002
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 38 0.005
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 38 0.005
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 38 0.005
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 38 0.005
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 38 0.006
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 38 0.006
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 38 0.006
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 38 0.008
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 38 0.008
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 38 0.008
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 38 0.008
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 37 0.011
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 37 0.011
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 37 0.011
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 37 0.011
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 37 0.011
At1g64350.1 68414.m07292 transducin family protein / WD-40 repea... 37 0.011
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 37 0.011
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 37 0.014
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 37 0.014
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 36 0.019
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 36 0.019
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 36 0.019
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 36 0.019
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 36 0.019
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 29 0.023
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 36 0.025
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 36 0.025
At1g03110.1 68414.m00288 transducin family protein / WD-40 repea... 36 0.025
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea... 36 0.033
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 35 0.044
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 35 0.044
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 35 0.044
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 35 0.044
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 35 0.044
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 35 0.044
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 35 0.058
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 35 0.058
At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pf... 35 0.058
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 34 0.076
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 34 0.10
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 34 0.10
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 34 0.10
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 34 0.10
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 33 0.13
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 33 0.13
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 33 0.13
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 33 0.13
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 33 0.13
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 33 0.13
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 33 0.13
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 33 0.18
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 33 0.18
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 33 0.18
At5g23730.1 68418.m02782 transducin family protein / WD-40 repea... 33 0.18
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 33 0.18
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 33 0.18
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 33 0.18
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 33 0.23
At1g12910.1 68414.m01499 flower pigmentation protein (AN11) cont... 33 0.23
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 32 0.31
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 32 0.41
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 32 0.41
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 32 0.41
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel... 32 0.41
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 31 0.54
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 31 0.71
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 31 0.71
At3g26640.1 68416.m03329 transducin family protein / WD-40 repea... 31 0.71
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 31 0.71
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 31 0.71
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 31 0.71
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 31 0.71
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 31 0.71
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 31 0.71
At1g27470.1 68414.m03349 transducin-related / WD-40 repeat prote... 31 0.94
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 31 0.94
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 30 1.2
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 30 1.2
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 30 1.2
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 30 1.2
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 30 1.6
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 30 1.6
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 30 1.6
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 30 1.6
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 30 1.6
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 30 1.6
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 29 2.2
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 29 2.2
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 29 2.2
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 29 2.2
At4g04920.1 68417.m00715 expressed protein 29 2.2
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 29 2.2
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 29 2.2
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 29 2.2
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 29 2.9
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 29 2.9
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 29 2.9
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 29 2.9
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 29 2.9
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 2.9
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 2.9
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 2.9
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 2.9
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 2.9
At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 ... 29 2.9
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 29 3.8
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 29 3.8
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 29 3.8
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 29 3.8
At2g25420.1 68415.m03045 transducin family protein / WD-40 repea... 29 3.8
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 29 3.8
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 29 3.8
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 28 5.0
At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pf... 28 5.0
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 28 5.0
At3g13290.1 68416.m01673 transducin family protein / WD-40 repea... 28 5.0
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 28 5.0
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 28 5.0
At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG... 28 6.6
At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG... 28 6.6
At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG... 28 6.6
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 28 6.6
At4g25250.1 68417.m03633 invertase/pectin methylesterase inhibit... 28 6.6
At3g13300.2 68416.m01675 transducin family protein / WD-40 repea... 28 6.6
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea... 28 6.6
At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2 ... 28 6.6
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 28 6.6
At5g14050.1 68418.m01644 transducin family protein / WD-40 repea... 27 8.8
At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pf... 27 8.8
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 94.7 bits (225), Expect = 5e-20
Identities = 46/94 (48%), Positives = 66/94 (70%), Gaps = 10/94 (10%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKT---REGNVRVSRELPGHSGYLXCCRFL--DDNQILTSS 420
P+G VACGGLD++CSI+SL + ++G V VSR L GH GY+ CC+++ +D ++TSS
Sbjct: 117 PNGQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLITSS 176
Query: 421 GDMTCELWDIXTXQQC----GQF-TGHTGDVMSL 507
GD TC LWD+ T + G+F +GHT DV+S+
Sbjct: 177 GDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSV 210
Score = 78.6 bits (185), Expect = 4e-15
Identities = 35/79 (44%), Positives = 51/79 (64%)
Frame = +2
Query: 23 SLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTN 202
S AQ + + G + RTL+GH K+Y++ W + +VSAS DG+LIVW++ T+
Sbjct: 40 SAAQGRTRVS-FGATDLVCCRTLQGHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQ 98
Query: 203 KVHAIPLRSSWVMTCAYAP 259
K HAI L +WVMTCA++P
Sbjct: 99 KTHAIKLPCAWVMTCAFSP 117
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +2
Query: 446 TSRPGNSAGSSRATPVTSCRCAGAGPAQRFVFGACDASAKLWE-RAGLQVQTDFPGHQSD 622
TS G S V S +G+ P F+ G+CD++A+LW+ RA + F GH+ D
Sbjct: 192 TSVFGGEFQSGHTADVLSVSISGSNP-NWFISGSCDSTARLWDTRAASRAVRTFHGHEGD 250
Query: 623 INAVTXFPVPGFAFATG 673
+N V FP G+ F TG
Sbjct: 251 VNTVKFFP-DGYRFGTG 266
Score = 33.5 bits (73), Expect = 0.13
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +1
Query: 238 DDLRLRPSGS---YVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDN-Q 405
D L + SGS + G D+ ++ TR + R R GH G + +F D +
Sbjct: 206 DVLSVSISGSNPNWFISGSCDSTARLWD--TRAAS-RAVRTFHGHEGDVNTVKFFPDGYR 262
Query: 406 ILTSSGDMTCELWDIXTXQQCGQFTGHTGD 495
T S D TC L+DI T Q + H GD
Sbjct: 263 FGTGSDDGTCRLYDIRTGHQLQVYQPH-GD 291
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 94.7 bits (225), Expect = 5e-20
Identities = 46/94 (48%), Positives = 66/94 (70%), Gaps = 10/94 (10%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKT---REGNVRVSRELPGHSGYLXCCRFL--DDNQILTSS 420
P+G VACGGLD++CSI+SL + ++G V VSR L GH GY+ CC+++ +D ++TSS
Sbjct: 55 PNGQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLITSS 114
Query: 421 GDMTCELWDIXTXQQC----GQF-TGHTGDVMSL 507
GD TC LWD+ T + G+F +GHT DV+S+
Sbjct: 115 GDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSV 148
Score = 65.3 bits (152), Expect = 4e-11
Identities = 25/51 (49%), Positives = 38/51 (74%)
Frame = +2
Query: 107 KIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
++Y++ W + +VSAS DG+LIVW++ T+ K HAI L +WVMTCA++P
Sbjct: 5 QVYSLDWTPERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP 55
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +2
Query: 446 TSRPGNSAGSSRATPVTSCRCAGAGPAQRFVFGACDASAKLWE-RAGLQVQTDFPGHQSD 622
TS G S V S +G+ P F+ G+CD++A+LW+ RA + F GH+ D
Sbjct: 130 TSVFGGEFQSGHTADVLSVSISGSNP-NWFISGSCDSTARLWDTRAASRAVRTFHGHEGD 188
Query: 623 INAVTXFPVPGFAFATG 673
+N V FP G+ F TG
Sbjct: 189 VNTVKFFP-DGYRFGTG 204
Score = 33.5 bits (73), Expect = 0.13
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +1
Query: 238 DDLRLRPSGS---YVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDN-Q 405
D L + SGS + G D+ ++ TR + R R GH G + +F D +
Sbjct: 144 DVLSVSISGSNPNWFISGSCDSTARLWD--TRAAS-RAVRTFHGHEGDVNTVKFFPDGYR 200
Query: 406 ILTSSGDMTCELWDIXTXQQCGQFTGHTGD 495
T S D TC L+DI T Q + H GD
Sbjct: 201 FGTGSDDGTCRLYDIRTGHQLQVYQPH-GD 229
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 94.7 bits (225), Expect = 5e-20
Identities = 46/94 (48%), Positives = 66/94 (70%), Gaps = 10/94 (10%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKT---REGNVRVSRELPGHSGYLXCCRFL--DDNQILTSS 420
P+G VACGGLD++CSI+SL + ++G V VSR L GH GY+ CC+++ +D ++TSS
Sbjct: 117 PNGQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLITSS 176
Query: 421 GDMTCELWDIXTXQQC----GQF-TGHTGDVMSL 507
GD TC LWD+ T + G+F +GHT DV+S+
Sbjct: 177 GDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSV 210
Score = 78.6 bits (185), Expect = 4e-15
Identities = 35/79 (44%), Positives = 51/79 (64%)
Frame = +2
Query: 23 SLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTN 202
S AQ + + G + RTL+GH K+Y++ W + +VSAS DG+LIVW++ T+
