Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060509.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    31   0.20 
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    29   0.47 
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   2.5  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    27   3.3  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    27   3.3  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   7.7  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   7.7  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   7.7  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   7.7  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    25   7.7  

>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = +1

Query: 229 KREQTALDKHTTTQLCKQKNSGVNIEEKHDQAIVNHEKNVGFDSSIGDHEPRPNTSYLYS 408
           + E+ + D  + T L  QK + +   E  D+  VN  +     SSI   E R N S    
Sbjct: 284 RTEKLSNDSPSNTSLSLQKQNSIVANE--DKRSVNGSERTETRSSIDQSEMRTNVSDSTK 341

Query: 409 RADLKAINS 435
             +LK INS
Sbjct: 342 SEELKKINS 350


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 342 LLMVYNSLIVFFFNVHSAIFLFTQLCGC-VFIKSGLFSFPKFSNLLFMACTLFFGCDIII 166
           ++ VY  L    +N     F+    CG  VFI S  + F K S+       L+FG  ++I
Sbjct: 540 IITVYFQLCSENYNWWWRSFITPGFCGIYVFIFSVFYWFFKISSSSLATAVLYFGYSLLI 599

Query: 165 STLL 154
           S L+
Sbjct: 600 SVLV 603


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 22/98 (22%), Positives = 43/98 (43%)
 Frame = +1

Query: 214 IRELRKREQTALDKHTTTQLCKQKNSGVNIEEKHDQAIVNHEKNVGFDSSIGDHEPRPNT 393
           I EL+     AL+    T + +Q+ + +N  E+      +HEKNVG    +G+ +  P  
Sbjct: 509 INELQDNRDAALE--IVTNIFEQRRN-INELEREQSQNEDHEKNVGSQLFVGNQKV-PQD 564

Query: 394 SYLYSRADLKAINSDNKTCLSRQTSDPGKKLHRSHAFR 507
            +   RA +     + +     +T +  ++ H+    R
Sbjct: 565 KW-EKRARISRSKEEARQFTIWKTEETQRRFHKLDILR 601


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 507 IDRNQIAPKRHGSCNGRSETANFTMISNQKLSKERLKILGNFLEXQMKK 653
           +D NQI     G+   + E     +   Q LSK  LK L N ++ Q+KK
Sbjct: 25  LDGNQIEEMSRGNAKSKDEIIAKLLTEGQALSKNELK-LNNTIK-QLKK 71


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 21/77 (27%), Positives = 37/77 (48%)
 Frame = +1

Query: 193 STSHKE*IRELRKREQTALDKHTTTQLCKQKNSGVNIEEKHDQAIVNHEKNVGFDSSIGD 372
           S SH+  + E RK+ Q  LDK+ +  +  ++   +N E+      V +++    D +   
Sbjct: 359 SASHQRSLSENRKKNQHKLDKYLSADVSAEEIIKLN-EDTSVLPDVPYQEIANEDRA--- 414

Query: 373 HEPRPNTSYLYSRADLK 423
            EP P T+ +   A LK
Sbjct: 415 PEPDPETNLIAGLAPLK 431


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 483 VAQESCF*IDRNQIAPKRHGSCNGRSETANFTMISNQKLSKERLKILGN 629
           VA+ES   + +N  A      C G   T    +++ QK  K+RLK +GN
Sbjct: 591 VARESISALRKNVTA-----KCYGGDVTRKQKLLNKQKEGKKRLKSVGN 634


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 236 SRFLSSRIYSLWLVLCFL 183
           SR LSS ++SL L+LC+L
Sbjct: 563 SRGLSSTVWSLQLLLCYL 580


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = +1

Query: 139 YLKCAQKCRNNDIAAKKQSTSH--KE*IRELRK--REQTALDKHTTTQLC 276
           ++K AQKCR + +A +   T     E IR L K   + T    HT  + C
Sbjct: 589 FIKIAQKCRRHFVAQQLGETEPFINEIIRNLAKTTEDLTPQQTHTFYEAC 638


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 493 SCATFFLGHWFDVINRFYCHC*WPS-DQLCYINSW 392
           SC  FF+ ++F + N  +C   + S +++ Y++ W
Sbjct: 118 SCGLFFVSYFFSLKNNPFCLMLFSSHEKMNYLHRW 152


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = +1

Query: 367 GDHEPRPNTSYLYSRADLKAINSDNKTCLSRQTSDPGKKLHRSH 498
           G + P  NTSY         +N  N+ C    +   G  + R H
Sbjct: 303 GFYPPPENTSYFVLNLSNTTLNVKNELCFPIPSGKKGAPVFRKH 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,056
Number of Sequences: 5004
Number of extensions: 54111
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)