Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060510.seq
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    58   1e-09

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = +2

Query: 59  ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 232
           EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A+PR+
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104

Query: 233 XNIRF*LHPPPL 268
            N  F L PP L
Sbjct: 105 NNFTFWLLPPAL 116



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 28/72 (38%), Positives = 33/72 (45%)
 Frame = +1

Query: 295 ENGAGTGXTVYPPLSSNIAHRGRSVDLAIXSLHLXXXXXXXXXXXXXXXXXXXRXNXXSX 474
           E G G G TVYPPLSS  +H G ++DLAI SL L                   R    S 
Sbjct: 126 EEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSL 185

Query: 475 DQLPXFV*AVGI 510
            Q+P F  A+ I
Sbjct: 186 YQMPLFAWAIMI 197



 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 20/36 (55%), Positives = 25/36 (69%)
 Frame = +3

Query: 510 TAFL*XLSXPVLAGAXTI*LTDRNLNTSFFDPAGGG 617
           T+ L  L+ PVLAG   +  +DRNLNTSF+ P GGG
Sbjct: 198 TSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGG 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,282
Number of Sequences: 5004
Number of extensions: 23244
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)