Sbjct: 40 SAAQGRTRVS-FGATDLVCCRTLQGHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQ 98
Query: 203 KVHAIPLRSSWVMTCAYAP 259
K HAI L +WVMTCA++P
Sbjct: 99 KTHAIKLPCAWVMTCAFSP 117
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +2
Query: 446 TSRPGNSAGSSRATPVTSCRCAGAGPAQRFVFGACDASAKLWE-RAGLQVQTDFPGHQSD 622
TS G S V S +G+ P F+ G+CD++A+LW+ RA + F GH+ D
Sbjct: 192 TSVFGGEFQSGHTADVLSVSISGSNP-NWFISGSCDSTARLWDTRAASRAVRTFHGHEGD 250
Query: 623 INAVTXFPVPGFAFATG 673
+N V FP G+ F TG
Sbjct: 251 VNTVKFFP-DGYRFGTG 266
Score = 33.5 bits (73), Expect = 0.13
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +1
Query: 238 DDLRLRPSGS---YVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDN-Q 405
D L + SGS + G D+ ++ TR + R R GH G + +F D +
Sbjct: 206 DVLSVSISGSNPNWFISGSCDSTARLWD--TRAAS-RAVRTFHGHEGDVNTVKFFPDGYR 262
Query: 406 ILTSSGDMTCELWDIXTXQQCGQFTGHTGD 495
T S D TC L+DI T Q + H GD
Sbjct: 263 FGTGSDDGTCRLYDIRTGHQLQVYQPH-GD 291
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDD-NQILTSSGDMT 432
P+ S + GG D + ++ TR G S L GH + ++ + N +LT+S D
Sbjct: 278 PTKSLLVSGGKDQLVKLWD--TRSGRELCS--LHGHKNIVLSVKWNQNGNWLLTASKDQI 333
Query: 433 CELWDIXTXQQCGQFTGHTGDVMSLCW 513
+L+DI T ++ F GHT DV SL W
Sbjct: 334 IKLYDIRTMKELQSFRGHTKDVTSLAW 360
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Frame = +2
Query: 2 GTRACDTSLAQATSNLEPIGRIQMRTRRT----LRGHLAKIYAMHWGSDSRNLVSASXDG 169
G A +S+ + S + I + +RT+ L+GH ++I + W SD+R L S D
Sbjct: 255 GALAWSSSVLSSGSRDKSILQRDIRTQEDHVSKLKGHKSEICGLKWSSDNRELASGGNDN 314
Query: 170 KLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
KL VW+ H+T V ++ V A++P
Sbjct: 315 KLFVWNQHSTQPVLRFCEHAAAVKAIAWSP 344
Score = 33.1 bits (72), Expect = 0.18
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSG-DMTC 435
S S ++ G D ++T+E +V +L GH + ++ DN+ L S G D
Sbjct: 260 SSSVLSSGSRDKSILQRDIRTQEDHVS---KLKGHKSEICGLKWSSDNRELASGGNDNKL 316
Query: 436 ELWDIXTXQQCGQFTGHTGDVMSLCW 513
+W+ + Q +F H V ++ W
Sbjct: 317 FVWNQHSTQPVLRFCEHAAAVKAIAW 342
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAP 268
L+GH I +HW SD +VSAS D + WD T ++ + SS+V +C R P
Sbjct: 92 LKGHKNAILDLHWTSDGSQIVSASPDKTVRAWDVETGKQIKKMAEHSSFVNSCCPTRRGP 151
Query: 269 TSLV 280
++
Sbjct: 152 PLII 155
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHS-----GYLXCCRFLDDNQI 408
+ L P GSY+ G+DN ++ ++ R + GH L C D ++
Sbjct: 228 MSLSPDGSYLLTNGMDNKLCVWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGTKV 287
Query: 409 LTSSGDMTCELWDIXTXQQCGQFTGHTGDV 498
S D +WD + + + GHTG V
Sbjct: 288 TAGSSDRMVHIWDTTSRRTIYKLPGHTGSV 317
Score = 40.7 bits (91), Expect = 9e-04
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDD-NQILTSS 420
++ P+G+ +A G D ++ + G+ + L GH + + D +QI+++S
Sbjct: 59 MKFNPAGTLIASGSHDREIFLWRV---HGDCKNFMVLKGHKNAILDLHWTSDGSQIVSAS 115
Query: 421 GDMTCELWDIXTXQQCGQFTGHTGDVMSLC 510
D T WD+ T +Q + H+ V S C
Sbjct: 116 PDKTVRAWDVETGKQIKKMAEHSSFVNSCC 145
Score = 31.9 bits (69), Expect = 0.41
Identities = 11/48 (22%), Positives = 22/48 (45%)
Frame = +2
Query: 125 WGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAP 268
W D + + S D + +WD+ + ++ +P + V C + P P
Sbjct: 280 WSPDGTKVTAGSSDRMVHIWDTTSRRTIYKLPGHTGSVNECVFHPTEP 327
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTS-SGDMT 432
P G+ V G D + I+ +R R +LPGH+G + C F I+ S S D
Sbjct: 282 PDGTKVTAGSSDRMVHIWDTTSR----RTIYKLPGHTGSVNECVFHPTEPIIGSCSSDKN 337
Query: 433 CELWDI 450
L +I
Sbjct: 338 IYLGEI 343
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWD 187
TL GH I M D L++ D KL VWD
Sbjct: 217 TLEGHQDTITGMSLSPDGSYLLTNGMDNKLCVWD 250
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 47.6 bits (108), Expect = 8e-06
Identities = 28/111 (25%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Frame = +1
Query: 178 RVGQPHDQQGARDPAALVLGDDLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELP 357
++ +P ++ +R+ AL + D G Y+A GG+D I+ ++TRE +V+ P
Sbjct: 212 KLREPRNKNHSRESLALAVSSD------GRYLATGGVDRHVHIWDVRTRE-HVQA---FP 261
Query: 358 GHSGYLXC-CRFLDDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSL 507
GH + C C +++ + S D T ++W++ + GH G+++++
Sbjct: 262 GHRNTVSCLCFRYGTSELYSGSFDRTVKVWNVEDKAFITENHGHQGEILAI 312
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 394 DDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCWR 516
D + T D +WD+ T + F GH V LC+R
Sbjct: 233 DGRYLATGGVDRHVHIWDVRTREHVQAFPGHRNTVSCLCFR 273
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSGDMTCE 438
S +Y+A G D+ Y L+ + V GH + +FL +N++ ++S D T
Sbjct: 517 SSNYIAVGSADHHIHYYDLRNISQPLHV---FSGHKKAVSYVKFLSNNELASASTDSTLR 573
Query: 439 LWDIXTXQQCGQFTGHTGD 495
LWD+ F GHT +
Sbjct: 574 LWDVKDNLPVRTFRGHTNE 592
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAP 268
L GH +++ + W D+R L S D +L VW+ H+T V ++ V A++P
Sbjct: 331 LAGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYSEHTAAVKAIAWSPHVH 390
Query: 269 TSLVVDWTTSARFI 310
L T+ R I
Sbjct: 391 GLLASGGGTADRCI 404
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +1
Query: 265 SYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSG-DMTCEL 441
S ++ G D ++ +E +V +L GH + ++ DN+ L S G D +
Sbjct: 305 SVLSSGSRDKSILQRDIRCQEDHVS---KLAGHKSEVCGLKWSYDNRELASGGNDNRLFV 361
Query: 442 WDIXTXQQCGQFTGHTGDVMSLCW 513
W+ + Q +++ HT V ++ W
Sbjct: 362 WNQHSTQPVLKYSEHTAAVKAIAW 385
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +1
Query: 397 DNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCWRRTSA 528
D+ +LT+SGD T ++WD+ + G GHTG V S+C T++
Sbjct: 140 DSCLLTASGDQTIKVWDVEENKCTGVLIGHTGTVKSMCSHPTNS 183
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/83 (25%), Positives = 39/83 (46%)
Frame = +2
Query: 62 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVM 241
R+Q L GH +++ + W D R L S D +L+VW++H+ + + ++ V
Sbjct: 285 RVQSDFVSKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVWNNHSQQPILKLTEHTAAVK 344
Query: 242 TCAYAPRAPTSLVVDWTTSARFI 310
++P + L T+ R I
Sbjct: 345 AITWSPHQSSLLASGGGTADRCI 367
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +2
Query: 32 QATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVH 211
QA + P+ R +T+ GH + + + D + L S S D + +WD +T +
Sbjct: 90 QAVFRIRPVNRCS----QTIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLF 145
Query: 212 AIPLRSSWVMTCAYAP 259
+WV+T A++P
Sbjct: 146 TCKGHKNWVLTVAWSP 161
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 92 RGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
RGH+ +Y + W +DSR L+S S D L +W+ T +P + V ++P
Sbjct: 399 RGHVGPVYQVSWSADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSP 454
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 337 RVSRELPGHSGYLXCCRFLDDN-QILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCW 513
R S+ + GH+ + C F D Q+ + SGD T LWD+ T GH V+++ W
Sbjct: 100 RCSQTIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAW 159
Score = 34.7 bits (76), Expect = 0.058
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTS-SGDMT 432
P G ++A D +++ T + V V R GH G + + D+++L S S D T
Sbjct: 370 PDGKWIASASFDKSVRLWNGITGQF-VTVFR---GHVGPVYQVSWSADSRLLLSGSKDST 425
Query: 433 CELWDIXTXQQCGQFTGHTGDVMSLCW 513
++W+I T + GH +V ++ W
Sbjct: 426 LKIWEIRTKKLKQDLPGHADEVFAVDW 452
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPL--RSSWVMTCAYAP 259
T +GH + + W D ++LVS S G++ W+ ++ PL W+ ++ P
Sbjct: 146 TCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNP-KKGELEGSPLTGHKKWITGISWEP 204
Query: 260 RAPTSLVVDWTTSAR 304
+S + TS++
Sbjct: 205 VHLSSPCRRFVTSSK 219
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 346 RELPGHSGYLXCCRFLDDNQ-ILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCWRRT 522
+ L GH + F D + I ++S D + LW+ T Q F GH G V + W
Sbjct: 354 KRLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRGHVGPVYQVSWSAD 413
Query: 523 S 525
S
Sbjct: 414 S 414
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 542 GACDASAKLWERAGLQVQTDFPGHQSDINAVTXFP 646
G+ D++ K+WE +++ D PGH ++ AV P
Sbjct: 420 GSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSP 454
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 352 LPGHSGYLXCCRFLDDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSL 507
L GH+ + C ++ D I T S D T ++W+ + + GH + SL
Sbjct: 237 LSGHTLAVTCVKWGGDGIIYTGSQDCTIKMWETTQGKLIRELKGHGHWINSL 288
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHW-GSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
R GH + AM W SDS L++ + D + I WD++T V +P ++W + P
Sbjct: 257 REFTGHQRGVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAEIVAELPAGNNWNFDVHWYP 316
Query: 260 RAP 268
+ P
Sbjct: 317 KIP 319
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHW-GSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
R GH + AM W SDS L++ + D + I WD++T V +P ++W + P
Sbjct: 257 REFTGHQRGVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAEIVAELPAGNNWNFDVHWYP 316
Query: 260 RAP 268
+ P
Sbjct: 317 KIP 319
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQIL-TSS 420
LR P G +V GG DNI ++ L ++ E H G + F +L T S
Sbjct: 149 LRFTPDGRWVVSGGEDNIVKVWDLTAG----KLLTEFKSHEGQIQSLDFHPHEFLLATGS 204
Query: 421 GDMTCELWDIXTXQQCGQFTGHTGDVMSLCWRRTSAT 531
D T + WD+ T + G T V L + T
Sbjct: 205 ADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKT 241
Score = 31.1 bits (67), Expect = 0.71
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +1
Query: 253 RPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSGDM- 429
R S + GG D+ +++++ G L GHS + F D +++L ++G
Sbjct: 26 RKSSRVLVTGGEDHKVNLWAI----GKPNAILSLYGHSSGIDSVTF-DASEVLVAAGAAS 80
Query: 430 -TCELWDIXTXQQCGQFTGHTGDVMSL 507
T +LWD+ + TGH + +S+
Sbjct: 81 GTIKLWDLEEAKIVRTLTGHRSNCISV 107
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQIL-TSS 420
LR P G +V GG DNI ++ L ++ E H G + F +L T S
Sbjct: 149 LRFTPDGRWVVSGGEDNIVKVWDLTAG----KLLTEFKSHEGQIQSLDFHPHEFLLATGS 204
Query: 421 GDMTCELWDIXTXQQCGQFTGHTGDVMSLCWRRTSAT 531
D T + WD+ T + G T V L + T
Sbjct: 205 ADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKT 241
Score = 31.1 bits (67), Expect = 0.71
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +1
Query: 253 RPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSGDM- 429
R S + GG D+ +++++ G L GHS + F D +++L ++G
Sbjct: 26 RKSSRVLVTGGEDHKVNLWAI----GKPNAILSLYGHSSGIDSVTF-DASEVLVAAGAAS 80
Query: 430 -TCELWDIXTXQQCGQFTGHTGDVMSL 507
T +LWD+ + TGH + +S+
Sbjct: 81 GTIKLWDLEEAKIVRTLTGHRSNCISV 107
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 41.5 bits (93), Expect = 5e-04
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQ---ILTSSGD 426
P G + +I IYS E ++R E+ H+G + F NQ ++T D
Sbjct: 429 PDGGLLGVAYSKHIVHIYSYHGGE-DLRNHLEIDAHAGNVNDLAFSQPNQQLCVVTCGED 487
Query: 427 MTCELWDIXTXQQCGQFTGHTGDVMSLC 510
T ++WD T + F GH V S+C
Sbjct: 488 KTIKVWDAVTGNKLHTFEGHEAPVYSVC 515
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 41.5 bits (93), Expect = 5e-04
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQ---ILTSSGD 426
P G + +I IYS E ++R E+ H+G + F NQ ++T D
Sbjct: 429 PDGGLLGVAYSKHIVHIYSYHGGE-DLRNHLEIDAHAGNVNDLAFSQPNQQLCVVTCGED 487
Query: 427 MTCELWDIXTXQQCGQFTGHTGDVMSLC 510
T ++WD T + F GH V S+C
Sbjct: 488 KTIKVWDAVTGNKLHTFEGHEAPVYSVC 515
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 41.1 bits (92), Expect = 7e-04
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNV------RVSRELPGHSGYLXCCRFLDDNQILTS 417
PSG G+ N S + T GNV R + L GH+ + C +F +D +L S
Sbjct: 2 PSGGNGTSNGVANANSTGNAGT-SGNVPIYKPYRHLKTLEGHTAAISCVKFSNDGNLLAS 60
Query: 418 SG-DMTCELWDIXTXQQCGQFTGHTGDVMSLCWRRTS 525
+ D T LW ++ GH+ + L W S
Sbjct: 61 ASVDKTMILWSATNYSLIHRYEGHSSGISDLAWSSDS 97
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +2
Query: 29 AQATSNLEPIGRIQM----RTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHT 196
A +T N G + + R +TL GH A I + + +D L SAS D +I+W +
Sbjct: 15 ANSTGNAGTSGNVPIYKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATN 74
Query: 197 TNKVHAIPLRSSWVMTCAYA 256
+ +H SS + A++
Sbjct: 75 YSLIHRYEGHSSGISDLAWS 94
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDS 190
R ++ H I ++H+ D +VSAS DG +WD+
Sbjct: 164 RMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWDA 199
Score = 31.9 bits (69), Expect = 0.41
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 95 GHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNK-VHAIPLRSSWVMTCAYAPRAPT 271
GH + I + W SDS SAS D L +WD+ + + + + +++V + P P+
Sbjct: 83 GHSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNP--PS 140
Query: 272 SLVV 283
+L+V
Sbjct: 141 NLIV 144
Score = 30.7 bits (66), Expect = 0.94
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTN-----KVHAIPLRS 229
+ LRGH ++ +++ S +VS S D + +W+ T K H++P+ S
