Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060509.seq
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    32   0.37 
08_02_1588 - 28067972-28068058,28068149-28068479,28069632-28069864     29   2.6  
02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,522...    29   4.5  
01_05_0204 + 19246633-19246938,19247091-19247192,19247314-192474...    28   7.9  

>02_01_0246 +
           1617326-1617367,1618903-1624419,1625040-1625498,
           1625603-1625887,1626016-1626030,1626339-1626419,
           1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
 Frame = +1

Query: 166 NNDIAAKKQSTSHKE*IRELRKR--EQTALDKHTTTQLCKQKNSGVNIEEKHDQAIVNHE 339
           N+ ++ K + T H+  +    ++  E  A  +  T    +++N G ++EE  D   V+ E
Sbjct: 328 NDSLSVKAEETCHQSNVATCGEKTPEDDATTREPTVDTKEEQNQG-SVEEMKDAEAVDTE 386

Query: 340 K-----NVGFDSSIGDHEPRPNTS 396
           +     +V FD +I DH    N S
Sbjct: 387 ETVQQSSVAFDEAIQDHAATTNPS 410


>08_02_1588 - 28067972-28068058,28068149-28068479,28069632-28069864
          Length = 216

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 146 NALKSVEIMISQPKNRV--QAIKSKFENLGNENKPLLINTQPHS 271
           NA++S   +I+  + R+     +  FENL  + KPL +N+ PH+
Sbjct: 75  NAVRSETDIINVVEQRIWHSMEEGHFENLPGKGKPLNLNSNPHA 118


>02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,
            5222445-5222793,5223189-5223510,5223621-5224123,
            5224486-5224578,5224708-5224759,5224837-5225129,
            5225208-5225630,5225734-5226070,5226185-5226220,
            5226272-5226589,5227465-5228450
          Length = 1637

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 79   SLFVSVDLNKRVIIVER--FRKYLKCAQKCRNNDIAAKKQSTSHKE*IRELRKREQTA 246
            S+   + +   +++V     RKYLKCA + R+ND + +  +   K  +   +K E +A
Sbjct: 1518 SISEDMKIESHIMLVSEKILRKYLKCAGRERSNDSSGRDPALRWKLPLGTAKKEELSA 1575


>01_05_0204 +
           19246633-19246938,19247091-19247192,19247314-19247431,
           19247977-19247996,19248122-19248160,19248282-19248342,
           19248464-19248664,19248756-19249057,19249448-19249601,
           19249683-19249939,19250015-19250045,19251027-19251166,
           19252067-19252177,19253071-19253283
          Length = 684

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 528 PKRHGSCNGRSETANFTMISNQKLS-KERLKILGNFLEXQM 647
           P  H S NG+ ET  +T  S + L   ER+  + +FL   M
Sbjct: 373 PMDHSSMNGQEETDEYTFESAEGLDVNERIDKIADFLSFGM 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,628,610
Number of Sequences: 37544
Number of extensions: 289287
Number of successful extensions: 716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)