Sbjct: 122 KVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVKTGKCVRMIKAHSMPISS 175
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTS-S 420
+ P + + G D I+ +KT + R + HS + F D ++ S S
Sbjct: 134 VNFNPPSNLIVSGSFDETIRIWEVKTG----KCVRMIKAHSMPISSVHFNRDGSLIVSAS 189
Query: 421 GDMTCELWD 447
D +C++WD
Sbjct: 190 HDGSCKIWD 198
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +1
Query: 250 LRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQIL-TSSGD 426
L P+ Y+A D I+++ ++ + L GH ++ C F D + L T+S D
Sbjct: 219 LSPANKYLATASSDKTVKIWNVD----GFKLEKVLTGHQRWVWDCVFSVDGEFLVTASSD 274
Query: 427 MTCELWDIXTXQQCGQFTGH 486
MT LW + ++ + GH
Sbjct: 275 MTARLWSMPAGKEVKVYQGH 294
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 349 ELPGHSGYLXCCRFLDDNQIL-TSSGDMTCELWDIXTXQQCGQFTGH 486
+L H+G++ C N+ L T+S D T ++W++ + TGH
Sbjct: 206 KLQAHNGHILKCLLSPANKYLATASSDKTVKIWNVDGFKLEKVLTGH 252
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 346 RELPGHSGYLXCCRFLDDNQI-LTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCW 513
R L GHS ++ D Q L+ S D LWD+ T + +F GHT DV+S+ +
Sbjct: 57 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLATGETTRRFVGHTKDVLSVAF 113
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +2
Query: 77 TRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNK--VHAIPLRSSWVMTCA 250
T R GH + ++ + +D+R +VSAS D + +W++ K + WV
Sbjct: 97 TTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEGDGHKEWVSCVR 156
Query: 251 YAPR--APTSLVVDWTTSAR 304
++P PT + W + +
Sbjct: 157 FSPNTLVPTIVSASWDKTVK 176
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 331 NVRVSRELPGHSGYLXCCRFLDDNQILTSSG-DMTCELWDIXTXQQCGQFTGHTGDVM-S 504
N ++ L GHSGYL D + S G D LWD+ ++ ++ G ++ S
Sbjct: 182 NCKLRNSLVGHSGYLNTVAVSPDGSLCASGGKDGVILLWDLAEGKKL--YSLEAGSIIHS 239
Query: 505 LCW 513
LC+
Sbjct: 240 LCF 242
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +1
Query: 358 GHSGYLXCCRFLDDN---QILTSSGDMTCELWDIXTXQQCGQFTGHTG 492
GH ++ C RF + I+++S D T ++W++ + GH+G
Sbjct: 147 GHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRNSLVGHSG 194
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 80 RRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYA 256
+R L GH + + SD + +S S DG+L +WD T + V++ A++
Sbjct: 56 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLATGETTRRFVGHTKDVLSVAFS 114
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 40.7 bits (91), Expect = 9e-04
Identities = 24/88 (27%), Positives = 40/88 (45%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSG 423
L L P+ V GG D++C ++ ++T+ + V LP S D Q++T S
Sbjct: 260 LALHPTLDVVLTGGRDSVCRVWDIRTKM-QIFV---LPHDSDVFSVLARPTDPQVITGSH 315
Query: 424 DMTCELWDIXTXQQCGQFTGHTGDVMSL 507
D T + WD+ + T H V ++
Sbjct: 316 DSTIKFWDLRYGKSMATITNHKKTVRAM 343
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 346 RELPGHSGYLXCCRFLDDNQ-ILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSL 507
R L GH G++ F N+ T S D T ++WD+ T TGH G V L
Sbjct: 164 RVLQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIGQVRGL 218
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 346 RELPGHSGYLXCCRFLDDNQI-LTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCW 513
R + GHS ++ D Q L+ S D LWD+ T + +F GHT DV+S+ +
Sbjct: 57 RRMTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGESTRRFVGHTKDVLSVAF 113
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +2
Query: 77 TRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNK--VHAIPLRSSWVMTCA 250
TRR + GH + ++ + +D+R +VSAS D + +W++ K + WV
Sbjct: 98 TRRFV-GHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEADGHKEWVSCVR 156
Query: 251 YAPR--APTSLVVDWTTSAR 304
++P PT + W + +
Sbjct: 157 FSPNTLVPTIVSASWDKTVK 176
Score = 30.7 bits (66), Expect = 0.94
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 349 ELPGHSGYLXCCRFLDDN---QILTSSGDMTCELWDIXTXQQCGQFTGHTG 492
E GH ++ C RF + I+++S D T ++W++ + GH+G
Sbjct: 144 EADGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRNTLAGHSG 194
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 331 NVRVSRELPGHSGYLXCCRFLDDNQILTSSG-DMTCELWDIXTXQQCGQFTGHTGDVM-S 504
N ++ L GHSGYL D + S G D LWD+ ++ ++ G ++ S
Sbjct: 182 NCKLRNTLAGHSGYLNTVAVSPDGSLCASGGKDGVILLWDLAEGKKL--YSLEAGSIIHS 239
Query: 505 LCW 513
LC+
Sbjct: 240 LCF 242
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 80 RRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYA 256
+R + GH + + SD + +S S DG+L +WD T + V++ A++
Sbjct: 56 QRRMTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGESTRRFVGHTKDVLSVAFS 114
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAI 217
+ R TL GH + + D S DG +++WD K++++
Sbjct: 184 KLRNTLAGHSGYLNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSL 231
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 352 LPGHSGYLXCCRFLDDNQILTS-SGDMTCELWDIXTXQQCGQFTGHTGDVMS-LCW 513
L GHSG + C F Q+L S S D T ++WD+ T Q HTG V S LCW
Sbjct: 254 LEGHSGEVTC--FAVGGQMLYSGSVDKTIKMWDLNTLQCIMTLKQHTGTVTSLLCW 307
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPL 223
+L GH ++ + S L S S DG L VWD ++ VH+I L
Sbjct: 126 SLEGHNKELKGIALPEGSDKLFSVSIDGTLRVWDCNSGQCVHSINL 171
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQIL-TSS 420
LR P G ++ GG DN+ ++ L ++ E H G + F +L T S
Sbjct: 242 LRFTPDGRWIVSGGEDNVVKVWDLTAG----KLLHEFKSHEGKIQSLDFHPHEFLLATGS 297
Query: 421 GDMTCELWDIXTXQQCGQFTGHTGDVMSL 507
D T + WD+ T + G T V L
Sbjct: 298 ADKTVKFWDLETFELIGSGGTETTGVRCL 326
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +1
Query: 253 RPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSGDM- 429
R S + GG D+ +++++ G L GHS + F D ++ L ++G
Sbjct: 119 RKSSRVLVTGGEDHKVNLWAI----GKPNAILSLYGHSSGIDSVTF-DASEGLVAAGAAS 173
Query: 430 -TCELWDIXTXQQCGQFTGHTGDVMSL 507
T +LWD+ + TGH + +S+
Sbjct: 174 GTIKLWDLEEAKVVRTLTGHRSNCVSV 200
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 542 GACDASAKLWERAGLQVQTDFPGHQSDINAVTXFPVPGFAFATG 673
GA + KLW+ +V GH+S+ +V P F FA+G
Sbjct: 170 GAASGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFGEF-FASG 212
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/58 (22%), Positives = 23/58 (39%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
T +GH + + + D R +VS D + VWD +H + + + P
Sbjct: 231 TYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHP 288
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Frame = +2
Query: 17 DTSLAQATSNLEPIGRI-QMRTRRTL---RGHLAKIYAMHWGSDSRNLVSASXDGKLIVW 184
D +LA A+ L+ + R+ +RT R++ +GH+ ++++++ + +L S D + +W
Sbjct: 392 DGALA-ASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIW 450
Query: 185 DSHTTNKVHAIPLRSSWVMTCAYAPR 262
D ++ IP ++ V Y P+
Sbjct: 451 DLRMRKSLYIIPAHANLVSQVKYEPQ 476
Score = 35.5 bits (78), Expect = 0.033
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRF--LDDNQILTSSGDM 429
P+G ++A GG DN C I+ L+ R+ ++ + +P H+ + ++ + + T+S DM
Sbjct: 433 PNGYHLASGGEDNQCRIWDLRMRK-SLYI---IPAHANLVSQVKYEPQEGYFLATASYDM 488
Query: 430 TCELWDIXTXQQCGQFTGHTGDVMSL 507
+W GH V SL
Sbjct: 489 KVNIWSGRDFSLVKSLAGHESKVASL 514
Score = 34.3 bits (75), Expect = 0.076
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSG-DMT 432
PSG Y+ D ++ + T G + +E GHS + F D + S G D
Sbjct: 349 PSGKYLGTTSYDKTWRLWDINT--GAELLLQE--GHSRSVYGIAFQQDGALAASCGLDSL 404
Query: 433 CELWDIXTXQQCGQFTGHTGDVMSL 507
+WD+ T + F GH V S+
Sbjct: 405 ARVWDLRTGRSILVFQGHIKPVFSV 429
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 358 GHSGYLXCCRFLDDNQIL-TSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCWRRTSA 528
GH L F + L T+S D T LWDI T + GH+ V + +++ A
Sbjct: 337 GHLDRLARVAFHPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGA 394
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQIL-TSS 420
+R P G +V GGLDN+ ++ L ++ E H G + F +L T S
Sbjct: 148 IRFTPDGRWVVSGGLDNVVKVWDLTAG----KLLHEFKFHEGPIRSLDFHPLEFLLATGS 203
Query: 421 GDMTCELWDIXTXQQCGQFTGHTGDVMSL 507
D T + WD+ T + G V S+
Sbjct: 204 ADRTVKFWDLETFELIGSTRPEATGVRSI 232
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/59 (23%), Positives = 24/59 (40%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
+T +GH I + + D R +VS D + VWD +H + + + P
Sbjct: 136 QTYKGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKFHEGPIRSLDFHP 194
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHW-GSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
RT GH + AM W SDS L++ D + I W++ T V +P +W + P
Sbjct: 246 RTFVGHQRGVIAMEWCPSDSLYLLTCGKDNRTICWNTKTGKIVAELPTGQNWNFDVHWYP 305
Query: 260 RAP 268
+ P
Sbjct: 306 KMP 308
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYS-LKTREGNVRVSRELPGHSGYLXCCRF--LDDNQILTSSGDM 429
S +A G +D +++ + + G + R+L H G + F NQ+ + + D
Sbjct: 79 SDGLIAGGLVDGNIGLWNPISSESGEIAHVRDLSKHKGPVRGLEFNVKSPNQLASGADDG 138
Query: 430 TCELWDIXTXQQCGQFTGHTG-----DVMSLCWRR 519
T +WD+ + + TG ++ SL W +
Sbjct: 139 TVCIWDLANPSKPSHYLKGTGSYMQSEISSLSWNK 173
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 358 GHSGYLXCCRF-LDDNQILTSSGDMTCELWDIXTXQQCGQF 477
GHSG + CC D ++++T S D T +LWD+ + ++ F
Sbjct: 77 GHSGAVWCCDISRDSSRLITGSADQTAKLWDVKSGKELFTF 117
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXC-CRFLDDNQILTSSGDMT 432
P + GG D I+ +T + ++ S E GH + C+ DD+ LT S D T
Sbjct: 185 PLNQTIVSGGEDAAIRIWDAETGK-LLKQSDEEVGHKEAITSLCKAADDSHFLTGSHDKT 243
Query: 433 CELWDIXT 456
+LWD+ T
Sbjct: 244 AKLWDMRT 251
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXC-CRFLDDNQILTSSGDMT 432
P + GG D + I+ +T + ++ S E GH + C+ DD+ LT S D T
Sbjct: 158 PLNQTIVSGGEDKVIRIWDAETGK-LLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKT 216
Query: 433 CELWDIXT 456
+LWD+ T
Sbjct: 217 AKLWDMRT 224
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXC-CRFLDDNQILTSSGDMT 432
P + GG D + I+ +T + ++ S E GH + C+ DD+ LT S D T
Sbjct: 158 PLNQTIVSGGEDKVIRIWDAETGK-LLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKT 216
Query: 433 CELWDIXT 456
+LWD+ T
Sbjct: 217 AKLWDMRT 224
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXC-CRFLDDNQILTSSGDMT 432
P + GG D + I+ +T + ++ S E GH + C+ DD+ LT S D T
Sbjct: 158 PLNQTIVSGGEDKVIRIWDAETGK-LLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKT 216
Query: 433 CELWDIXT 456
+LWD+ T
Sbjct: 217 AKLWDMRT 224
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 346 RELPGHSGYLXCCRFLDDNQI-LTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCW 513
R L GHS ++ D Q L+ S D LWD+ +F GHT DV+S+ +
Sbjct: 57 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF 113
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 358 GHSGYLXCCRFLDDN---QILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSL 507
GH ++ C RF + I+++S D T ++W++ + GHTG V ++
Sbjct: 148 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV 200
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRS 229
+ R TL GH + + D S DG +++WD K++++ S
Sbjct: 185 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS 236
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +2
Query: 77 TRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDS 190
TRR + GH + ++ + D+R +VSAS D + +W++
Sbjct: 98 TRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 134
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +1
Query: 202 QGARDPAALVLGDDLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXC 381
+G RD + V L+P+ + D +++L N ++ L GH+GY+
Sbjct: 147 EGHRDWVSCVRFSPNTLQPT---IVSASWDKTVKVWNLS----NCKLRSTLAGHTGYVST 199
Query: 382 CRFLDDNQILTSSG-DMTCELWDI 450
D + S G D LWD+
Sbjct: 200 VAVSPDGSLCASGGKDGVVLLWDL 223
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSG-DMT 432
PSG V G LD+ I+ + G ++ L GH + F Q+L SS D T
Sbjct: 444 PSGDVVCAGTLDSF-EIFVWSKKTGQIKDI--LSGHEAPVHGLMFSPLTQLLASSSWDYT 500
Query: 433 CELWDIXTXQQCGQFTGHTGDVMSLCWR 516
LWD+ + + H DV+++ +R
Sbjct: 501 VRLWDVFASKGTVETFRHNHDVLTVAFR 528
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWD 187
T H + A+H+ +D+ +L+SAS DG + WD
Sbjct: 386 TFTEHTNAVTALHFMADNHSLLSASLDGTVRAWD 419
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 358 GHSGYLXCCRFLDDNQIL-TSSGDMTCELWDIXTXQQCGQFTGHTGDVMSL 507
GH + C + D+Q+L T + D ++W++ + FT HT V +L
Sbjct: 347 GHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTAL 397
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSG-DMT 432
PSG V G LD+ I+ + G ++ L GH + F Q+L SS D T
Sbjct: 484 PSGDVVCAGTLDSF-EIFVWSKKTGQIKDI--LSGHEAPVHGLMFSPLTQLLASSSWDYT 540
Query: 433 CELWDIXTXQQCGQFTGHTGDVMSLCWR 516
LWD+ + + H DV+++ +R
Sbjct: 541 VRLWDVFASKGTVETFRHNHDVLTVAFR 568
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWD 187
T H + A+H+ +D+ +L+SAS DG + WD
Sbjct: 426 TFTEHTNAVTALHFMADNHSLLSASLDGTVRAWD 459
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 358 GHSGYLXCCRFLDDNQIL-TSSGDMTCELWDIXTXQQCGQFTGHTGDVMSL 507
GH + C + D+Q+L T + D ++W++ + FT HT V +L
Sbjct: 387 GHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTAL 437
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 37.5 bits (83), Expect = 0.008
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQ-ILTSS 420
LR GS +A G DN ++ + G R L GH + FLD + +++SS
Sbjct: 112 LRYNKVGSMLASGSKDNDIILWDVVGESGLFR----LRGHRDQVTDLVFLDGGKKLVSSS 167
Query: 421 GDMTCELWDIXTXQQCGQF-TGHTGDVMSL 507
D +WD+ T Q C Q +GH +V S+
Sbjct: 168 KDKFLRVWDLET-QHCMQIVSGHHSEVWSV 196
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 289 DNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSGDMTCELWDIXT 456
+N YSLK+ E V+ E GH + +DN +L S+ ++W+ T
Sbjct: 381 NNSLEFYSLKSSENAKTVTIEHQGHRSDVRSVTLSEDNTLLMSTSHSEVKIWNPST 436
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHT 196
LRGH ++ + + + LVS+S D L VWD T
Sbjct: 144 LRGHRDQVTDLVFLDGGKKLVSSSKDKFLRVWDLET 179
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQ---ILTSSGD 426
P GS +I +YS E ++R E+ H G + F N+ ++T D
Sbjct: 427 PDGSLFGVAYSRHIVQLYSYHGGE-DMRQHLEIDAHVGGVNDISFSTPNKQLCVITCGDD 485
Query: 427 MTCELWDIXTXQQCGQFTGHTGDVMSLC 510
T ++WD T + F GH V S+C
Sbjct: 486 KTIKVWDAATGVKRHTFEGHEAPVYSVC 513
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQ---ILTSSGD 426
P GS +I +YS E ++R E+ H G + F N+ ++T D
Sbjct: 427 PDGSLFGVAYSRHIVQLYSYHGGE-DMRQHLEIDAHVGGVNDISFSTPNKQLCVITCGDD 485
Query: 427 MTCELWDIXTXQQCGQFTGHTGDVMSLC 510
T ++WD T + F GH V S+C
Sbjct: 486 KTIKVWDAATGVKRHTFEGHEAPVYSVC 513
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQIL-TSS 420
+ P G +V GGLDN+ ++ L ++ E H G + F +L T S
Sbjct: 97 IEFSPDGRWVVSGGLDNVVKVWDLTAG----KLLHEFKCHEGPIRSLDFHPLEFLLATGS 152
Query: 421 GDMTCELWDIXTXQQCG 471
D T + WD+ T + G
Sbjct: 153 ADRTVKFWDLETFELIG 169
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSG 423
+ P G ++A G D ++ + ++G ++ + GH+ + F D + + S G
Sbjct: 55 VEFHPFGEFLASGSSDTNLRVWDTR-KKGCIQTYK---GHTRGISTIEFSPDGRWVVSGG 110
Query: 424 -DMTCELWDIXTXQQCGQFTGHTGDVMSL 507
D ++WD+ + +F H G + SL
Sbjct: 111 LDNVVKVWDLTAGKLLHEFKCHEGPIRSL 139
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/59 (23%), Positives = 24/59 (40%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
+T +GH I + + D R +VS D + VWD +H + + + P
Sbjct: 85 QTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKCHEGPIRSLDFHP 143
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 37.1 bits (82), Expect = 0.011
Identities = 27/89 (30%), Positives = 38/89 (42%)
Frame = +1
Query: 241 DLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSS 420
D + P G Y A D I+S+ ++ R + GH + + N I T S
Sbjct: 465 DAQFSPFGHYFASCSHDRTARIWSMD----RIQPLRIMAGHLSDVDW--HPNCNYIATGS 518
Query: 421 GDMTCELWDIXTXQQCGQFTGHTGDVMSL 507
D T LWD+ T + F GH V+SL
Sbjct: 519 SDKTVRLWDVQTGECVRIFIGHRSMVLSL 547
Score = 33.9 bits (74), Expect = 0.10
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +1
Query: 241 DLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSS 420
D+ P+ +Y+A G D ++ ++T E VR+ GH + D + + S
Sbjct: 504 DVDWHPNCNYIATGSSDKTVRLWDVQTGEC-VRI---FIGHRSMVLSLAMSPDGRYMASG 559
Query: 421 G-DMTCELWDIXTXQQCGQFTGHTGDVMSLCW 513
D T +WD+ T + GH V SL +
Sbjct: 560 DEDGTIMMWDLSTARCITPLMGHNSCVWSLSY 591
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYA 256
R GH + + ++ D R + S DG +++WD T + + +S V + +Y+
Sbjct: 535 RIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYS 592
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 37.1 bits (82), Expect = 0.011
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDD-NQILTSSGDMT 432
P +V G D +Y+ T + V+V HS Y+ C +L+SS DM
Sbjct: 67 PRKQWVVAGADDMYIRVYNYNTMD-KVKV---FEAHSDYIRCVAVHPTLPYVLSSSDDML 122
Query: 433 CELWDIXTXQQCGQ-FTGHTGDVMSL 507
+LWD C Q F GH+ VM +
Sbjct: 123 IKLWDWENGWACTQIFEGHSHYVMQV 148
Score = 34.3 bits (75), Expect = 0.076
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +1
Query: 274 ACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFL---DDNQILTSSGDMTCELW 444
A LD I++L + + N L H + C + D ++T S D T ++W
Sbjct: 159 ASASLDRTIKIWNLGSPDPNFT----LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214
Query: 445 DIXTXQQCGQFTGHTGDVMSLCW 513
D T GHT +V ++C+
Sbjct: 215 DYQTKSCVQTLDGHTHNVSAVCF 237
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 37.1 bits (82), Expect = 0.011
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDD-NQILTSSGDMT 432
P +V G D +Y+ T + V+V HS Y+ C +L+SS DM
Sbjct: 67 PRKQWVVAGADDMYIRVYNYNTMD-KVKV---FEAHSDYIRCVAVHPTLPYVLSSSDDML 122
Query: 433 CELWDIXTXQQCGQ-FTGHTGDVMSL 507
+LWD C Q F GH+ VM +
Sbjct: 123 IKLWDWENGWACTQIFEGHSHYVMQV 148
Score = 34.3 bits (75), Expect = 0.076
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +1
Query: 274 ACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFL---DDNQILTSSGDMTCELW 444
A LD I++L + + N L H + C + D ++T S D T ++W
Sbjct: 159 ASASLDRTIKIWNLGSPDPNFT----LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214
Query: 445 DIXTXQQCGQFTGHTGDVMSLCW 513
D T GHT +V ++C+
Sbjct: 215 DYQTKSCVQTLDGHTHNVSAVCF 237
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 37.1 bits (82), Expect = 0.011
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDD-NQILTSSGDMT 432
P +V G D +Y+ T + V+V HS Y+ C +L+SS DM
Sbjct: 67 PRKQWVVAGADDMYIRVYNYNTMD-KVKV---FEAHSDYIRCVAVHPTLPYVLSSSDDML 122
Query: 433 CELWDIXTXQQCGQ-FTGHTGDVMSL 507
+LWD C Q F GH+ VM +
Sbjct: 123 IKLWDWENGWACTQIFEGHSHYVMQV 148
Score = 34.3 bits (75), Expect = 0.076
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +1
Query: 274 ACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFL---DDNQILTSSGDMTCELW 444
A LD I++L + + N L H + C + D ++T S D T ++W
Sbjct: 159 ASASLDRTIKIWNLGSPDPNFT----LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214
Query: 445 DIXTXQQCGQFTGHTGDVMSLCW 513
D T GHT +V ++C+
Sbjct: 215 DYQTKSCVQTLDGHTHNVSAVCF 237
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 95 GHLAKIYAMHWGSDSRNLV-SASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
GH + I + W + NL SA DG+L++WD+ T H + + V ++ P
Sbjct: 215 GHESAIADVSWHMKNENLFGSAGEDGRLVIWDTRTNQMQHQVKVHEREVNYLSFNP 270
>At1g64350.1 68414.m07292 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to nuclear pore protein SEH1 (SP:P53011)
[Saccharomyces cerevisiae]
Length = 326
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 59 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVH 211
GR+ ++ +L GH +++ M W L S DG + +W S+ + H
Sbjct: 266 GRLPVKKVSSLSGHQGEVWQMEWDMSGMTLASTGSDGMVKLWQSNLNGEWH 316
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGH--SGYLXCCRFLDDNQ-ILT 414
+ + P+G+++A LDN IYS + R + + GH +GY F D + +++
Sbjct: 461 ISVHPNGNWLAAQSLDNQILIYSTRER-FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 519
Query: 415 SSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCW 513
G+ C WD + + H G + W
Sbjct: 520 GDGEGKCWFWDWKSCKVFRTLKCHNGVCIGAEW 552
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQ--ILTSSGDM 429
P+G ++A GG DN C I+ L+ R ++ +P H + ++ + + T+S DM
Sbjct: 182 PNGYHLASGGEDNQCRIWDLRMR----KLLYIIPAHVNLVSQVKYEPQERYFLATASHDM 237
Query: 430 TCELWDIXTXQQCGQFTGHTGDVMSL 507
+W GH V SL
Sbjct: 238 NVNIWSGRDFSLVKSLVGHESKVASL 263
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +2
Query: 32 QATSNLEPIGRI-QMRTRRTL---RGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTT 199
+A+S + + R+ +RT R + +GH+ ++ ++ + + +L S D + +WD
Sbjct: 145 KASSGFDSLARVWDLRTARNILIFQGHIKQVLSVDFSPNGYHLASGGEDNQCRIWDLRMR 204
Query: 200 NKVHAIPLRSSWVMTCAYAPR 262
++ IP + V Y P+
Sbjct: 205 KLLYIIPAHVNLVSQVKYEPQ 225
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 36.7 bits (81), Expect = 0.014
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 349 ELPGHSGYLXCCRFLDDNQILTSSGDMTCELWDIXT 456
EL GH + C + L ++LT++ D T ++WD+ T
Sbjct: 934 ELKGHDSQVSCVKMLSGERVLTAAHDGTVKMWDVRT 969
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSGDMTCE 438
S +A G D + +I+ + R G + +L GH+ ++ R ++D ++T S D T
Sbjct: 991 STGILAAAGRDTVANIWDI--RSG--KQMHKLKGHTKWIRSIRMVEDT-LITGSDDWTAR 1045
Query: 439 LWDIXTXQQCGQFTGHTGDVMSL 507
+W + H G V S+
Sbjct: 1046 VWSVSRGSCDAVLACHAGPVQSV 1068
Score = 33.9 bits (74), Expect = 0.10
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +1
Query: 253 RPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSGDMT 432
R + G D + I+ R +R + L GH+G + D +I++ S D++
Sbjct: 864 REDAGFFISGSTDCLVKIWDPSLRGSELRAT--LKGHTGTVRAISS-DRGKIVSGSDDLS 920
Query: 433 CELWDIXTXQQCGQFTGHTGDV 498
+WD T Q + GH V
Sbjct: 921 VIVWDKQTTQLLEELKGHDSQV 942
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 394 DDNQILTSSG-DMTCELWDIXTXQQCGQFTGHTGDVMSL 507
D IL ++G D +WDI + +Q + GHT + S+
Sbjct: 990 DSTGILAAAGRDTVANIWDIRSGKQMHKLKGHTKWIRSI 1028
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 36.3 bits (80), Expect = 0.019
Identities = 24/95 (25%), Positives = 39/95 (41%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSG 423
L+ G Y+ G +D ++ +K E ++ HSG + ++ TSS
Sbjct: 371 LKWNKKGDYLLTGSVDRTAVVWDVKAEEWK----QQFEFHSGPTLDVDWRNNVSFATSST 426
Query: 424 DMTCELWDIXTXQQCGQFTGHTGDVMSLCWRRTSA 528
D L I + FTGH G+V + W T +
Sbjct: 427 DSMIYLCKIGETRPAKTFTGHQGEVNCVKWDPTGS 461
Score = 35.9 bits (79), Expect = 0.025
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRF-LDDNQILTSSGDMTCE 438
G+ +A G D I++L N + L H G + ++ + +LT S D T
Sbjct: 336 GTLLATGSCDGQARIWTL-----NGELISTLSKHKGPIFSLKWNKKGDYLLTGSVDRTAV 390
Query: 439 LWDIXTXQQCGQFTGHTGDVMSLCWR 516
+WD+ + QF H+G + + WR
Sbjct: 391 VWDVKAEEWKQQFEFHSGPTLDVDWR 416
Score = 34.3 bits (75), Expect = 0.076
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = +2
Query: 68 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTC 247
+ R +T GH ++ + W L S S D +W+ + VH + + + T
Sbjct: 437 ETRPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQSTFVHDLREHTKEIYTI 496
Query: 248 AYAPRAP 268
++P P
Sbjct: 497 RWSPTGP 503
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSG 423
L P+G Y+A G LD I+S+K EG ++ + G+ G C + N+I
Sbjct: 547 LAFSPNGEYIASGSLDKSIHIWSIK--EG--KIVKTYTGNGGIFEVCWNKEGNKIAACFA 602
Query: 424 D 426
D
Sbjct: 603 D 603
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWD 187
TL H I+++ W L++ S D +VWD
Sbjct: 360 TLSKHKGPIFSLKWNKKGDYLLTGSVDRTAVVWD 393
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVW 184
R L GH +++ A W + L S S D +W
Sbjct: 259 RILEGHTSEVCACAWSPSASLLASGSGDATARIW 292
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 406 ILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCWRRTSATF 534
I+T S D T LW+ + G TGH GD++++ + + S +F
Sbjct: 419 IVTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSF 461
Score = 34.3 bits (75), Expect = 0.076
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +1
Query: 265 SYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQ-ILTSSGDMTCEL 441
S V G D SI+ L V L GH + F +Q ++T+SGD T ++
Sbjct: 512 SLVCTGSEDRTASIWRLPDLVHVVT----LKGHKRRIFSVEFSTVDQCVMTASGDKTVKI 567
Query: 442 WDIXTXQQCGQFTGHTGDVM 501
W I F GHT V+
Sbjct: 568 WAISDGSCLKTFEGHTSSVL 587
Score = 32.7 bits (71), Expect = 0.23
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSG-DMTCE 438
GS++AC D I + S + V + G S L D+++L S+G
Sbjct: 31 GSFIACACGDVINIVDSTDSS-----VKSTIEGESDTLTALALSPDDKLLFSAGHSRQIR 85
Query: 439 LWDIXTXQQCGQFTGHTGDVMSL 507
+WD+ T + + GH G VM +
Sbjct: 86 VWDLETLKCIRSWKGHEGPVMGM 108
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTT 199
+T GH + + + +D VS DG L +W+ +T+
Sbjct: 577 KTFEGHTSSVLRASFITDGTQFVSCGADGLLKLWNVNTS 615
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 337 RVSRELPGHSGYLXCCRFLDDNQILTSSG-DMTCELWDIXTXQQCGQFTGHTGDVMSLCW 513
+V R GH + C +L + G D C +WDI T Q +GH V S+
Sbjct: 251 KVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQIFALSGHDNTVCSVFT 310
Query: 514 RRT 522
R T
Sbjct: 311 RPT 313
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 346 RELPGHSGYLXCCRFLDDNQ-ILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSL 507
R + GH G++ F N+ T S D T ++WD+ T TGH V L
Sbjct: 170 RVIQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGL 224
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/80 (22%), Positives = 33/80 (41%)
Frame = +2
Query: 68 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTC 247
Q + R+ GHL+ +Y + L++ D VWD T ++ A+ + V +
Sbjct: 249 QNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQIFALSGHDNTVCSV 308
Query: 248 AYAPRAPTSLVVDWTTSARF 307
P P + T+ +F
Sbjct: 309 FTRPTDPQVVTGSHDTTIKF 328
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 36.3 bits (80), Expect = 0.019
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQ---ILTSSGD 426
P GS +I +YS E ++R E+ H G + F N+ + T D
Sbjct: 427 PDGSLFGVAYSRHIVQLYSYHGGE-DMRQHLEIDAHVGGVNDIAFSTPNKQLCVTTCGDD 485
Query: 427 MTCELWDIXTXQQCGQFTGHTGDVMSLC 510
T ++WD T + F GH V S+C
Sbjct: 486 KTIKVWDAATGVKRYTFEGHEAPVYSIC 513
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 36.3 bits (80), Expect = 0.019
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQ---ILTSSGD 426
P GS +I +YS E ++R E+ H G + F N+ + T D
Sbjct: 427 PDGSLFGVAYSRHIVQLYSYHGGE-DMRQHLEIDAHVGGVNDIAFSTPNKQLCVTTCGDD 485
Query: 427 MTCELWDIXTXQQCGQFTGHTGDVMSLC 510
T ++WD T + F GH V S+C
Sbjct: 486 KTIKVWDAATGVKRYTFEGHEAPVYSIC 513
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 29.5 bits (63), Expect(2) = 0.023
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 346 RELPGHSGYLXCCRFLDDNQILTSSGDMTCELW 444
+EL GH+G + + D N +L++S D T LW
Sbjct: 266 QELYGHTGDVLDLAWSDSNLLLSASKDKTVRLW 298
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASXDGKLIVW 184
+ GH KI+ + + D + L + DG + +W
Sbjct: 194 INGHKGKIWTLKFSPDGKYLATGGEDGVVKIW 225
Score = 25.4 bits (53), Expect(2) = 0.023
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSL 315
L+ P G Y+A GG D + I+ +
Sbjct: 204 LKFSPDGKYLATGGEDGVVKIWRI 227
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 68 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTC 247
++ + L GH + A+ W S+ L+S S D ++ +W+ + +H+I + + C
Sbjct: 39 RLSQEQELEGHQGCVNALAWNSNGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANIFC 98
Query: 248 A-YAPRAPTSLVV 283
+ P LVV
Sbjct: 99 TKFVPETSDELVV 111
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 35.9 bits (79), Expect = 0.025
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHT 196
TLRGH A + ++W D L S S D + +W+ T
Sbjct: 113 TLRGHTADVVDLNWSPDDSMLASGSLDNTVHIWNMRT 149
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVH 211
LRGHL+ + + W + S S D +I+W + H
Sbjct: 156 LRGHLSLVKGVTWDPIGSFIASQSDDKTVIIWRTSDWGMAH 196
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +1
Query: 250 LRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSGD 426
++P+G A GG D+ L+ + R+ L H G + C R+ +++ + S D
Sbjct: 21 VQPNGERFATGGGDHKSVDKDLQNIDTKERLLATLRDHFGSVNCVRWAKNSRYVASGSD 79
>At1g03110.1 68414.m00288 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat domain 4 protein (GI:9955698) [Mus
musculus]
Length = 427
Score = 35.9 bits (79), Expect = 0.025
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLD-NI-CSIYSLKTREGNVRVSRELPGHSGYLXCCRF-----LDDN 402
L P G Y+ D I +++ K EG + GHS ++ C F L
Sbjct: 161 LEFSPDGRYILSADRDFKIRVTVFPKKPLEGAHEIQSFCLGHSEFITCTAFVSTPELTQG 220
Query: 403 QILTSSGDMTCELWDI 450
+++ SGD T LWDI
Sbjct: 221 YLMSGSGDSTVRLWDI 236
>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to photomorphogenesis repressor PnCOP1
(GI:11127996) [Ipomoea nil]
Length = 385
Score = 35.5 bits (78), Expect = 0.033
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSGDMTCEL 441
GS +A G D +Y ++ + V L GH+ + RF+D + I+T S D + +
Sbjct: 225 GSSIAVGCADRNAYVYDIRRLVDPLIV---LDGHTKTVTYARFMDSHTIVTGSTDGSLKQ 281
Query: 442 WDIXTXQQCGQ-FTGH 486
WDI ++ + + GH
Sbjct: 282 WDIDNGRRVVRTYRGH 297
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 35.1 bits (77), Expect = 0.044
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +2
Query: 62 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWD------SHTTNKVHAIPL 223
RI+ T RGH ++ + W + L S D + +WD + TT +H +
Sbjct: 253 RIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEE 312
Query: 224 RSSWVMTCAYAP 259
+S V A+ P
Sbjct: 313 HTSAVKALAWCP 324
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 35.1 bits (77), Expect = 0.044
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +2
Query: 62 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWD------SHTTNKVHAIPL 223
RI+ T RGH ++ + W + L S D + +WD + TT +H +
Sbjct: 243 RIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEE 302
Query: 224 RSSWVMTCAYAP 259
+S V A+ P
Sbjct: 303 HTSAVKALAWCP 314
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 35.1 bits (77), Expect = 0.044
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSGDMTCE 438
SG +A G D+ +Y R + + + GHS + +F+D + +++SS D T +
Sbjct: 672 SGRSLAFGSADH--KVYYYDLRNPKIPLCTMI-GHSKTVSYVKFVDSSTLVSSSTDNTLK 728
Query: 439 LWDI------XTXQQCGQFTGHT 489
LWD+ FTGHT
Sbjct: 729 LWDLSMSASGINESPLHSFTGHT 751
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 35.1 bits (77), Expect = 0.044
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 250 LRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQIL-TSSGD 426
+ P+ Y LD Y L + +VS + F D IL T +
Sbjct: 317 VHPTNKYFVSASLDGTWCFYDLSSGSCLAQVSDDSKNVD--YTAAAFHPDGLILGTGTSQ 374
Query: 427 MTCELWDIXTXQQCGQFTGHTGDVMSL 507
++WD+ + +F GHTG+V ++
Sbjct: 375 SVVKIWDVKSQANVAKFDGHTGEVTAI 401
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQ-ILTSSGDMTC 435
S +A GG+D ++ + + + L GHS + +F+ D+ +LT+S D T
Sbjct: 233 SKDVIATGGVDATAVLFDRPSGQ----ILSTLTGHSKKVTSVKFVGDSDLVLTASADKTV 288
Query: 436 ELW 444
+W
Sbjct: 289 RIW 291
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSGDMTC 435
P G + G ++ I+ +K+ + NV + GH+G + F ++ L ++ +
Sbjct: 363 PDGLILGTGTSQSVVKIWDVKS-QANVA---KFDGHTGEVTAISFSENGYFLATAAEDGV 418
Query: 436 ELWDI 450
LWD+
Sbjct: 419 RLWDL 423
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 35.1 bits (77), Expect = 0.044
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 250 LRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQIL-TSSGD 426
+ P+ Y LD Y L + +VS + F D IL T +
Sbjct: 317 VHPTNKYFVSASLDGTWCFYDLSSGSCLAQVSDDSKNVD--YTAAAFHPDGLILGTGTSQ 374
Query: 427 MTCELWDIXTXQQCGQFTGHTGDVMSL 507
++WD+ + +F GHTG+V ++
Sbjct: 375 SVVKIWDVKSQANVAKFDGHTGEVTAI 401
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQ-ILTSSGDMTC 435
S +A GG+D ++ + + + L GHS + +F+ D+ +LT+S D T
Sbjct: 233 SKDVIATGGVDATAVLFDRPSGQ----ILSTLTGHSKKVTSVKFVGDSDLVLTASADKTV 288
Query: 436 ELW 444
+W
Sbjct: 289 RIW 291
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSGDMTC 435
P G + G ++ I+ +K+ + NV + GH+G + F ++ L ++ +
Sbjct: 363 PDGLILGTGTSQSVVKIWDVKS-QANVA---KFDGHTGEVTAISFSENGYFLATAAEDGV 418
Query: 436 ELWDI 450
LWD+
Sbjct: 419 RLWDL 423
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 35.1 bits (77), Expect = 0.044
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 268 YVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDD-NQILTSSGDMTCELW 444
+V G D +Y+ T + V+V HS Y+ C +L+SS DM +LW
Sbjct: 71 WVVAGADDMYIRVYNYNTMD-KVKV---FEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
Query: 445 DIXTXQQCGQ-FTGHTGDVMSL 507
D C Q F GH+ VM +
Sbjct: 127 DWEKGWACTQIFEGHSHYVMQV 148
Score = 34.3 bits (75), Expect = 0.076
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +1
Query: 274 ACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFL---DDNQILTSSGDMTCELW 444
A LD I++L + + N L H + C + D ++T S D T ++W
Sbjct: 159 ASASLDRTIKIWNLGSPDPNFT----LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214
Query: 445 DIXTXQQCGQFTGHTGDVMSLCW 513
D T GHT +V ++C+
Sbjct: 215 DYQTKSCVQTLEGHTHNVSAVCF 237
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 34.7 bits (76), Expect = 0.058
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVS-RELPGHSGYLXCCRFLDDNQ-ILTS 417
++ G +A D Y++ T + +E GH + F D + I+++
Sbjct: 30 VKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAFSSDARFIVSA 89
Query: 418 SGDMTCELWDIXTXQQCGQFTGHT 489
S D T +LWD+ T GHT
Sbjct: 90 SDDKTLKLWDVETGSLIKTLIGHT 113
Score = 34.3 bits (75), Expect = 0.076
Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCR----FLDDNQIL 411
+R P+G ++ G LDN ++++ + + + GH C + +I+
Sbjct: 204 VRFSPNGKFILVGTLDNTLRLWNISS----AKFLKTYTGHVNAQYCISSAFSVTNGKRIV 259
Query: 412 TSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCWRRT 522
+ S D +W++ + + + GHT VM++ T
Sbjct: 260 SGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPT 296
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 95 GHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRA 265
GH I + + SD+R +VSAS D L +WD T + + + +++ + P++
Sbjct: 69 GHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQS 125
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRS 229
+TL GH + +++ S +VS S D + +WD T + +P S
Sbjct: 107 KTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHS 155
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 34.7 bits (76), Expect = 0.058
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Frame = +1
Query: 238 DDLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFL--DDNQIL 411
+D+ P+ + C D+ C I R G V++ H L C + DDN IL
Sbjct: 296 EDVAFSPTSAQEFCSVGDDSCLIL-WDARTGTNPVTKVEKAHDADLHCVDWNPHDDNLIL 354
Query: 412 TSSGDMTCELWDIXTXQQCG------QFTGHTGDVMSLCW 513
T S D T L+D G +F GH V+ + W
Sbjct: 355 TGSADNTVRLFDRRKLTANGVGSPIYKFEGHKAAVLCVQW 394
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 95 GHLAKIYAMHWGSDSRNLV-SASXDGKLIVWDSHTTNK 205
GH A + + W D ++ S++ DG L +WD +K
Sbjct: 384 GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDRVSK 421
>At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 447
Score = 34.7 bits (76), Expect = 0.058
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = +1
Query: 238 DDLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQIL-T 414
+++ P G VA G C L G+ +V L GH Y + + QIL T
Sbjct: 281 NNISTSPDGKLVAVLGDSPEC----LLADTGSGKVIHGLEGHLDYSFSSAWHPNGQILAT 336
Query: 415 SSGDMTCELWDIXTXQQCGQ-FTGHTGDVMSL 507
+ D TC LWD+ Q + G+ G + +L
Sbjct: 337 GNQDTTCRLWDVRNLSQSLKVLKGNMGAIRAL 368
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 34.3 bits (75), Expect = 0.076
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTS-SGDMTC 435
SG YV G D + I+S++T GH G + +N ++ S S D
Sbjct: 316 SGRYVITGSDDRLVKIWSMET----ALCLASCRGHEGDITDLAVSSNNALVASASNDFVI 371
Query: 436 ELWDIXTXQQCGQFTGHTGDVMSLCWRRTSAT 531
+W + GHTG V ++ + A+
Sbjct: 372 RVWRLPDGMPISVLRGHTGAVTAIAFSPRQAS 403
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 346 RELPGHSGYLXCCRF-LDDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSL 507
++L GH + C F ++T S D ++W + T GH GD+ L
Sbjct: 299 KKLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETALCLASCRGHEGDITDL 353
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +1
Query: 241 DLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDN----QI 408
DL + + + VA D + ++ L + +S L GH+G + F Q+
Sbjct: 352 DLAVSSNNALVASASNDFVIRVWRLPD---GMPIS-VLRGHTGAVTAIAFSPRQASVYQL 407
Query: 409 LTSSGDMTCELWD 447
L+SS D TC +WD
Sbjct: 408 LSSSDDGTCRIWD 420
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGS-DSRNLVSASXDGKLIVWDSH 193
R R TL GH K+ A+ SR++VSA+ D + +WD H
Sbjct: 306 RVRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLH 346
Score = 31.1 bits (67), Expect = 0.71
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Frame = +1
Query: 250 LRPSGSYVACGGLDNICSIYSLKTRE--GNVRVSRELPGHSGYLXCCRFLDDNQILTSSG 423
L +G+ + G DN+ +++ +T E G +R S S + C DD+ + S
Sbjct: 407 LSRNGNRILTSGRDNVHNVFDTRTLEICGTLRASGNRLA-SNWSRSCISPDDDYVAAGSA 465
Query: 424 DMTCELWDIXTXQQCGQFTGHTGDVMSLCW 513
D + +W + T ++ W
Sbjct: 466 DGSVHVWSLSKGNIVSILKEQTSPILCCSW 495
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFL-DDNQILTSSGDMTCE 438
G V G +D ++ ++T ++ E+ GHS + + N+ILTS D
Sbjct: 369 GLTVFSGHMDGNLRLWDIQTG----KLLSEVAGHSSAVTSVSLSRNGNRILTSGRDNVHN 424
Query: 439 LWDIXTXQQCGQFTGHTGDVMSLCWRRT 522
++D T + CG +G+ ++ W R+
Sbjct: 425 VFDTRTLEICGTLRA-SGNRLASNWSRS 451
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 382 CRFLDDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCWRR 519
C +D + + D LWDI T + + GH+ V S+ R
Sbjct: 364 CLSIDGLTVFSGHMDGNLRLWDIQTGKLLSEVAGHSSAVTSVSLSR 409
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +2
Query: 98 HLAKIYAMHWGSDSR-NLVSASXDGKLIVWDSHT---TNKVHAIPL 223
H + I A W S +L+SAS DGK+++WD T T H+ PL
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDLRTAVMTKHTHSFPL 402
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSG-DMTC 435
SG+ + G DN+C ++ + G + + L GH + D + S+G D T
Sbjct: 283 SGNLILSGSDDNLCKVWDRRCFIGRDKPAGVLVGHLEGVTFIDSRGDGRYFISNGKDQTI 342
Query: 436 ELWDI 450
+LWDI
Sbjct: 343 KLWDI 347
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 33.9 bits (74), Expect = 0.10
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 271 VACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSG-DMTCELWD 447
VA GG D+ ++ + GN + ELPGH + C F D Q+L S G D +++D
Sbjct: 86 VATGGGDDKAFLWKI----GNGDWAAELPGHKDSVSCLAFSYDGQLLASGGLDGVVQIFD 141
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Frame = +1
Query: 358 GHSG--YLXCCRFLDDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCW 513
GH G Y C D + T GD LW I + GH V L +
Sbjct: 68 GHKGELYALACSPTDATLVATGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAF 121
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 65 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVH 211
+Q T R + H + ++ W S+ L + +G + +WDS N VH
Sbjct: 316 LQHSTPRFICEHEEGVTSLTWIGTSKYLATGCANGTVSIWDSLLGNCVH 364
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +2
Query: 95 GHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAI 217
GH + + D + + + S D LIVW+ T +H +
Sbjct: 195 GHNLNVTCGDFTPDGKLICTGSDDASLIVWNPKTCESIHIV 235
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWD--SHTTNKVHAIPLRSSWVMT 244
R R RGH ++ A+ + S +VSA D L VWD SH+ V I VM+
Sbjct: 93 RVIRKFRGHDGEVNAVKFNDSSSVVVSAGFDRSLRVWDCRSHSVEPVQIIDTFLDTVMS 151
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 394 DDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCWRRTSA 528
D+ + + GD WD+ T + +F GH G+V ++ + +S+
Sbjct: 71 DNAKFCSCGGDRQVYYWDVSTGRVIRKFRGHDGEVNAVKFNDSSS 115
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLX--CCRFLDDNQILTSSGDMT 432
+G+ +A G +D I++++ + EL GH+ + C + + T+SGD +
Sbjct: 31 NGTKLASGSVDQTARIWNIEPHGHSKAKDLELKGHTDSVDQLCWDPKHSDLVATASGDKS 90
Query: 433 CELWDIXTXQQCGQFTGHTGDVMSLCWR 516
LWD + +C Q +G+ +++ ++
Sbjct: 91 VRLWDARSG-KCTQQVELSGENINITYK 117
Score = 30.7 bits (66), Expect = 0.94
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVW--DSHTTNKVHAIPLR 226
R +GH K++++ W S+ L S S D +W + H +K + L+
Sbjct: 14 REYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDLELK 63
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Frame = +1
Query: 343 SRELPGHSGYLXCCRFLDDNQILTS-SGDMTCELWDIXTXQQCG----QFTGHTGDVMSL 507
SRE GH + + + L S S D T +W+I + GHT V L
Sbjct: 13 SREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDLELKGHTDSVDQL 72
Query: 508 CW 513
CW
Sbjct: 73 CW 74
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +1
Query: 289 DNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSGDMTCELWDIXTXQQC 468
D+ C ++ K + E GH+G + + DN +L++S D T LW + +
Sbjct: 303 DSACVVFPPKVFRIMEKPLYEFRGHTGEVLDISWSKDNYLLSASMDKTVRLWKVGSNDCL 362
Query: 469 GQFTGHTGDVMSL 507
G F H V S+
Sbjct: 363 GVF-AHNSYVTSV 374
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 361 HSGYLXCCRFLDDNQILTS-SGDMTCELWDIXTXQQCGQFTGHTGDVMS-LCW 513
HSG + C F+ ++L S S D T ++WD+ T Q H G V S LCW
Sbjct: 311 HSGEVTC--FVVGGEVLYSGSVDKTIKVWDLNTLQCRMTLKQHIGTVTSLLCW 361
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRS 229
L GH I + S L S S DG L++WD ++ V +I L++
Sbjct: 183 LEGHKNDIKGIALPQGSDKLFSVSGDGTLLIWDCNSGQCVRSINLQA 229
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 352 LPGHSGYLXCCRFLDDNQILTSSGDMTCELWDI 450
L GH+ + +FLD+ ++T+S D T +LWD+
Sbjct: 878 LSGHNKAVSYAKFLDNETLVTASTDNTLKLWDL 910
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 65 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWD 187
+ ++ R RGH +I + + D + ++S+S DG L +WD
Sbjct: 545 VTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRIWD 585
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 289 DNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSG-DMTCELWDIXTXQQ 465
DN ++ T +G+ R+ R GHS C RF + + + S+G D L+ + QQ
Sbjct: 289 DNSLKMWIFDTNDGDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSVIQEQQ 348
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 406 ILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCW 513
+ T + D L+D+ T + +F GHT + LC+
Sbjct: 530 LATVADDFVIRLYDVVTLKMVREFRGHTDRITDLCF 565
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 33.5 bits (73), Expect = 0.13
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 268 YVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDD-NQILTSSGDMTCELW 444
+V G D +Y+ T + ++V H+ Y+ C +L+SS DM +LW
Sbjct: 71 WVVAGADDMFIRVYNYNTMD-KIKV---FEAHADYIRCVAVHPTLPYVLSSSDDMLIKLW 126
Query: 445 DIXTXQQCGQ-FTGHTGDVMSL 507
D C Q F GH+ VM +
Sbjct: 127 DWEKGWLCTQIFEGHSHYVMQV 148
Score = 31.5 bits (68), Expect = 0.54
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +1
Query: 274 ACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFL---DDNQILTSSGDMTCELW 444
A LD I++L + + N + L G + C + D ++T S D T ++W
Sbjct: 159 ASASLDRTIKIWNLGSPDPNFTLDAHLKG----VNCVDYFTGGDKPYLITGSDDHTAKVW 214
Query: 445 DIXTXQQCGQFTGHTGDVMSL 507
D T GHT +V ++
Sbjct: 215 DYQTKSCVQTLEGHTHNVSAV 235
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +2
Query: 86 TLRGHLAKIYAMHW--GSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 259
TL HL + + + G D L++ S D VWD T + V + + V ++ P
Sbjct: 180 TLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHP 239
Query: 260 RAP 268
P
Sbjct: 240 ELP 242
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAY 253
+ ++L H + + W D L+S S D I+WD + + + +V A+
Sbjct: 44 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 103
Query: 254 APRA 265
P A
Sbjct: 104 DPLA 107
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAY 253
+ ++L H + + W D L+S S D I+WD + + + +V A+
Sbjct: 103 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 162
Query: 254 APRA 265
P A
Sbjct: 163 DPLA 166
Score = 31.5 bits (68), Expect = 0.54
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNV--RVSRELPGHSGYLXCCRFL-DDNQILT 414
+R PSG +A G I+ L E N +V + L H + ++ DD +++
Sbjct: 70 IRFSPSGELLASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLIS 129
Query: 415 SSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCW 513
S D +C +WD+ H V + W
Sbjct: 130 GSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 162
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAY 253
+ ++L H + + W D L+S S D I+WD + + + +V A+
Sbjct: 103 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 162
Query: 254 APRA 265
P A
Sbjct: 163 DPLA 166
Score = 31.5 bits (68), Expect = 0.54
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNV--RVSRELPGHSGYLXCCRFL-DDNQILT 414
+R PSG +A G I+ L E N +V + L H + ++ DD +++
Sbjct: 70 IRFSPSGELLASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLIS 129
Query: 415 SSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCW 513
S D +C +WD+ H V + W
Sbjct: 130 GSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 162
>At5g23730.1 68418.m02782 transducin family protein / WD-40 repeat
family protein contains similarity to photomorphogenesis
repressor protein; contains Pfam PF00400: WD domain,
G-beta repeat (5 copies)
Length = 243
Score = 33.1 bits (72), Expect = 0.18
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +1
Query: 256 PSGS-YVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSGDMT 432
PSG VA G D +Y ++ V + L GH+ + RFLD ++T+ D
Sbjct: 79 PSGGPAVAVGCADRKGYVYDIRKL---VDPALTLQGHTKTVSYVRFLDGGTVVTAGTDGC 135
Query: 433 CELWDIXTXQQCGQFTGHTGD 495
+LW + + + GH +
Sbjct: 136 LKLWSVEDGRVIRTYEGHVNN 156
>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
trafficking regulator - Bos taurus, EMBL: AF114785
Length = 3471
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 53 PIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIP 220
P G ++R ++L H AK+ + + S+S D +I+WD + + V +P
Sbjct: 3308 PRGSRRLRLEKSLCAHTAKVICLRVSQPYMMIASSSDDCTVIIWDLSSLSFVRQLP 3363
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 33.1 bits (72), Expect = 0.18
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDN-QILTSS 420
+R P GS D IY KT E +S + GH G + + D Q+LT S
Sbjct: 193 VRFAPDGSKFITVSSDKKGIIYDGKTCEILGELSSD-DGHKGSIYAVSWSPDGKQVLTVS 251
Query: 421 GDMTCELWDI 450
D + ++WDI
Sbjct: 252 ADKSAKIWDI 261
Score = 32.7 bits (71), Expect = 0.23
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 95 GHLAKIYAMHWGSDSRNLVSASXDGKLIVWD 187
GH IYA+ W D + +++ S D +WD
Sbjct: 230 GHKGSIYAVSWSPDGKQVLTVSADKSAKIWD 260
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSGDMTC 435
P+ + VA G LD +Y + + + R++ + H G + F DD+ +++S D
Sbjct: 544 PNSTMVATGSLDTCVIVYEVD-KPASSRMTIK-GAHLGGVYGLGFADDSHVVSSGEDACI 601
Query: 436 ELW 444
+W
Sbjct: 602 RVW 604
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 95 GHLAKIYAMHWGSDSRNLVSASXDGKLIVWD 187
GH IYA+ W DS+ +++ S D VW+
Sbjct: 94 GHKGSIYAVSWSPDSKRVLTVSADKSAKVWE 124
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = +1
Query: 238 DDLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTS 417
+ L P+ VA G +D +Y + + +R H G + F+DD + +S
Sbjct: 403 NSLAWSPNNKMVATGSIDTCVIVYEVDKPASSRITARN--AHLGGVNAVAFIDDCTVASS 460
Query: 418 SGDMTCELWDI 450
D + LW I
Sbjct: 461 GEDASVRLWHI 471
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQ-ILTSS 420
+R P G+ D IY KT + ++ E GH G + + D++ +LT S
Sbjct: 57 IRYSPDGTKFITVSSDKKGMIYDGKTGDKVGELASE-DGHKGSIYAVSWSPDSKRVLTVS 115
Query: 421 GDMTCELWDI 450
D + ++W++
Sbjct: 116 ADKSAKVWEV 125
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 32.7 bits (71), Expect = 0.23
Identities = 34/137 (24%), Positives = 50/137 (36%), Gaps = 8/137 (5%)
Frame = +1
Query: 127 GQRFQELGVGQSXW*ADRVGQPHDQQGARDPAALVLGDDLRLRPSGSYVACGGLDNICSI 306
G F++ G G VG G +D +D+ PS + C D+ C +
Sbjct: 253 GSSFKQTGEGSDKTGGPSVGPRGIYNGHKDTV-----EDVAFCPSSAQEFCSVGDDSC-L 306
Query: 307 YSLKTREGNVRVSRELPGHSGYLXCCRFL--DDNQILTSSGDMTCELWDIXTXQQCG--- 471
R G + H L C + D+N ILT S D T ++D G
Sbjct: 307 MLWDARTGTSPAMKVEKAHDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGS 366
Query: 472 ---QFTGHTGDVMSLCW 513
+F GH V+ + W
Sbjct: 367 PVYKFEGHRAAVLCVQW 383
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 95 GHLAKIYAMHWGSDSRNLV-SASXDGKLIVWDSHTTNK 205
GH A + + W D ++ S++ DG L +WD K
Sbjct: 373 GHRAAVLCVQWSPDKSSVFGSSAEDGLLNIWDCDRVGK 410
>At1g12910.1 68414.m01499 flower pigmentation protein (AN11)
contains 3 WD-40 repeats (PF00400); identical to
GB:AAC18912 from [Arabidopsis thaliana] (Genes Dev. 11
(11), 1422-1434 (1997))
Length = 346
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 394 DDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCW 513
+ +I TSS D TC +WDI Q H +V + W
Sbjct: 147 EPRRIGTSSTDTTCTIWDIEREAVDTQLIAHDKEVFDIAW 186
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 343 SRELPGHSGYLXCCRFLDDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSL-CW 513
S L GH+ ++ N++ + S D T ++W + Q T H+ VMSL CW
Sbjct: 267 SASLTGHT-LAVVTLYVGANRLYSGSMDKTIKVWSLDNLQCIQTLTDHSSVVMSLICW 323
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 31.9 bits (69), Expect = 0.41
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = +1
Query: 301 SIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQ-ILTSSGDMTCELWDIXTXQQCGQF 477
+IY L G + L G F D + +L+ SGD T W+I + ++
Sbjct: 223 NIYVLDAYRGEKKCGFSLEPSQGTPIEATFTPDGKYVLSGSGDGTLHAWNIENPSEVARW 282
Query: 478 TGHTGDVMSLCWRRTSATF 534
+ G V L W A F
Sbjct: 283 ENNIGVVSCLKWAPRRAMF 301
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFL-DDNQILTSS 420
L+ +G Y+A D I+ + +G++ + L GH + + DD Q+LT
Sbjct: 280 LQFSHNGKYLASSSKDQTAIIWEISA-DGHISLKHTLVGHHKPVIAILWSPDDRQVLTCG 338
Query: 421 GDMTCELWDI 450
+ WD+
Sbjct: 339 AEEVIRRWDV 348
Score = 31.1 bits (67), Expect = 0.71
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +1
Query: 265 SYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDN--QILTSSGDMTCE 438
+++A G D+ I+ T G + V ELPGH+G + C + N + ++S D T
Sbjct: 502 AFIASGSEDSQVYIWHRST--GKLIV--ELPGHAGAVNCVSWSPTNLHMLASASDDGTIR 557
Query: 439 LWDIXTXQQCGQ 474
+W + Q Q
Sbjct: 558 IWGLDRINQQNQ 569
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 506 CAGAGPAQRFVF-GACDASAKLWERAGLQVQTDFPGHQSDINAVTXFP 646
C G G Q F+ G+ D+ +W R+ ++ + PGH +N V+ P
Sbjct: 495 CFG-GYKQAFIASGSEDSQVYIWHRSTGKLIVELPGHAGAVNCVSWSP 541
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTN 202
+ RGH + + + SD +++AS D + VWDS TT+
Sbjct: 341 KEFRGHTSYVNHAIFTSDGSRIITASSDCTVKVWDSKTTD 380
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/80 (21%), Positives = 32/80 (40%)
Frame = +2
Query: 65 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMT 244
+Q + + H + + + DS L S S DGK+ +W T + S V +
Sbjct: 251 LQYQADESFMMHDDPVLCIDFSRDSEMLASGSQDGKIKIWRIRTGVCIRRFDAHSQGVTS 310
Query: 245 CAYAPRAPTSLVVDWTTSAR 304
+++ L + +AR
Sbjct: 311 LSFSRDGSQLLSTSFDQTAR 330
>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
similar to BEIGE (GI:3928547) [Rattus norvegicus];
Similar to gb|U70015 lysosomal trafficking regulator from
Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
repeats. ESTs gb|T43386 and gb|AA395236 come from this
gene
Length = 3601
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +2
Query: 53 PIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIP 220
P G ++R + L H AK+ + + S S D +I+WD + + V +P
Sbjct: 3364 PRGSRRLRLEKALCAHTAKVTCLRVSQPYMMIASGSDDCTVIIWDLSSLSFVRQLP 3419
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/66 (22%), Positives = 30/66 (45%)
Frame = +1
Query: 289 DNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSGDMTCELWDIXTXQQC 468
++ C++ K + E GH+G + + + +L+SS D T LW + + +C
Sbjct: 338 ESTCAVLPSKVFSISETPQHEFRGHTGEILDLSWSEKGFLLSSSVDETVRLWRVGSSDEC 397
Query: 469 GQFTGH 486
+ H
Sbjct: 398 IRVFSH 403
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +2
Query: 134 DSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAPTSLVVDWTTSARF 307
D +S S DGK+ +WD V +R C Y P ++V T RF
Sbjct: 416 DDNYFISGSIDGKVRIWDVSQFRVVDYTDIRQIVTALC-YRPDGKGAVVGSMTGECRF 472
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 361 HSGYLXCCRF--LDDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCWR 516
H ++ C F +DDN ++ S D +WD+ + +T V +LC+R
Sbjct: 403 HKSFVTCVAFNPVDDNYFISGSIDGKVRIWDVSQFRVV-DYTDIRQIVTALCYR 455
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 31.1 bits (67), Expect = 0.71
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 98 HLAKIYAMHWGSDSR-NLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMT 244
H + I A W S +L+SAS DGK+++WD T + I + V++
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDLRTAWPLSVIDTHNDKVLS 406
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRF--LDDNQILTSSGDM 429
P+G +ACG +D ++ + ++ +L GH+ + F +D + + S D
Sbjct: 168 PNGKRLACGSMDGTICVFDV----DRSKLLHQLEGHNMPVRSLVFSPVDPRVLFSGSDDG 223
Query: 430 TCELWDIXTXQQCGQFTGHTGDVMSL 507
+ D G +GHT V+S+
Sbjct: 224 HVNMHDAEGKTLLGSMSGHTSWVLSV 249
>At3g26640.1 68416.m03329 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to ATAN11 (GI:2290528) [Arabidopsis thaliana]
(Genes Dev. 11 (11), 1422-1434 (1997)); contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies)
Length = 346
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 394 DDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCW 513
+ +I TSS D TC +WDI Q H +V + W
Sbjct: 147 EPRRIGTSSIDTTCTIWDIEREVVDTQLIAHDKEVYDIAW 186
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 31.1 bits (67), Expect = 0.71
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 280 GGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQ-ILTSSGDMTCELWDIXT 456
GG D +++ KT R L GH Y+ +F +N I+++S D T +W+ +
Sbjct: 69 GGDDYKIKVWNYKTH----RCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQS 124
Query: 457 XQQCGQFTGHTGDVM 501
TGH VM
Sbjct: 125 RTCISVLTGHNHYVM 139
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPR 262
TL GHL I + + ++ +VSAS D + +W+ + + + + +VM ++ P+
Sbjct: 88 TLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDS 190
TLRGH+ + ++ + + +VS S D + VWD+
Sbjct: 243 TLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDA 277
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 92 RGHLAKIYAMHWGSDSRNLVSASXDGKLIVWD 187
+ H I ++ + SD R L+S S DG L VWD
Sbjct: 370 KAHTDDITSVKFSSDGRILLSRSFDGSLKVWD 401
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 31.1 bits (67), Expect = 0.71
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +2
Query: 134 DSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAPTSLVVDWTTSARF 307
D +S S DGK+ +WD V +R C Y P A +++ T + RF
Sbjct: 374 DDNYFISGSIDGKVRIWDVTRCRVVDYTDIRDIVTAVC-YRPDAKGAVIGSMTGNCRF 430
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 361 HSGYLXCCRF--LDDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCWR 516
H+ ++ C F +DDN ++ S D +WD+ T + +T V ++C+R
Sbjct: 361 HNNFVTCVAFNPVDDNYFISGSIDGKVRIWDV-TRCRVVDYTDIRDIVTAVCYR 413
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 31.1 bits (67), Expect = 0.71
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +2
Query: 134 DSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAPTSLVVDWTTSARF 307
D +S S DGK+ +WD V +R C Y P A +++ T + RF
Sbjct: 374 DDNYFISGSIDGKVRIWDVTRCRVVDYTDIRDIVTAVC-YRPDAKGAVIGSMTGNCRF 430
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 361 HSGYLXCCRF--LDDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCWR 516
H+ ++ C F +DDN ++ S D +WD+ T + +T V ++C+R
Sbjct: 361 HNNFVTCVAFNPVDDNYFISGSIDGKVRIWDV-TRCRVVDYTDIRDIVTAVCYR 413
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSGDMTCE 438
+G +A G D+ +Y R + + + GH + RF+D + +++SS D T +
Sbjct: 630 TGRSLAFGSADH--KVYYYDLRNPKLPLCTMI-GHHKTVSYVRFVDSSTLVSSSTDNTLK 686
Query: 439 LWDI 450
LWD+
Sbjct: 687 LWDL 690
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTSSGDMTCE 438
+G +A G D+ +Y R + + + GH + RF+D + +++SS D T +
Sbjct: 630 TGRSLAFGSADH--KVYYYDLRNPKLPLCTMI-GHHKTVSYVRFVDSSTLVSSSTDNTLK 686
Query: 439 LWDI 450
LWD+
Sbjct: 687 LWDL 690
>At1g27470.1 68414.m03349 transducin-related / WD-40 repeat
protein-related contains 6 WD-40 repeats (PF00400) (2
weak); related to KIAA1988 protein (GI:18916910) [Homo
sapiens]
Length = 810
Score = 30.7 bits (66), Expect = 0.94
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAI 217
R+L + ++ W +D++ + S S DG + WD++ ++V+ I
Sbjct: 192 RSLPRVTGRALSVTWSADAQRIFSGSSDGLIRCWDANLCHEVYRI 236
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 30.7 bits (66), Expect = 0.94
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQ-ILTSSGDMTC 435
S +A GG+D ++ + + + L GHS + +F+ D +LT+S D T
Sbjct: 233 SKDVIATGGIDTTAVLFDRPSGQ----ILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTV 288
Query: 436 ELW 444
+W
Sbjct: 289 RIW 291
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQIL-TSSGDMTC 435
+ Y LD+ Y L + +V+ Y F D IL T +
Sbjct: 320 TNKYFVSASLDSTWCFYDLSSGLCLAQVTDASENDVNYTAAA-FHPDGLILGTGTAQSIV 378
Query: 436 ELWDIXTXQQCGQFTGHTGDVMSL 507
++WD+ + +F GH G++ S+
Sbjct: 379 KIWDVKSQANVAKFGGHNGEITSI 402
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILTS-SGDMTC 435
SG YV G D + ++S+ T GH G + +N + S S D
Sbjct: 256 SGRYVITGSDDRLVKVWSMDT----AYCLASCRGHEGDITDLAVSSNNIFIASASNDCVI 311
Query: 436 ELWDIXTXQQCGQFTGHTGDVMSLCW 513
+W + GHTG V ++ +
Sbjct: 312 RVWRLPDGLPVSVLRGHTGAVTAIAF 337
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +1
Query: 235 GDDLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFL----DDN 402
GD L S + + N C I + +G + VS L GH+G + F
Sbjct: 288 GDITDLAVSSNNIFIASASNDCVIRVWRLPDG-LPVS-VLRGHTGAVTAIAFSPRPGSPY 345
Query: 403 QILTSSGDMTCELWD 447
Q+L+SS D TC +WD
Sbjct: 346 QLLSSSDDGTCRIWD 360
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 346 RELPGHSGYLXCCRFLDDN--QILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSL 507
+ L GH + C LD + ++T S D ++W + T GH GD+ L
Sbjct: 239 KRLRGHRNAVYCA-ILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDL 293
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGS-DSRNLVSASXDGKLIVWD 187
+L GH A Y M + R +SA DGK IVWD
Sbjct: 581 SLTGHTASTYVMDVHPFNPRIAMSAGYDGKTIVWD 615
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +2
Query: 53 PIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIP--LR 226
P G + R T RG + + W D+R +++A D ++ VW++ + VH++
Sbjct: 532 PRGGPRQRILPTPRG----VNMIAWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTA 587
Query: 227 SSWVMTC-AYAPRAPTSLVVDWTT 295
S++VM + PR S D T
Sbjct: 588 STYVMDVHPFNPRIAMSAGYDGKT 611
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRN--LVSASXDGKLIVWDSHTTN---KVHAIPLRSSWVMTCA 250
TL GH ++ + W L S S DG++I+W N + H S V + A
Sbjct: 51 TLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSVNSIA 110
Query: 251 YAP 259
+AP
Sbjct: 111 WAP 113
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPR 262
TL GHL I + + + +VSAS D + +W+ + V + + +VM ++ P+
Sbjct: 88 TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCVSVLTGHNHYVMCASFHPK 146
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDS 190
TLRGH+ + ++ + + +VS S D + VWD+
Sbjct: 243 TLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDA 277
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 539 FGACDASAKLWERAGLQVQTDFPGHQSDINAVTXFPVPGFAF 664
FGA +A A + Q+ T PGH++ +N P FAF
Sbjct: 35 FGAQNAVAVFCPKTA-QILTTLPGHKASVNCTHWLPTSKFAF 75
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 241 DLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRF 390
+L P +A GGLDN +YS R G EL GH+ ++ F
Sbjct: 183 ELPQNPGRFALALGGLDNKIKLYS-GERTGKFTSVCELKGHTDWIRSLDF 231
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +2
Query: 98 HLAKIYAMHWGSDSRN-LVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAPTS 274
H + + W + RN L SAS D K+ VWD T + + V A+ AP
Sbjct: 264 HTESVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYAPEV 323
Query: 275 LV 280
L+
Sbjct: 324 LL 325
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +2
Query: 98 HLAKIYAMHWGSDSRN-LVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAPTS 274
H + + W + RN L SAS D K+ VWD T + + V A+ AP
Sbjct: 232 HTRSVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYAPEV 291
Query: 275 LV 280
L+
Sbjct: 292 LL 293
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 521 PAQRFVFGACDASAKLWERAGLQVQTDFPGHQSDINAVTXFPVPGFAFAT 670
P+ V G+ DAS KLW + +QT GH + + P GF A+
Sbjct: 161 PSGELVSGSSDASLKLW-KGKTSLQT-LSGHTDTVRGLAVMPDLGFLSAS 208
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 521 PAQRFVFGACDASAKLWERAGLQVQTDFPGHQSDINAVTXFPVPGFAFAT 670
P+ V G+ DAS KLW + +QT GH + + P GF A+
Sbjct: 161 PSGELVSGSSDASLKLW-KGKTSLQT-LSGHTDTVRGLAVMPDLGFLSAS 208
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVH--AIPLRSSWVMTC 247
LRGH + + S R +S S D + +WD +H A+ S W + C
Sbjct: 251 LRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALAC 305
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 92 RGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNK 205
+GH +YA+ LVS + L VWD T +K
Sbjct: 210 KGHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSK 247
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQI-LTSS 420
L + +G+ + GG + + ++ +T +++ L GH+ + + L+ S
Sbjct: 219 LAMNDTGTMLVSGGTEKVLRVWDPRTGSKSMK----LRGHTDNVRVLLLDSTGRFCLSGS 274
Query: 421 GDMTCELWDIXTXQQCGQFTGHTGDVMSL 507
D LWD+ + + HT V +L
Sbjct: 275 SDSMIRLWDLGQQRCLHTYAVHTDSVWAL 303
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVH--AIPLRSSWVMTC 247
LRGH + + S R +S S D + +WD +H A+ S W + C
Sbjct: 251 LRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALAC 305
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 92 RGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNK 205
+GH +YA+ LVS + L VWD T +K
Sbjct: 210 KGHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSK 247
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQI-LTSS 420
L + +G+ + GG + + ++ +T +++ L GH+ + + L+ S
Sbjct: 219 LAMNDTGTMLVSGGTEKVLRVWDPRTGSKSMK----LRGHTDNVRVLLLDSTGRFCLSGS 274
Query: 421 GDMTCELWDIXTXQQCGQFTGHTGDVMSL 507
D LWD+ + + HT V +L
Sbjct: 275 SDSMIRLWDLGQQRCLHTYAVHTDSVWAL 303
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 361 HSGYLXCCRF--LDDNQILTSSGDMTCELWDIXTXQ 462
HS Y+ C +F +DDN ++ S D +W I Q
Sbjct: 507 HSDYVTCIQFNPVDDNYFISGSLDAKVRIWSIPDHQ 542
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGN-VRVSRELPGHSGYLXCCRFL-DDNQILTSSGDMT 432
SG Y+A D C+ K + N V + L H + + DD ++LT
Sbjct: 235 SGKYLATASSD--CTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSPDDTKLLTCGNAEV 292
Query: 433 CELWDIXTXQQCGQF-TGHTGDVMSLC 510
+LWD+ T F +TG +S C
Sbjct: 293 LKLWDVDTGVLRHTFGNNNTGFTVSSC 319
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +2
Query: 62 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWD 187
RI+ T GH ++ + W + L S D + +WD
Sbjct: 205 RIRSSIVETYLGHTEEVCGLKWSESGKKLASGGNDNVVHIWD 246
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Frame = +1
Query: 244 LRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSR------------ELPGHSGYLXCCR 387
L + G Y+A GG+D ++ ++TRE +V+V++ GH G +
Sbjct: 212 LAVSSDGRYLATGGVDCHVHLWDIRTRE-HVQVNKLKNNQVKDSVHCAFTGHCGIVSSLC 270
Query: 388 FLDDN-QILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSL 507
F + ++ + S D T +W+ GH +++S+
Sbjct: 271 FREGTAELFSGSYDGTLSIWNAEHRTYIESCFGHQSELLSI 311
>At4g04920.1 68417.m00715 expressed protein
Length = 1250
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 119 MHWGSDS--RNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAPTSLVVDWT 292
+ W S R L+ A+ G++ +W T + + +SW C + R ++V W
Sbjct: 175 IEWSPTSCPRALLIANFHGRITIWTQPTQGSANLVHDATSW--QCEHEWRQDIAVVTKWL 232
Query: 293 TSA 301
T A
Sbjct: 233 TGA 235
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 340 RARCPRASSGYKSSRCCPVHHKRRRSPRGVGAGHHPGRAQRDRVH 206
R + P SGY S + H R SP+ GH+PG +Q R H
Sbjct: 456 RPKSPITPSGYNRSPSTHIGHNYR-SPKFNSGGHYPG-SQSSRHH 498
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRF-LDDNQILTSSGDMTCE 438
G+Y+A G D I+ T+ ++ + + G L CC + +D +LT D +
Sbjct: 315 GAYLATVGRDGYLRIFDFSTQ----KLVCGVKSYYGALLCCAWSMDGKYLLTGGEDDLVQ 370
Query: 439 LWDIXTXQQCGQFTGHTGDVMSLCW 513
+W + + GH V + +
Sbjct: 371 VWSMEDRKVVAWGEGHNSWVSGVAF 395
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 259 SGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDD-NQILTSSGDMTC 435
SGS G + C+ Y G ++++ GHS YL +QILT S D T
Sbjct: 171 SGSVFTAAG--DSCA-YCWDVESGKIKMT--FKGHSDYLHTVVSRSSASQILTGSEDGTA 225
Query: 436 ELWDIXT 456
+WD T
Sbjct: 226 RIWDCKT 232
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 349 ELPGHSGYLXCCRFLDDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSL 507
E GHSG + + +N++L++S D + LW I G F+ H V S+
Sbjct: 351 EFLGHSGDILDISWSKNNRLLSASVDNSVRLWQIGCEDCLGIFS-HNNYVTSV 402
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/58 (25%), Positives = 23/58 (39%)
Frame = +2
Query: 134 DSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAPTSLVVDWTTSARF 307
D + +S S DGK+ +W + V R C Y P ++ T+ RF
Sbjct: 408 DDDHFISGSIDGKVRIWSASQCQVVDWADARGIVTAVC-YQPDGQAVIIGTLTSDCRF 464
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 349 ELPGHSGYLXCCRFLDDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSL 507
E GHSG + + +N++L++S D + LW I G F+ H V S+
Sbjct: 351 EFLGHSGDILDISWSKNNRLLSASVDNSVRLWQIGCEDCLGIFS-HNNYVTSV 402
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/58 (25%), Positives = 23/58 (39%)
Frame = +2
Query: 134 DSRNLVSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPRAPTSLVVDWTTSARF 307
D + +S S DGK+ +W + V R C Y P ++ T+ RF
Sbjct: 408 DDDHFISGSIDGKVRIWSASQCQVVDWADARGIVTAVC-YQPDGQAVIIGTLTSDCRF 464
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 406 ILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSL 507
I ++S D LWDI + + QF GH G V L
Sbjct: 72 IFSASMDGDIRLWDISSRRTVCQFPGHQGAVRGL 105
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/47 (23%), Positives = 19/47 (40%)
Frame = +2
Query: 497 SCRCAGAGPAQRFVFGACDASAKLWERAGLQVQTDFPGHQSDINAVT 637
SC + + D +LW+ + + FPGHQ + +T
Sbjct: 60 SCMAKNPNYLKGIFSASMDGDIRLWDISSRRTVCQFPGHQGAVRGLT 106
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 388 FLDDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSL-CW 513
++ N++ + + D + ++W + Q T HT VMSL CW
Sbjct: 274 YVGANRLYSGAMDNSIKVWSLDNLQCIQTLTEHTSVVMSLICW 316
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRN--LVSASXDGKLIVWDSHTTN---KVHAIPLRSSWVMTCA 250
TL GH ++ + W L S S DG++I+W N + H V + A
Sbjct: 51 TLTGHRGPVWQVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIA 110
Query: 251 YAP 259
+AP
Sbjct: 111 WAP 113
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDN-QILTSSGDMTCE 438
G +A G D I++++T ++V H+ + RF ++ Q+ TSS D T +
Sbjct: 520 GKLLASAGHDKKVFIWNMET----LQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIK 575
Query: 439 LWDIXTXQQ-CGQFTGHTGDVMSL 507
+WD +GH VMS+
Sbjct: 576 IWDASDPGYFLRTISGHAAPVMSI 599
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 403 QILTSSGDMTCELWDIXTX-QQCGQFTGHTGDVMSLCW 513
Q L ++ + T ++DI ++ F GH+ +V S+CW
Sbjct: 646 QFLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCW 683
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDN-QILTSSGDMTCE 438
G +A G D I++++T ++V H+ + RF ++ Q+ TSS D T +
Sbjct: 522 GKLLASAGHDKKVFIWNMET----LQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIK 577
Query: 439 LWDIXTXQQ-CGQFTGHTGDVMSL 507
+WD +GH VMS+
Sbjct: 578 IWDASDPGYFLRTISGHAAPVMSI 601
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 403 QILTSSGDMTCELWDIXTX-QQCGQFTGHTGDVMSLCW 513
Q L ++ + T ++DI ++ F GH+ +V S+CW
Sbjct: 648 QFLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCW 685
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDN-QILTSSGDMTCE 438
G +A G D I++++T ++V H+ + RF ++ Q+ TSS D T +
Sbjct: 522 GKLLASAGHDKKVFIWNMET----LQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIK 577
Query: 439 LWDIXTXQQ-CGQFTGHTGDVMSL 507
+WD +GH VMS+
Sbjct: 578 IWDASDPGYFLRTISGHAAPVMSI 601
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 403 QILTSSGDMTCELWDIXTX-QQCGQFTGHTGDVMSLCW 513
Q L ++ + T ++DI ++ F GH+ +V S+CW
Sbjct: 648 QFLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCW 685
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDN-QILTSSGDMTCE 438
G +A G D I++++T ++V H+ + RF ++ Q+ TSS D T +
Sbjct: 522 GKLLASAGHDKKVFIWNMET----LQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIK 577
Query: 439 LWDIXTXQQ-CGQFTGHTGDVMSL 507
+WD +GH VMS+
Sbjct: 578 IWDASDPGYFLRTISGHAAPVMSI 601
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 403 QILTSSGDMTCELWDIXTX-QQCGQFTGHTGDVMSLCW 513
Q L ++ + T ++DI ++ F GH+ +V S+CW
Sbjct: 648 QFLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCW 685
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDN-QILTSSGDMTCE 438
G +A G D I++++T ++V H+ + RF ++ Q+ TSS D T +
Sbjct: 522 GKLLASAGHDKKVFIWNMET----LQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIK 577
Query: 439 LWDIXTXQQ-CGQFTGHTGDVMSL 507
+WD +GH VMS+
Sbjct: 578 IWDASDPGYFLRTISGHAAPVMSI 601
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 403 QILTSSGDMTCELWDIXTX-QQCGQFTGHTGDVMSLCW 513
Q L ++ + T ++DI ++ F GH+ +V S+CW
Sbjct: 648 QFLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCW 685
>At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 (1
significant) WD-40 repeats (PF0400); similar to Trp-Asp
repeat protein (PIR:T40094) [Schizosaccharomyces]
Length = 445
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVHAI 217
+T TL GHL +A W D + + D VWD +K A+
Sbjct: 308 KTLATLSGHLDFSFASAWHPDGFTFSTGNQDKTCRVWDIRNLSKSVAV 355
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWD 187
L GH I+ + W D +VS S D +W+
Sbjct: 231 LTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWE 263
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLX-CCRFLDDNQILTSSGDMTCE 438
GS + D I+ + ++E V L GHS + CC + D+ I+T+ D TC
Sbjct: 247 GSKIVSVSDDRSARIWEIDSQEV---VGPVLFGHSVRVWDCC--ISDSLIVTAGEDCTCR 301
Query: 439 LWDIXTXQ 462
+W + Q
Sbjct: 302 VWGVDGTQ 309
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWD 187
L GH I+ + W D +VS S D +W+
Sbjct: 231 LTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWE 263
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 262 GSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLX-CCRFLDDNQILTSSGDMTCE 438
GS + D I+ + ++E V L GHS + CC + D+ I+T+ D TC
Sbjct: 247 GSKIVSVSDDRSARIWEIDSQEV---VGPVLFGHSVRVWDCC--ISDSLIVTAGEDCTCR 301
Query: 439 LWDIXTXQ 462
+W + Q
Sbjct: 302 VWGVDGTQ 309
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTN 202
TL GH + + + DS +VSAS D L +W+ + TN
Sbjct: 889 TLAGHEKAVSYVKF-MDSETIVSASTDNSLKLWNLNKTN 926
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 352 LPGHSGYLXCCRFLDDNQILTSSGDMTCELWDIXTXQQCGQFTG 483
L GH + +F+D I+++S D + +LW++ G G
Sbjct: 890 LAGHEKAVSYVKFMDSETIVSASTDNSLKLWNLNKTNSSGLSPG 933
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +2
Query: 35 ATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSH 193
A ++++ + +T T GH A + + D+ LV+ S D +++W H
Sbjct: 2646 ADNSIKLVSSDGAKTLETAFGHCAPVTCLALSPDNNFLVTGSRDSTVLLWRIH 2698
>At2g25420.1 68415.m03045 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (3 repeats)
Length = 717
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKV 208
+ + L GH KI + + LVS+ DGKL +W + + K+
Sbjct: 502 KVKEKLEGHDQKITCLAFSRCFNVLVSSDSDGKLCLWSTKSWVKL 546
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 83 RTLRGHLAKIYAMHWGSDSRNL-VSASXDGKLIVWDSHTTNKVHAIPLRSSWVMTC 247
RT + H +Y W ++ SAS D L +WD IP +++C
Sbjct: 143 RTFKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWDVREPGSTMIIPAHDFEILSC 198
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVW 184
RT LRGH + + S+ + L ++ D ++IVW
Sbjct: 390 RTTLMLRGHYESVNTCCFNSNDQELYTSGADRQIIVW 426
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +2
Query: 62 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWD 187
RI+ T GH ++ + W + L S D + +WD
Sbjct: 223 RIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWD 264
>At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 580
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +1
Query: 235 GDDLRLRPSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQILT 414
GD + PS ++A G C ++ L+ G + R H GY+ + + +++
Sbjct: 417 GDGASVSPS--WIAAGFSSGQCRLFDLR-ENGFISSWR---AHDGYVTKLVAPESHLLVS 470
Query: 415 SSGDMTCELWDI 450
SS D T +WD+
Sbjct: 471 SSLDKTLRIWDL 482
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 89 LRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWD 187
L+GH + + + + +S +++AS DG + VW+
Sbjct: 285 LKGHKSAVTWLCFSPNSEQIITASKDGSIRVWN 317
>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1322
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 65 IQMRTRRTLRGHLAKIYAM-HWGSDSRNLVSASXDGKLIVW 184
I R RGH ++ M + D L S S DGK+ VW
Sbjct: 209 INTALRSLFRGHSQRVTDMAFFAEDVHLLASVSLDGKVFVW 249
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +2
Query: 536 VFGACDASAKLWERAGLQVQTDFPGHQSDINAVTXFPVPGFAFATG 673
V G D K W+ AG V +D GH+ + PV TG
Sbjct: 152 VSGGDDGVVKYWDVAGATVISDLLGHKDYVRCGDCSPVNDSMLVTG 197
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +2
Query: 86 TLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWDSHTTNKVH 211
T+ H I AM W L + S D L WD+ N VH
Sbjct: 109 TVAMHEGPIAAMAWIPGMNLLATGSWDKTLKYWDTRQQNPVH 150
>At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 391 LDDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCW 513
++ ++ T S D TC +WDI Q H +V + W
Sbjct: 143 VEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAW 183
>At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 391 LDDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCW 513
++ ++ T S D TC +WDI Q H +V + W
Sbjct: 143 VEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAW 183
>At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 391 LDDNQILTSSGDMTCELWDIXTXQQCGQFTGHTGDVMSLCW 513
++ ++ T S D TC +WDI Q H +V + W
Sbjct: 143 VEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAW 183
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 343 TRARCPRASS--GYKSSRCCPVHHKRRRSPRGVGAGHHPGRAQR 218
+++R R +S G +R CP + + SP GHH + QR
Sbjct: 195 SKSRLTRTASAIGAPCARICPYFTQTQASPPDAPNGHHQSQGQR 238
>At4g25250.1 68417.m03633 invertase/pectin methylesterase inhibitor
family protein similar to pectinesterase from
Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 199
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 99 ISRRSTPCTGAAIPGTWCRPVXMVS*SCGTATRPTRC 209
I+ + P T A PGT+ V +C + T PT C
Sbjct: 15 INSSNFPKTAATPPGTYQNHTTYVKTACNSTTYPTMC 51
>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1309
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 65 IQMRTRRTLRGHLAKIYAM-HWGSDSRNLVSASXDGKLIVW 184
I R RGH ++ M + D L S S DGK+ VW
Sbjct: 190 INTALRSLFRGHSQRVTDMAFFAEDVDMLASVSLDGKVFVW 230
>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1344
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 65 IQMRTRRTLRGHLAKIYAM-HWGSDSRNLVSASXDGKLIVW 184
I R RGH ++ M + D L S S DGK+ VW
Sbjct: 225 INTALRSLFRGHSQRVTDMAFFAEDVDMLASVSLDGKVFVW 265
>At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2
WD-40 repeats (PF0400);similar to guanine
nucleotide-binding protein beta subunit GPBA (SP:P36408)
[Dictyostelium discoideum (Slime mold)]; similar to
katanin p80 (WD40-containing) subunit B 1 (GI:12655011)
[Homo sapiens]
Length = 418
Score = 27.9 bits (59), Expect = 6.6
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 PSGSYVACGGLDNICSIYSLKTREGNVRVSRELPGHSGYLXCCRFLDDNQIL-TSSGDMT 432
P G +A G C I + G V S L GH Y + + IL T + D
Sbjct: 258 PDGKLLAVVGDSTECLISD--SHSGKVISS--LRGHKDYSFASAWHPNGLILATGNQDTA 313
Query: 433 CELWDIXTXQQC-GQFTGHTGDVMSL 507
C LWDI + G+ G + L
Sbjct: 314 CRLWDIRNPSESFAVLKGNMGAIRGL 339
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVW 184
RT LRGH + + S+ + L ++ D +++VW
Sbjct: 390 RTTLMLRGHYESVNTCCFNSNDQELYTSGSDRQILVW 426
>At5g14050.1 68418.m01644 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to unknown protein (ref|NP_057085.1)
Length = 546
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +2
Query: 110 IYAMHWGSDSRNLVSASXDGKLIVWDSHT 196
+ ++ + D ++L+S+ DG++ VWD T
Sbjct: 377 VRSLAFSEDGKHLLSSGGDGQVYVWDLRT 405
>At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies, 1
significant); similar to Trp-Asp repeat protein
(PIR:T40094) [Schizosaccharomyces]
Length = 447
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 74 RTRRTLRGHLAKIYAMHWGSDSRNLVSASXDGKLIVWD 187
+T TL GHL +A W D + + D VWD
Sbjct: 310 KTLETLSGHLDFSFASAWHPDGVTFSTGNQDKTCRVWD 347
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,584,174
Number of Sequences: 28952
Number of extensions: 258509
Number of successful extensions: 1465
Number of sequences better than 10.0: 158
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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